Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g25224 Brassica carinata HOM05D007259 ORTHO05D009158 3.0e-84 315.1 151 100.0
Sp5g34900 Schrenkiella parvula HOM05D007259 ORTHO05D009158 1.9e-78 295.8 165 87.9
BcaB05g25221 Brassica carinata HOM05D007259 ORTHO05D009158 2.7e-77 292.0 165 87.3
Thhalv10019243m.g Eutrema salsugineum HOM05D007259 ORTHO05D009158 6.0e-77 290.8 165 85.5
BcaC03g15926 Brassica carinata HOM05D007259 ORTHO05D009158 1.3e-76 289.7 165 86.7
BolC2t09700H Brassica oleracea HOM05D007259 ORTHO05D009158 1.3e-76 289.7 165 86.7
C02p36870 Brassica napus HOM05D007259 ORTHO05D009158 3.0e-76 288.5 165 86.1
A02p23100 Brassica napus HOM05D007259 ORTHO05D009158 1.1e-75 286.6 165 86.1
BraA02t07308Z Brassica rapa HOM05D007259 ORTHO05D009158 1.1e-75 286.6 165 86.1
AT1G80860 Arabidopsis thaliana HOM05D007259 ORTHO05D009158 3.3e-75 285.0 165 84.8
AL2G40530 Arabidopsis lyrata HOM05D007259 ORTHO05D009158 1.8e-73 279.3 165 84.8
Carub.0002s2668 Capsella rubella HOM05D007259 ORTHO05D009158 6.9e-73 277.3 165 82.4
CARHR073610 Cardamine hirsuta HOM05D007259 ORTHO05D009158 3.4e-72 275.0 165 83.0
Aa31LG4G1140 Aethionema arabicum HOM05D007259 ORTHO05D009158 8.4e-71 270.4 164 78.7
THA.LOC104812409 Tarenaya hassleriana HOM05D007259 ORTHO05D009158 1.5e-67 259.6 165 77.0
Cfa001880 Carpinus fangiana HOM05D007259 ORTHO05D009158 1.3e-66 256.5 165 73.3
TWI75G0585 Tripterygium wilfordii HOM05D007259 ORTHO05D009158 6.2e-66 254.2 165 73.3
VMungo0331G0163 Vigna mungo HOM05D007259 ORTHO05D009158 8.1e-66 253.8 163 73.6
Rhsim08G0205600 Rhododendron simsii HOM05D007259 ORTHO05D009158 1.8e-65 252.7 163 72.4
Dinv21412 Davidia involucrata HOM05D007259 ORTHO05D009158 3.1e-65 251.9 165 72.7
GSVIVG01015956001 Vitis vinifera HOM05D007259 ORTHO05D009158 3.1e-65 251.9 165 73.9
CANSAT56G1631 Cannabis sativa HOM05D007259 ORTHO05D009158 4.0e-65 251.5 165 73.3
Sc12g0008330 Simmondsia chinensis HOM05D007259 ORTHO05D009158 9.0e-65 250.4 162 72.2
Potri.001G044200 Populus trichocarpa HOM05D007259 ORTHO05D009158 1.2e-64 250.0 165 71.5
CSS0004525 Camellia sinensis var. sinensis HOM05D007259 ORTHO05D009158 1.5e-64 249.6 163 71.8
Eucgr.F03958 Eucalyptus grandis HOM05D007259 ORTHO05D009158 1.5e-64 249.6 165 72.7
PGR102G1952 Punica granatum HOM05D007259 ORTHO05D009158 1.5e-64 249.6 165 73.9
Actinidia36875 Actinidia chinensis HOM05D007259 ORTHO05D009158 3.4e-64 248.4 163 73.0
Sabra01G0030500 Salix brachista HOM05D007259 ORTHO05D009158 5.8e-64 247.7 165 70.9
PSO170G4635 Papaver somniferum HOM05D007259 ORTHO05D009158 7.6e-64 247.3 166 72.3
Duzib235G0063 Durio zibethinus HOM05D007259 ORTHO05D009158 1.7e-63 246.1 165 71.5
Gohir.D06G118700 Gossypium hirsutum HOM05D007259 ORTHO05D009158 1.7e-63 246.1 165 71.5
Medtr4g007095 Medicago truncatula HOM05D007259 ORTHO05D009158 1.7e-63 246.1 165 73.3
QL05p036089 Quercus lobata HOM05D007259 ORTHO05D009158 1.7e-63 246.1 166 73.5
Hund00433 Selenicereus undatus HOM05D007259 ORTHO05D009158 2.2e-63 245.7 165 72.7
Gohir.A06G114200 Gossypium hirsutum HOM05D007259 ORTHO05D009158 2.9e-63 245.4 165 71.5
Gorai.010G136500 Gossypium raimondii HOM05D007259 ORTHO05D009158 2.9e-63 245.4 165 71.5
Glyma.08G218900 Glycine max HOM05D007259 ORTHO05D009158 3.8e-63 245.0 166 70.5
PSO017G0751 Papaver somniferum HOM05D007259 ORTHO05D009158 3.8e-63 245.0 166 72.3
HanXRQChr05g0153761 Helianthus annuus HOM05D007259 ORTHO05D009158 4.9e-63 244.6 165 70.9
RcHm_v2.0_Chr2g0132951 Rosa chinensis HOM05D007259 ORTHO05D009158 4.9e-63 244.6 165 72.1
FvH4_6g28630 Fragaria vesca HOM05D007259 ORTHO05D009158 6.4e-63 244.2 165 71.5
FAN14G4954 Fragaria x ananassa HOM05D007259 ORTHO05D009158 6.4e-63 244.2 165 71.5
CAN.G1932.2 Capsicum annuum HOM05D007259 ORTHO05D009158 8.4e-63 243.8 165 70.3
TPR.G23079 Trifolium pratense HOM05D007259 ORTHO05D009158 1.4e-62 243.0 165 71.5
Atru.chr10.2413 Acer truncatum HOM05D007259 ORTHO05D009158 1.9e-62 242.7 165 69.1
Ah.01g006970 Amaranthus hybridus HOM05D007259 ORTHO05D009158 2.4e-62 242.3 161 70.2
Ciclev10026584m.g Citrus clementina HOM05D007259 ORTHO05D009158 4.2e-62 241.5 165 69.7
Thecc.06G041800 Theobroma cacao HOM05D007259 ORTHO05D009158 4.2e-62 241.5 165 69.7
Lj5A81T88 Lonicera japonica HOM05D007259 ORTHO05D009158 7.1e-62 240.7 165 69.1
EL10Ac9g22206 Beta vulgaris HOM05D007259 ORTHO05D009158 1.2e-61 240.0 166 69.3
ClCG10G012930 Citrullus lanatus HOM05D007259 ORTHO05D009158 1.2e-61 240.0 165 70.9
FAN05G5272 Fragaria x ananassa HOM05D007259 ORTHO05D009158 1.6e-61 239.6 165 69.7
Lsat_1_v5_gn_5_8261 Lactuca sativa HOM05D007259 ORTHO05D009158 1.6e-61 239.6 165 69.1
Phvul.010G161400 Phaseolus vulgaris HOM05D007259 ORTHO05D009158 1.6e-61 239.6 163 69.3
Medtr4g007090 Medicago truncatula HOM05D007259 ORTHO05D009158 2.7e-61 238.8 165 70.9
TPR.G23090 Trifolium pratense HOM05D007259 ORTHO05D009158 2.7e-61 238.8 165 71.5
Peaxi162Scf00207g00430 Petunia axillaris HOM05D007259 ORTHO05D009158 1.0e-60 236.9 165 67.3
Lalb_Chr01g0012071 Lupinus albus HOM05D007259 ORTHO05D009158 1.3e-60 236.5 163 69.3
CiPaw.01G254600 Carya illinoinensis HOM05D007259 ORTHO05D009158 1.8e-60 236.1 165 70.3
Lj3g0012869 Lotus japonicus HOM05D007259 ORTHO05D009158 1.8e-60 236.1 163 69.3
Manes.04G102300 Manihot esculenta HOM05D007259 ORTHO05D009158 3.0e-60 235.3 165 69.7
Cc04_g05120 Coffea canephora HOM05D007259 ORTHO05D009158 6.7e-60 234.2 165 67.3
Solyc06g068470.3 Solanum lycopersicum HOM05D007259 ORTHO05D009158 6.7e-60 234.2 165 66.7
Sopen06g025720 Solanum pennellii HOM05D007259 ORTHO05D009158 8.7e-60 233.8 165 67.3
SGA_v2.0_scaffold26G11300 Striga asiatica HOM05D007259 ORTHO05D009158 1.1e-59 233.4 163 68.7
CsaV3_3G032790 Cucumis sativus L. HOM05D007259 ORTHO05D009158 1.9e-59 232.6 165 69.1
Prupe.3G098300 Prunus persica HOM05D007259 ORTHO05D009158 2.5e-59 232.3 165 69.1
Nn8g39898 Nelumbo nucifera HOM05D007259 ORTHO05D009158 3.3e-59 231.9 165 67.9
Os02g0612100 Oryza sativa ssp. japonica HOM05D007259 ORTHO05D009158 5.6e-59 231.1 164 69.5
MSTRG.4677 Avicennia marina HOM05D007259 ORTHO05D009158 9.6e-59 230.3 164 67.7
FAN09G1653 Fragaria x ananassa HOM05D007259 ORTHO05D009158 1.6e-58 229.6 164 68.9
PGSC0003DMG400028490 Solanum tuberosum HOM05D007259 ORTHO05D009158 2.8e-58 228.8 165 65.5
Oeu060130.1 Olea europaea HOM05D007259 ORTHO05D009158 3.6e-58 228.4 165 66.7
SalBow6G4962 Salvia bowleyana HOM05D007259 ORTHO05D009158 6.2e-58 227.6 164 66.5
Psat7g260280 Pisum sativum HOM05D007259 ORTHO05D009158 8.1e-58 227.3 157 72.0
Sed0006537 Sechium edule HOM05D007259 ORTHO05D009158 1.1e-57 226.9 165 67.9
MBI15_g08512_MAGBIO Magnolia biondii HOM05D007259 ORTHO05D009158 1.5e-56 223.0 161 64.0
Zm00001eb184520 Zea mays HOM05D007259 ORTHO05D009158 4.5e-56 221.5 161 68.9
Migut.D01126 Erythranthe guttata HOM05D007259 ORTHO05D009158 1.7e-55 219.5 163 65.0
ECA246G0776 Erigeron canadensis HOM05D007259 ORTHO05D009158 3.8e-55 218.4 126 77.8
Potri.003G182400 Populus trichocarpa HOM05D007259 ORTHO05D009158 9.3e-54 213.8 117 82.9
Nitab4.5_0008962g0030 Nicotiana tabacum HOM05D007259 ORTHO05D009158 4.6e-53 211.5 144 69.4
Haze_16667 Corylus avellana HOM05D007259 ORTHO05D009158 4.3e-51 204.9 262 45.4
unitig_60.g25615 Utricularia gibba HOM05D007259 ORTHO05D009158 2.8e-50 202.2 202 53.5
DCAR_021369 Daucus carota HOM05D007259 ORTHO05D009158 6.2e-50 201.1 109 84.4
SMO141G0127 Selaginella moellendorffii HOM05D007259 ORTHO05D009158 2.1e-45 186.0 158 58.2
CDE12G0386 Ceratophyllum demersum HOM05D007259 ORTHO05D009158 6.7e-44 181.0 140 63.6
AagrBONN_evm.TU.Sc2ySwM_117.1157 Anthoceros agrestis HOM05D007259 ORTHO05D009158 4.3e-43 178.3 157 55.4
HPP92_010735 Vanilla planifolia HOM05D007259 ORTHO05D009158 6.3e-42 174.5 167 55.1
Pp3c6_3720 Physcomitrium patens HOM05D007259 ORTHO05D009158 1.4e-41 173.3 163 54.6
SEGI_39537 Sequoiadendron giganteum HOM05D007259 ORTHO05D009158 1.8e-41 172.9 159 52.8
Glyma.07G022900 Glycine max HOM05D007259 ORTHO05D009158 2.3e-36 156.0 84 84.5
vmacro19057 Vaccinium macrocarpon HOM05D007259 ORTHO05D009158 2.8e-34 149.1 82 79.3
MD17G1223400 Malus domestica HOM05D007259 ORTHO05D009158 1.8e-33 146.4 83 79.5
ATR0739G058 Amborella trichopoda HOM05D007259 ORTHO05D009158 1.7e-31 139.8 87 73.6
HPP92_010738 Vanilla planifolia HOM05D007259 ORTHO05D009158 2.8e-26 122.5 94 61.7
Aqoxy2G00331 Aquilegia oxysepala HOM05D001307 ORTHO05D001158 7.7e-24 114.4 91 61.5
MD17G1223600 Malus domestica HOM05D007259 ORTHO05D009158 2.3e-20 102.8 83 63.9
FAN02G2583 Fragaria x ananassa HOM05D007259 ORTHO05D009158 6.7e-20 101.3 82 63.4
Cpa.g.sc10.78 Carica papaya HOM05D007259 ORTHO05D009158 8.8e-20 100.9 82 61.0
Nitab4.5_0000886g0050 Nicotiana tabacum HOM05D007259 ORTHO05D009158 2.6e-19 99.4 91 54.9
MELO3C026739.2 Cucumis melo HOM05D007259 ORTHO05D009158 4.8e-18 95.1 82 59.8
Lj5C80T7 Lonicera japonica HOM05D007259 ORTHO05D009158 4.1e-17 92.0 82 59.8
SalBow8G2481 Salvia bowleyana HOM05D007259 ORTHO05D009158 1.2e-16 90.5 68 64.7
COL.COLO4_26703 Corchorus olitorius HOM05D007259 ORTHO05D009158 5.2e-12 75.1 43 79.1


User provided reference genes

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