Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g25222 Brassica carinata HOM05D000304 ORTHO05D000185 3.7e-55 218.0 114 100.0
BcaB05g25225 Brassica carinata HOM05D000304 ORTHO05D000185 2.3e-28 129.0 74 90.5
BcaC03g15927 Brassica carinata HOM05D000304 ORTHO05D000185 3.0e-28 128.6 73 90.4
A02p23110 Brassica napus HOM05D000304 ORTHO05D000185 3.0e-28 128.6 73 90.4
C02p36880 Brassica napus HOM05D000304 ORTHO05D000185 3.0e-28 128.6 73 90.4
BolC2t09701H Brassica oleracea HOM05D000304 ORTHO05D000185 3.0e-28 128.6 73 90.4
BraA02t07309Z Brassica rapa HOM05D000304 ORTHO05D000185 3.0e-28 128.6 73 90.4
BcaB02g08717 Brassica carinata HOM05D000304 ORTHO05D000185 6.2e-26 120.9 74 85.1
Thhalv10018925m.g Eutrema salsugineum HOM05D000304 ORTHO05D000185 8.1e-26 120.6 75 88.0
AL2G40550 Arabidopsis lyrata HOM05D000304 ORTHO05D000185 8.9e-25 117.1 75 84.0
Sp5g34920 Schrenkiella parvula HOM05D000304 ORTHO05D000185 8.9e-25 117.1 75 85.3
CARHR073630 Cardamine hirsuta HOM05D000304 ORTHO05D000185 2.0e-24 115.9 75 84.0
AT1G80840 Arabidopsis thaliana HOM05D000304 ORTHO05D000185 2.4e-22 109.0 74 78.4
BcaC08g47540 Brassica carinata HOM05D000304 ORTHO05D000185 2.4e-22 109.0 74 82.4
C06p53650 Brassica napus HOM05D000304 ORTHO05D000185 2.4e-22 109.0 74 82.4
BolC6t40382H Brassica oleracea HOM05D000304 ORTHO05D000185 2.4e-22 109.0 74 82.4
Carub.0002s2670 Capsella rubella HOM05D000304 ORTHO05D000185 9.3e-22 107.1 74 81.1
A07p44840 Brassica napus HOM05D000304 ORTHO05D000185 2.7e-21 105.5 74 79.7
BraA07t31991Z Brassica rapa HOM05D000304 ORTHO05D000185 2.7e-21 105.5 74 79.7
BcaC08g45343 Brassica carinata HOM05D000304 ORTHO05D000185 1.0e-20 103.6 73 79.5
C06p29570 Brassica napus HOM05D000304 ORTHO05D000185 1.0e-20 103.6 73 79.5
BolC6t38122H Brassica oleracea HOM05D000304 ORTHO05D000185 1.0e-20 103.6 73 79.5
A07p26890 Brassica napus HOM05D000304 ORTHO05D000185 3.0e-20 102.1 74 78.4
BraA07t30334Z Brassica rapa HOM05D000304 ORTHO05D000185 3.0e-20 102.1 74 78.4
BcaB02g07244 Brassica carinata HOM05D000304 ORTHO05D000185 6.6e-20 100.9 73 76.7
Aa31LG4G1110 Aethionema arabicum HOM05D000304 ORTHO05D000185 2.4e-17 92.4 85 63.5
THA.LOC104813309 Tarenaya hassleriana HOM05D000304 ORTHO05D000185 2.2e-15 85.9 92 54.3
THA.LOC104813588 Tarenaya hassleriana HOM05D000304 ORTHO05D000185 4.2e-14 81.6 92 53.3
THA.LOC104808177 Tarenaya hassleriana HOM05D000304 ORTHO05D000185 1.6e-13 79.7 80 61.2
Manes.11G066500 Manihot esculenta HOM05D000304 ORTHO05D000185 3.5e-13 78.6 67 59.7
Potri.003G182200 Populus trichocarpa HOM05D000304 ORTHO05D000185 7.9e-13 77.4 66 59.1
Duzib235G0964 Durio zibethinus HOM05D000304 ORTHO05D000185 2.3e-12 75.9 64 59.4
QL05p036148 Quercus lobata HOM05D000304 ORTHO05D000185 2.3e-12 75.9 73 54.8
Sabra03G0133100 Salix brachista HOM05D000304 ORTHO05D000185 3.0e-12 75.5 66 57.6
Atru.chr10.2411 Acer truncatum HOM05D000304 ORTHO05D000185 2.5e-11 72.4 78 51.3
Hma1.2p1_0109F.1_g052520 Hydrangea macrophylla HOM05D000304 ORTHO05D000185 2.5e-11 72.4 74 56.8
Potri.001G044500 Populus trichocarpa HOM05D000304 ORTHO05D000185 7.4e-11 70.9 61 60.7
Sabra01G0030700 Salix brachista HOM05D000304 ORTHO05D000185 7.4e-11 70.9 75 52.0
CiPaw.01G254500 Carya illinoinensis HOM05D000304 ORTHO05D000185 9.6e-11 70.5 73 52.1
FAN02G3369 Fragaria x ananassa HOM05D000304 ORTHO05D000185 9.6e-11 70.5 65 56.9
Haze_16666 Corylus avellana HOM05D000304 ORTHO05D000185 1.3e-10 70.1 67 56.7
FvH4_6g28650 Fragaria vesca HOM05D000304 ORTHO05D000185 1.3e-10 70.1 63 57.1
FAN05G1614 Fragaria x ananassa HOM05D000304 ORTHO05D000185 1.3e-10 70.1 63 57.1
FAN09G3457 Fragaria x ananassa HOM05D000304 ORTHO05D000185 1.3e-10 70.1 63 57.1
FAN14G0998 Fragaria x ananassa HOM05D000304 ORTHO05D000185 1.3e-10 70.1 63 57.1
CANSAT56G0331 Cannabis sativa HOM05D000304 ORTHO05D000185 1.6e-10 69.7 76 48.7
RcHm_v2.0_Chr2g0133001 Rosa chinensis HOM05D000304 ORTHO05D000185 2.8e-10 68.9 69 55.1
SalBow6G4247 Salvia bowleyana HOM05D000304 ORTHO05D000185 2.8e-10 68.9 67 55.2
Thecc.06G041300 Theobroma cacao HOM05D000304 ORTHO05D000185 2.8e-10 68.9 60 58.3
Cc04_g05080 Coffea canephora HOM05D000304 ORTHO05D000185 4.8e-10 68.2 73 46.6
CiPaw.02G162100 Carya illinoinensis HOM05D000304 ORTHO05D000185 8.1e-10 67.4 79 49.4
Lsat_1_v5_gn_4_86881 Lactuca sativa HOM05D000304 ORTHO05D000185 8.1e-10 67.4 75 49.3
MD09G1224500 Malus domestica HOM05D000304 ORTHO05D000185 8.1e-10 67.4 63 55.6
Cfa001881 Carpinus fangiana HOM05D000304 ORTHO05D000185 1.1e-09 67.0 74 45.9
Duzib192G0895 Durio zibethinus HOM05D000304 ORTHO05D000185 1.1e-09 67.0 60 56.7
DCAR_025562 Daucus carota HOM05D000304 ORTHO05D000185 1.4e-09 66.6 79 45.6
Sed0010958 Sechium edule HOM05D000304 ORTHO05D000185 1.4e-09 66.6 73 50.7
HanXRQChr09g0274431 Helianthus annuus HOM05D000304 ORTHO05D000185 1.8e-09 66.2 59 57.6
TPR.G23085 Trifolium pratense HOM05D000304 ORTHO05D000185 2.4e-09 65.9 67 56.7
VMungo0331G1908 Vigna mungo HOM05D000304 ORTHO05D000185 2.4e-09 65.9 61 54.1
Prupe.3G098100 Prunus persica HOM05D000304 ORTHO05D000185 3.1e-09 65.5 71 49.3
AUR62026996 Chenopodium quinoa HOM05D000304 ORTHO05D000185 4.0e-09 65.1 62 54.8
AUR62030836 Chenopodium quinoa HOM05D000304 ORTHO05D000185 5.3e-09 64.7 64 54.7
ClCG10G012940 Citrullus lanatus HOM05D000304 ORTHO05D000185 5.3e-09 64.7 64 53.1
Dinv23286 Davidia involucrata HOM05D000304 ORTHO05D000185 5.3e-09 64.7 73 52.1
ECA232G0185 Erigeron canadensis HOM05D000304 ORTHO05D000185 6.9e-09 64.3 46 65.2
Potri.006G263600 Populus trichocarpa HOM05D000304 ORTHO05D000185 6.9e-09 64.3 62 54.8
Actinidia25481 Actinidia chinensis HOM05D000304 ORTHO05D000185 9.0e-09 63.9 71 52.1
Ah.01g006930 Amaranthus hybridus HOM05D000304 ORTHO05D000185 1.2e-08 63.5 45 66.7
Ciclev10008930m.g Citrus clementina HOM05D000304 ORTHO05D000185 1.2e-08 63.5 80 42.5
Gohir.A06G182900 Gossypium hirsutum HOM05D000304 ORTHO05D000185 1.2e-08 63.5 63 52.4
Gohir.D06G189700 Gossypium hirsutum HOM05D000304 ORTHO05D000185 1.2e-08 63.5 65 50.8
Gorai.010G222400 Gossypium raimondii HOM05D000304 ORTHO05D000185 1.2e-08 63.5 63 52.4
Manes.04G102600 Manihot esculenta HOM05D000304 ORTHO05D000185 1.2e-08 63.5 62 54.8
Rhsim12G0187400 Rhododendron simsii HOM05D000304 ORTHO05D000185 1.2e-08 63.5 76 44.7
Ciclev10026105m.g Citrus clementina HOM05D000304 ORTHO05D000185 1.5e-08 63.2 66 53.0
Actinidia08945 Actinidia chinensis HOM05D000304 ORTHO05D000185 2.0e-08 62.8 114 34.2
EL10Ac9g22209 Beta vulgaris HOM05D000304 ORTHO05D000185 2.0e-08 62.8 45 66.7
Ca_20544_v3 Cicer arietinum L. HOM05D000304 ORTHO05D000185 2.0e-08 62.8 66 54.5
DCAR_016302 Daucus carota HOM05D000304 ORTHO05D000185 2.0e-08 62.8 77 42.9
Eucgr.J03117 Eucalyptus grandis HOM05D000304 ORTHO05D000185 2.0e-08 62.8 96 37.5
Glyma.13G370100 Glycine max HOM05D000304 ORTHO05D000185 2.0e-08 62.8 69 52.2
Rhsim08G0205900 Rhododendron simsii HOM05D000304 ORTHO05D000185 2.0e-08 62.8 66 50.0
TWI18G0322 Tripterygium wilfordii HOM05D000304 ORTHO05D000185 2.0e-08 62.8 91 41.8
TWI75G1667 Tripterygium wilfordii HOM05D000304 ORTHO05D000185 2.0e-08 62.8 66 51.5
PGR102G3182 Punica granatum HOM05D000304 ORTHO05D000185 2.6e-08 62.4 68 51.5
Migut.I00695 Erythranthe guttata HOM05D000304 ORTHO05D000185 3.4e-08 62.0 72 48.6
Eucgr.F03955 Eucalyptus grandis HOM05D000304 ORTHO05D000185 3.4e-08 62.0 49 57.1
Gohir.D05G120500 Gossypium hirsutum HOM05D000304 ORTHO05D000185 3.4e-08 62.0 70 45.7
Gorai.009G124000 Gossypium raimondii HOM05D000304 ORTHO05D000185 3.4e-08 62.0 70 45.7
Phvul.005G181800 Phaseolus vulgaris HOM05D000304 ORTHO05D000185 3.4e-08 62.0 73 46.6
MSTRG.11179 Avicennia marina HOM05D000304 ORTHO05D000185 4.5e-08 61.6 65 50.8
MSTRG.4681 Avicennia marina HOM05D000304 ORTHO05D000185 4.5e-08 61.6 59 57.6
Phvul.010G161100 Phaseolus vulgaris HOM05D000304 ORTHO05D000185 4.5e-08 61.6 66 53.0
COL.COLO4_26699 Corchorus olitorius HOM05D000304 ORTHO05D000185 5.8e-08 61.2 66 51.5
Glyma.08G218600 Glycine max HOM05D000304 ORTHO05D000185 7.6e-08 60.8 70 54.3
Gohir.A05G119500 Gossypium hirsutum HOM05D000304 ORTHO05D000185 7.6e-08 60.8 44 61.4
vmacro16855 Vaccinium macrocarpon HOM05D000304 ORTHO05D000185 7.6e-08 60.8 89 40.4
arahy.Tifrunner.gnm1.ann1.G729YX Arachis hypogaea HOM05D000304 ORTHO05D000185 9.9e-08 60.5 72 51.4
arahy.Tifrunner.gnm1.ann1.ZEA1CF Arachis hypogaea HOM05D000304 ORTHO05D000185 9.9e-08 60.5 72 51.4
HanXRQChr16g0499381 Helianthus annuus HOM05D000304 ORTHO05D000185 9.9e-08 60.5 71 49.3
Lj3g0026514 Lotus japonicus HOM05D000304 ORTHO05D000185 1.3e-07 60.1 71 49.3
Peaxi162Scf00207g00432 Petunia axillaris HOM05D000304 ORTHO05D000185 1.3e-07 60.1 75 45.3
Hund00435 Selenicereus undatus HOM05D000304 ORTHO05D000185 1.3e-07 60.1 84 44.0
Hund06521 Selenicereus undatus HOM05D000304 ORTHO05D000185 1.3e-07 60.1 54 53.7
Dinv21411 Davidia involucrata HOM05D000304 ORTHO05D000185 1.7e-07 59.7 74 45.9
Oeu028337.1 Olea europaea HOM05D000304 ORTHO05D000185 1.7e-07 59.7 92 42.4
VMungo1080G1468 Vigna mungo HOM05D000304 ORTHO05D000185 1.7e-07 59.7 66 48.5
MELO3C026740.2 Cucumis melo HOM05D000304 ORTHO05D000185 2.2e-07 59.3 82 45.1
Glyma.07G023300 Glycine max HOM05D000304 ORTHO05D000185 2.2e-07 59.3 70 52.9
Lj9A493T68 Lonicera japonica HOM05D000304 ORTHO05D000185 2.9e-07 58.9 72 44.4
Lj3g0024941 Lotus japonicus HOM05D000304 ORTHO05D000185 2.9e-07 58.9 63 49.2
Oeu018281.2 Olea europaea HOM05D000304 ORTHO05D000185 3.8e-07 58.5 61 52.5
VMungo0331G0734 Vigna mungo HOM05D000304 ORTHO05D000185 3.8e-07 58.5 57 52.6
Glyma.06G061900 Glycine max HOM05D000304 ORTHO05D000185 4.9e-07 58.2 69 46.4
Potri.018G019800 Populus trichocarpa HOM05D000304 ORTHO05D000185 4.9e-07 58.2 61 49.2
Thecc.09G016500 Theobroma cacao HOM05D000304 ORTHO05D000185 4.9e-07 58.2 45 57.8
MSTRG.22798 Avicennia marina HOM05D000304 ORTHO05D000185 6.4e-07 57.8 77 42.9
Oeu027828.1 Olea europaea HOM05D000304 ORTHO05D000185 6.4e-07 57.8 56 51.8
vmacro19055 Vaccinium macrocarpon HOM05D000304 ORTHO05D000185 8.4e-07 57.4 63 50.8
GSVIVG01035885001 Vitis vinifera HOM05D000304 ORTHO05D000185 8.4e-07 57.4 46 60.9
BcaC01g01058 Brassica carinata HOM05D000304 ORTHO05D000185 1.1e-06 57.0 57 49.1
C03p87520 Brassica napus HOM05D000304 ORTHO05D000185 1.1e-06 57.0 57 49.1
BolC3t21071H Brassica oleracea HOM05D000304 ORTHO05D000185 1.1e-06 57.0 57 49.1
Duzib168G0998 Durio zibethinus HOM05D000304 ORTHO05D000185 1.1e-06 57.0 67 44.8
Nitab4.5_0002568g0030 Nicotiana tabacum HOM05D000304 ORTHO05D000185 1.1e-06 57.0 42 64.3
Oeu009802.1 Olea europaea HOM05D000304 ORTHO05D000185 1.1e-06 57.0 55 54.5
CAN.G407.64 Capsicum annuum HOM05D000304 ORTHO05D000185 1.4e-06 56.6 66 47.0
CARHR116730 Cardamine hirsuta HOM05D000304 ORTHO05D000185 1.4e-06 56.6 56 50.0
Cfa013065 Carpinus fangiana HOM05D000304 ORTHO05D000185 1.4e-06 56.6 57 49.1
MD17G1223100 Malus domestica HOM05D000304 ORTHO05D000185 1.4e-06 56.6 63 49.2
Oeu051585.1 Olea europaea HOM05D000304 ORTHO05D000185 1.4e-06 56.6 69 44.9
Sabra18G0022300 Salix brachista HOM05D000304 ORTHO05D000185 1.4e-06 56.6 63 46.0
GSVIVG01015952001 Vitis vinifera HOM05D000304 ORTHO05D000185 1.4e-06 56.6 41 63.4
BcaB03g12719 Brassica carinata HOM05D000304 ORTHO05D000185 1.9e-06 56.2 63 46.0
Nitab4.5_0012161g0030 Nicotiana tabacum HOM05D000304 ORTHO05D000185 1.9e-06 56.2 41 63.4
BraA08t33805Z Brassica rapa HOM05D000304 ORTHO05D000185 2.4e-06 55.8 37 70.3
Haze_21425 Corylus avellana HOM05D000304 ORTHO05D000185 2.4e-06 55.8 58 48.3
Lalb_Chr11g0069461 Lupinus albus HOM05D000304 ORTHO05D000185 2.4e-06 55.8 59 49.2
Manes.03G009500 Manihot esculenta HOM05D000304 ORTHO05D000185 2.4e-06 55.8 54 53.7
Aqoxy7G03436 Aquilegia oxysepala HOM05D000304 ORTHO05D000185 3.2e-06 55.5 68 45.6
Lj5A80T53 Lonicera japonica HOM05D000304 ORTHO05D000185 3.2e-06 55.5 68 45.6
Sabra06G0206100 Salix brachista HOM05D000304 ORTHO05D000185 3.2e-06 55.5 62 46.8
SalBow7G0190 Salvia bowleyana HOM05D000304 ORTHO05D000185 3.2e-06 55.5 76 44.7
THA.LOC104819953 Tarenaya hassleriana HOM05D000304 ORTHO05D000185 3.2e-06 55.5 56 53.6
A08p18450 Brassica napus HOM05D000304 ORTHO05D000185 4.2e-06 55.1 56 50.0
TAR383G1105 Trochodendron aralioides HOM05D000304 ORTHO05D000185 4.2e-06 55.1 67 44.8
Lalb_Chr00c36g0408791 Lupinus albus HOM05D000304 ORTHO05D000185 5.5e-06 54.7 69 47.8
Lalb_Chr00c36g0408981 Lupinus albus HOM05D000304 ORTHO05D000185 5.5e-06 54.7 69 47.8
Lalb_Chr04g0264471 Lupinus albus HOM05D000304 ORTHO05D000185 5.5e-06 54.7 86 44.2
Lalb_Chr24g0392901 Lupinus albus HOM05D000304 ORTHO05D000185 5.5e-06 54.7 69 47.8
Medtr2g105060 Medicago truncatula HOM05D000304 ORTHO05D000185 5.5e-06 54.7 67 49.3
Medtr4g007060 Medicago truncatula HOM05D000304 ORTHO05D000185 5.5e-06 54.7 93 41.9
Aa31LG2G18500 Aethionema arabicum HOM05D000304 ORTHO05D000185 7.1e-06 54.3 57 47.4
Gorai.010G118300 Gossypium raimondii HOM05D000304 ORTHO05D000185 7.1e-06 54.3 58 48.3
Lj5g0021733 Lotus japonicus HOM05D000304 ORTHO05D000185 9.3e-06 53.9 65 43.1
THA.LOC104803612 Tarenaya hassleriana HOM05D000304 ORTHO05D000185 9.3e-06 53.9 52 53.8


User provided reference genes

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