Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g25217 Brassica carinata HOM05D006125 ORTHO05D007404 4.1e-53 211.1 102 100.0
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 8.9e-16 87.0 53 81.1
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 3.4e-15 85.1 105 52.4
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 5.8e-15 84.3 55 80.0
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 5.8e-15 84.3 55 80.0
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 5.8e-15 84.3 55 80.0
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 5.8e-15 84.3 55 80.0
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 7.5e-15 84.0 56 78.6
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 1.3e-14 83.2 60 73.3
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 1.3e-14 83.2 60 73.3
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 1.3e-14 83.2 60 73.3
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 2.9e-14 82.0 59 72.9
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 2.9e-14 82.0 58 74.1
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 1.4e-13 79.7 55 72.7
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 3.2e-13 78.6 54 74.1
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 1.6e-12 76.3 61 67.2
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 2.7e-12 75.5 56 75.0
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 2.7e-12 75.5 55 67.3
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 7.8e-12 73.9 53 71.7
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 1.0e-11 73.6 56 69.6
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 1.3e-11 73.2 95 48.4
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 1.7e-11 72.8 61 62.3
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 3.0e-11 72.0 56 66.1
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 3.0e-11 72.0 56 64.3
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 3.0e-11 72.0 55 63.6
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 3.9e-11 71.6 54 64.8
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 5.0e-11 71.2 57 66.7
BolC6t38413H Brassica oleracea HOM05D006125 ORTHO05D007404 5.0e-11 71.2 85 54.1
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 3.3e-10 68.6 57 63.2
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 5.6e-10 67.8 106 42.5
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 1.2e-09 66.6 105 41.9
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 1.2e-09 66.6 39 79.5
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 2.1e-09 65.9 105 41.0
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 2.8e-09 65.5 106 42.5
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 3.6e-09 65.1 105 41.0
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 3.6e-09 65.1 104 40.4
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 4.7e-09 64.7 98 40.8
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 4.7e-09 64.7 98 40.8
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 8.0e-09 63.9 53 58.5
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 1.1e-08 63.5 105 37.1
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 1.4e-08 63.2 105 39.0
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 1.4e-08 63.2 99 41.4
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 2.3e-08 62.4 105 40.0
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 2.3e-08 62.4 105 38.1
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 3.1e-08 62.0 42 66.7
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 3.1e-08 62.0 125 36.8
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 4.0e-08 61.6 53 54.7
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 4.0e-08 61.6 97 38.1
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 4.0e-08 61.6 104 38.5
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 5.2e-08 61.2 100 38.0
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 5.2e-08 61.2 106 35.8
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 5.2e-08 61.2 99 40.4
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 6.8e-08 60.8 105 37.1
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 6.8e-08 60.8 105 40.0
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 6.8e-08 60.8 100 35.0
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 6.8e-08 60.8 99 39.4
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 6.8e-08 60.8 105 37.1
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 1.2e-07 60.1 106 34.9
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 1.2e-07 60.1 102 37.3
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 1.5e-07 59.7 110 36.4
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 2.0e-07 59.3 43 60.5
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 2.0e-07 59.3 56 50.0
BNapus_Darmor_BZH_scaffold_293p00030 Brassica napus HOM05D006125 ORTHO05D007404 2.6e-07 58.9 41 75.6
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 2.6e-07 58.9 102 39.2
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 3.4e-07 58.5 100 39.0
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 3.4e-07 58.5 100 39.0
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 3.4e-07 58.5 100 39.0
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 4.4e-07 58.2 106 37.7
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 4.4e-07 58.2 105 38.1
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 5.8e-07 57.8 101 36.6
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 5.8e-07 57.8 105 36.2
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 9.8e-07 57.0 105 36.2
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 1.3e-06 56.6 94 40.4
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 1.3e-06 56.6 38 68.4
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 1.3e-06 56.6 101 37.6
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 1.7e-06 56.2 122 32.8
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 4.9e-06 54.7 90 37.8
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 4.9e-06 54.7 102 32.4
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 4.9e-06 54.7 90 38.9
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 4.9e-06 54.7 87 36.8
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 4.9e-06 54.7 88 38.6
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 6.4e-06 54.3 62 43.5
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 8.3e-06 53.9 48 56.2
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 8.3e-06 53.9 99 35.4
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 8.3e-06 53.9 104 36.5
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 8.3e-06 53.9 57 49.1
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 8.3e-06 53.9 84 32.1


User provided reference genes

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