Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g25191 Brassica carinata HOM05D007449 ORTHO05D009504 2.3e-87 325.5 159 100.0
BolC2t09646H Brassica oleracea HOM05D007449 ORTHO05D009504 5.7e-86 320.9 159 97.5
BraA02t07273Z Brassica rapa HOM05D007449 ORTHO05D009504 1.3e-85 319.7 159 96.9
C02p36470 Brassica napus HOM05D007449 ORTHO05D009504 2.2e-85 318.9 159 97.5
BcaC03g15880 Brassica carinata HOM05D007449 ORTHO05D009504 1.1e-84 316.6 159 96.9
A02p22730 Brassica napus HOM05D007449 ORTHO05D009504 1.1e-84 316.6 159 96.2
Thhalv10019230m.g Eutrema salsugineum HOM05D007449 ORTHO05D009504 9.7e-78 293.5 156 89.7
Sp5g34340 Schrenkiella parvula HOM05D007449 ORTHO05D009504 9.7e-78 293.5 155 89.0
Carub.0002s2613 Capsella rubella HOM05D007449 ORTHO05D009504 8.2e-77 290.4 156 89.1
AT1G79260 Arabidopsis thaliana HOM05D007449 ORTHO05D009504 1.6e-75 286.2 156 88.5
AL2G39860 Arabidopsis lyrata HOM05D007449 ORTHO05D009504 5.2e-71 271.2 155 84.5
THA.LOC104812400 Tarenaya hassleriana HOM05D007449 ORTHO05D009504 3.2e-65 251.9 156 75.0
Aa31LG4G1730 Aethionema arabicum HOM05D007449 ORTHO05D009504 1.0e-63 246.9 174 70.7
Nn1g09860 Nelumbo nucifera HOM05D007449 ORTHO05D009504 3.0e-63 245.4 155 74.8
SEGI_20644 Sequoiadendron giganteum HOM05D007449 ORTHO05D009504 2.0e-62 242.7 153 73.2
GSVIVG01036691001 Vitis vinifera HOM05D007449 ORTHO05D009504 3.4e-62 241.9 154 74.0
RcHm_v2.0_Chr5g0022981 Rosa chinensis HOM05D007449 ORTHO05D009504 2.8e-61 238.8 155 71.6
CsaV3_6G013330 Cucumis sativus L. HOM05D007449 ORTHO05D009504 8.3e-61 237.3 152 75.0
FvH4_3g13790 Fragaria vesca HOM05D007449 ORTHO05D009504 1.4e-60 236.5 158 69.6
FAN21G0170 Fragaria x ananassa HOM05D007449 ORTHO05D009504 1.4e-60 236.5 158 69.6
MELO3C019608.2 Cucumis melo HOM05D007449 ORTHO05D009504 3.1e-60 235.3 158 71.5
Sabra10G0135300 Salix brachista HOM05D007449 ORTHO05D009504 4.1e-60 235.0 164 72.0
Atru.chr1.9 Acer truncatum HOM05D007449 ORTHO05D009504 5.4e-60 234.6 152 74.3
Sed0001463 Sechium edule HOM05D007449 ORTHO05D009504 7.0e-60 234.2 158 72.2
Glyma.15G266900 Glycine max HOM05D007449 ORTHO05D009504 9.1e-60 233.8 158 73.4
Potri.010G175600 Populus trichocarpa HOM05D007449 ORTHO05D009504 1.2e-59 233.4 164 70.7
COL.COLO4_32270 Corchorus olitorius HOM05D007449 ORTHO05D009504 2.7e-59 232.3 160 69.4
CDE02G1458 Ceratophyllum demersum HOM05D001125 ORTHO05D003189 3.5e-59 231.9 154 70.8
FAN11G1945 Fragaria x ananassa HOM05D007449 ORTHO05D009504 4.5e-59 231.5 159 69.2
Prupe.4G124700 Prunus persica HOM05D007449 ORTHO05D009504 7.7e-59 230.7 157 69.4
Aqoxy5G02136 Aquilegia oxysepala HOM05D007449 ORTHO05D009504 1.0e-58 230.3 165 68.5
Glyma.08G160000 Glycine max HOM05D007449 ORTHO05D009504 1.0e-58 230.3 161 72.0
Hma1.2p1_1417F.1_g282110 Hydrangea macrophylla HOM05D007449 ORTHO05D009504 1.0e-58 230.3 154 70.1
Manes.16G050159 Manihot esculenta HOM05D007449 ORTHO05D009504 1.0e-58 230.3 158 72.2
HPP92_008133 Vanilla planifolia HOM05D007449 ORTHO05D009504 1.3e-58 229.9 154 71.4
Ciclev10006094m.g Citrus clementina HOM05D007449 ORTHO05D009504 1.7e-58 229.6 155 72.9
MBI02_g42634_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 1.7e-58 229.6 152 72.4
HPP92_008185 Vanilla planifolia HOM05D007449 ORTHO05D009504 2.3e-58 229.2 154 70.8
ClCG02G018850 Citrullus lanatus HOM05D007449 ORTHO05D009504 3.8e-58 228.4 153 73.2
MD05G1240900 Malus domestica HOM05D007449 ORTHO05D009504 6.6e-58 227.6 160 68.1
CANSAT56G2387 Cannabis sativa HOM05D007449 ORTHO05D009504 8.6e-58 227.3 153 71.9
Os01g0679600 Oryza sativa ssp. japonica HOM05D007449 ORTHO05D009504 1.1e-57 226.9 159 67.3
Psat6g047080 Pisum sativum HOM05D007449 ORTHO05D009504 1.9e-57 226.1 155 72.3
AagrBONN_evm.TU.Sc2ySwM_362.2319 Anthoceros agrestis HOM05D007449 ORTHO05D009504 3.3e-57 225.3 152 69.7
Dinv42450 Davidia involucrata HOM05D007449 ORTHO05D009504 3.3e-57 225.3 159 68.6
HanXRQChr11g0335831 Helianthus annuus HOM05D007449 ORTHO05D009504 4.2e-57 224.9 153 69.9
FAN16G1652 Fragaria x ananassa HOM05D007449 ORTHO05D009504 5.5e-57 224.6 159 67.3
Lsat_1_v5_gn_7_111001 Lactuca sativa HOM05D007449 ORTHO05D009504 7.2e-57 224.2 153 69.9
Lalb_Chr01g0015631 Lupinus albus HOM05D007449 ORTHO05D009504 7.2e-57 224.2 159 69.2
Zm00001eb156770 Zea mays HOM05D007449 ORTHO05D009504 7.2e-57 224.2 152 68.4
CSS0049228 Camellia sinensis var. sinensis HOM05D007449 ORTHO05D009504 9.5e-57 223.8 153 69.3
ECA236G3627 Erigeron canadensis HOM05D007449 ORTHO05D009504 1.2e-56 223.4 153 69.9
arahy.Tifrunner.gnm1.ann1.4RN51I Arachis hypogaea HOM05D007449 ORTHO05D009504 3.6e-56 221.9 157 70.7
arahy.Tifrunner.gnm1.ann1.VWXD6N Arachis hypogaea HOM05D007449 ORTHO05D009504 3.6e-56 221.9 157 70.7
Duzib213G0878 Durio zibethinus HOM05D007449 ORTHO05D009504 3.6e-56 221.9 157 68.8
Gohir.D13G131200 Gossypium hirsutum HOM05D007449 ORTHO05D009504 6.1e-56 221.1 157 67.5
Medtr1g046590 Medicago truncatula HOM05D007449 ORTHO05D009504 6.1e-56 221.1 157 71.3
Gohir.A13G127500 Gossypium hirsutum HOM05D007449 ORTHO05D009504 1.8e-55 219.5 157 66.9
Cfa017774 Carpinus fangiana HOM05D007449 ORTHO05D009504 3.0e-55 218.8 157 66.2
Migut.H01650 Erythranthe guttata HOM05D007449 ORTHO05D009504 3.0e-55 218.8 166 64.5
Gorai.013G147200 Gossypium raimondii HOM05D007449 ORTHO05D009504 4.0e-55 218.4 157 66.9
CiPaw.15G111100 Carya illinoinensis HOM05D007449 ORTHO05D009504 5.2e-55 218.0 153 68.0
TAR629G0115 Trochodendron aralioides HOM05D007449 ORTHO05D009504 6.8e-55 217.6 191 56.5
SGA_v2.0_scaffold49G18211 Striga asiatica HOM05D007449 ORTHO05D009504 8.9e-55 217.2 153 68.0
MSTRG.13092 Avicennia marina HOM05D007449 ORTHO05D009504 2.6e-54 215.7 164 64.0
Nitab4.5_0005124g0020 Nicotiana tabacum HOM05D007449 ORTHO05D009504 3.4e-54 215.3 158 65.8
Nitab4.5_0006598g0010 Nicotiana tabacum HOM05D007449 ORTHO05D009504 7.5e-54 214.2 158 65.8
ATR0109G018 Amborella trichopoda HOM05D007449 ORTHO05D009504 1.3e-53 213.4 164 65.2
SMO364G0724 Selaginella moellendorffii HOM05D007449 ORTHO05D009504 6.3e-53 211.1 156 65.4
PGSC0003DMG400013314 Solanum tuberosum HOM05D007449 ORTHO05D009504 8.3e-53 210.7 153 66.0
TPR.G11303 Trifolium pratense HOM05D007449 ORTHO05D009504 8.3e-53 210.7 152 69.1
CAN.G222.124 Capsicum annuum HOM05D007449 ORTHO05D009504 1.1e-52 210.3 153 66.7
Solyc11g011610.2 Solanum lycopersicum HOM05D007449 ORTHO05D009504 2.4e-52 209.1 153 65.4
Peaxi162Scf00124g01733 Petunia axillaris HOM05D007449 ORTHO05D009504 3.2e-52 208.8 153 66.0
TWI38G0722 Tripterygium wilfordii HOM05D007449 ORTHO05D009504 4.1e-52 208.4 164 62.8
TWI38G2117 Tripterygium wilfordii HOM05D007449 ORTHO05D009504 4.1e-52 208.4 164 62.8
Sopen11g006460 Solanum pennellii HOM05D007449 ORTHO05D009504 5.4e-52 208.0 153 65.4
Nitab4.5_0001438g0030 Nicotiana tabacum HOM05D007449 ORTHO05D009504 7.0e-52 207.6 158 63.3
PGR031G0327 Punica granatum HOM05D007449 ORTHO05D009504 1.2e-51 206.8 159 65.4
Cc08_g13080 Coffea canephora HOM05D007449 ORTHO05D009504 2.0e-51 206.1 159 64.2
Solyc11g011620.3 Solanum lycopersicum HOM05D007449 ORTHO05D009504 3.5e-51 205.3 151 64.2
Rhsim10G0133000 Rhododendron simsii HOM05D007449 ORTHO05D009504 4.6e-51 204.9 193 56.0
Mapoly0054s0111 Marchantia polymorpha HOM05D007449 ORTHO05D009504 3.9e-50 201.8 150 63.3
Oeu002792.1 Olea europaea HOM05D007449 ORTHO05D009775 2.5e-49 199.1 157 61.8
Phvul.005G043600 Phaseolus vulgaris HOM05D007449 ORTHO05D009504 2.5e-49 199.1 159 64.8
vmacro12790 Vaccinium macrocarpon HOM05D007449 ORTHO05D009504 2.1e-48 196.1 227 48.5
Actinidia33338 Actinidia chinensis HOM05D007449 ORTHO05D009504 3.4e-46 188.7 133 68.4
Eucgr.F04482 Eucalyptus grandis HOM05D007449 ORTHO05D009504 1.7e-45 186.4 150 61.3
Pp3c6_12570 Physcomitrium patens HOM05D007449 ORTHO05D009504 4.1e-44 181.8 115 70.4
arahy.Tifrunner.gnm1.ann1.FIRH26 Arachis hypogaea HOM05D007449 ORTHO05D009504 3.5e-43 178.7 121 71.9
QL04p096050 Quercus lobata HOM05D007449 ORTHO05D009504 1.0e-42 177.2 123 69.1
QL04p096242 Quercus lobata HOM05D007449 ORTHO05D009504 1.0e-42 177.2 114 72.8
Haze_18462 Corylus avellana HOM05D007449 ORTHO05D009504 7.3e-41 171.0 113 70.8
Nitab4.5_0009898g0010 Nicotiana tabacum HOM05D007449 ORTHO05D009504 6.2e-40 167.9 157 56.1
Ca_03327_v3 Cicer arietinum L. HOM05D007449 ORTHO05D009504 3.7e-37 158.7 110 70.9
MBI02_g17887_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 1.2e-35 153.7 152 55.3
FAN25G3406 Fragaria x ananassa HOM05D007449 ORTHO05D009504 7.8e-35 151.0 108 67.6
DCAR_013701 Daucus carota HOM05D007449 ORTHO05D009504 1.0e-34 150.6 89 79.8
Lj2A6T27 Lonicera japonica HOM05D007449 ORTHO05D009504 5.6e-33 144.8 90 73.3
Aa31LG4G1740 Aethionema arabicum HOM05D007449 ORTHO05D009504 1.1e-31 140.6 155 48.4
Nitab4.5_0001650g0100 Nicotiana tabacum HOM05D000057 ORTHO05D000021 4.4e-22 108.6 72 69.4
Nitab4.5_0007284g0070 Nicotiana tabacum HOM05D000057 ORTHO05D000021 6.6e-18 94.7 95 53.7
TPR.G35695 Trifolium pratense HOM05D000290 ORTHO05D044376 5.4e-12 75.1 61 62.3
MBI02_g30541_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 3.0e-10 69.3 81 50.6
Glyma.14G034600 Glycine max HOM05D007449 ORTHO05D009504 1.1e-09 67.4 45 64.4
Gohir.D03G088000 Gossypium hirsutum HOM05D007449 ORTHO05D000032 7.3e-09 64.7 53 58.5


User provided reference genes

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