Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 8.4e-232 806.6 390 100.0
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 6.8e-173 610.9 320 90.0
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 6.8e-173 610.9 320 90.0
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 6.8e-173 610.9 320 90.0
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 2.0e-172 609.4 320 92.8
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 4.4e-172 608.2 320 89.7
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 4.4e-172 608.2 320 89.7
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 5.7e-172 607.8 320 90.3
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 2.4e-170 602.4 320 91.2
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 5.9e-169 597.8 320 90.3
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 1.3e-168 596.7 318 90.6
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 2.9e-168 595.5 320 90.3
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 3.2e-167 592.0 320 90.0
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 1.2e-166 590.1 319 90.3
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 2.1e-166 589.3 319 89.7
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 8.8e-165 583.9 319 88.4
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 2.8e-163 578.9 319 87.8
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 2.7e-161 572.4 319 87.5
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 7.2e-159 564.3 318 85.5
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 4.7e-158 561.6 318 85.5
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 6.1e-158 561.2 318 85.2
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 3.0e-157 558.9 319 84.6
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 4.0e-157 558.5 317 85.5
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 2.2e-155 552.7 318 84.6
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 1.1e-154 550.4 318 84.3
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 1.6e-153 546.6 318 83.0
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 3.5e-153 545.4 318 80.8
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 3.5e-153 545.4 318 82.1
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 7.8e-153 544.3 318 80.5
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 3.9e-152 542.0 319 80.6
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 8.6e-152 540.8 317 80.4
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 1.5e-151 540.0 317 80.8
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 1.9e-151 539.7 318 79.9
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 2.5e-151 539.3 310 81.6
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 2.5e-151 539.3 317 80.4
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 5.6e-151 538.1 317 80.4
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 7.3e-151 537.7 317 81.1
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 7.3e-151 537.7 312 81.1
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 9.5e-151 537.3 313 80.8
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 1.6e-150 536.6 319 80.3
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 2.8e-150 535.8 318 78.3
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 6.1e-150 534.6 318 79.9
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 6.1e-150 534.6 317 80.8
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 2.3e-149 532.7 317 80.8
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 2.3e-149 532.7 318 79.9
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 3.1e-149 532.3 314 80.6
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 3.1e-149 532.3 318 79.9
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 3.1e-149 532.3 318 79.2
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 3.1e-149 532.3 321 80.7
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 4.0e-149 531.9 317 78.5
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 5.2e-149 531.6 318 78.0
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 6.8e-149 531.2 318 79.9
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 6.8e-149 531.2 318 78.9
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 1.2e-148 530.4 318 78.6
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 1.2e-148 530.4 317 80.1
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 1.2e-148 530.4 317 80.4
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 1.5e-148 530.0 319 81.2
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 1.5e-148 530.0 318 80.2
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 1.5e-148 530.0 316 79.4
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 2.0e-148 529.6 319 81.5
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 2.0e-148 529.6 318 79.9
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 2.0e-148 529.6 317 79.2
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 2.6e-148 529.3 318 78.6
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 3.4e-148 528.9 317 79.5
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 4.4e-148 528.5 318 78.6
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 4.4e-148 528.5 317 79.5
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 5.8e-148 528.1 318 78.0
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 5.8e-148 528.1 317 78.5
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 9.8e-148 527.3 308 81.8
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 9.8e-148 527.3 308 81.8
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 1.3e-147 526.9 318 78.9
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.3e-147 526.9 317 79.8
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 1.3e-147 526.9 316 77.8
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.2e-147 526.2 318 78.3
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 2.2e-147 526.2 314 79.9
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 2.2e-147 526.2 318 78.0
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 2.2e-147 526.2 343 74.3
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.9e-147 525.8 318 78.0
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 2.9e-147 525.8 317 79.8
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 3.7e-147 525.4 317 78.5
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 6.4e-147 524.6 317 78.9
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 6.4e-147 524.6 318 78.3
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 1.1e-146 523.9 318 78.6
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 1.4e-146 523.5 310 80.6
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 1.4e-146 523.5 318 78.6
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 3.2e-146 522.3 317 79.2
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 5.4e-146 521.5 316 79.1
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 7.0e-146 521.2 317 77.9
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 7.0e-146 521.2 317 79.2
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 7.0e-146 521.2 316 78.5
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 9.2e-146 520.8 318 76.4
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 2.0e-145 519.6 299 79.9
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 3.5e-145 518.8 316 76.9
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 7.8e-145 517.7 336 74.7
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 1.3e-144 516.9 335 74.9
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 2.3e-144 516.2 318 77.4
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 3.0e-144 515.8 307 79.5
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 3.0e-144 515.8 316 76.6
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 3.9e-144 515.4 316 75.9
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 1.1e-143 513.8 307 79.2
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 9.5e-143 510.8 317 76.3
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 4.7e-142 508.4 314 75.2
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 1.1e-141 507.3 325 74.2
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 2.3e-141 506.1 297 80.1
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 5.2e-141 505.0 329 73.3
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 3.4e-140 502.3 344 71.5
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 1.1e-138 497.3 318 75.2
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 5.4e-138 495.0 314 75.5
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 5.4e-138 495.0 305 75.1
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 1.1e-135 487.3 298 74.5
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 7.3e-135 484.6 322 77.3
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 1.2e-134 483.8 258 90.3
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 1.2e-134 483.8 258 90.3
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 4.7e-134 481.9 319 74.3
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 6.2e-134 481.5 318 73.0
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 2.3e-133 479.6 289 79.9
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 6.8e-133 478.0 315 72.7
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 2.0e-132 476.5 309 71.5
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 5.8e-132 474.9 282 80.9
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 2.2e-131 473.0 283 80.2
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 1.4e-130 470.3 324 71.3
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 8.6e-128 461.1 318 70.1
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 3.6e-126 455.7 283 78.4
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 3.6e-126 455.7 309 68.9
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 4.7e-126 455.3 317 70.3
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 8.1e-126 454.5 293 72.4
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.7e-123 446.8 266 82.0
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 2.7e-121 439.5 294 67.3
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 1.3e-118 430.6 266 77.4
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 4.8e-118 428.7 242 83.1
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 5.3e-117 425.2 270 76.3
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 3.4e-116 422.5 316 62.7
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 5.1e-112 408.7 298 64.4
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 1.9e-111 406.8 325 59.1
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 1.1e-109 401.0 265 74.0
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 4.2e-106 389.0 323 59.4
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 3.9e-104 382.5 254 74.8
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.3e-102 377.5 226 76.5
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 3.7e-102 375.9 266 72.6
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 2.2e-99 366.7 291 59.8
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 6.0e-97 358.6 221 78.7
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 3.0e-96 356.3 305 58.4
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.2e-89 334.3 226 69.9
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 2.1e-89 333.6 348 56.3
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 3.0e-88 329.7 304 58.6
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 1.9e-87 327.0 195 77.9
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 4.8e-86 322.4 195 75.9
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 1.7e-83 313.9 175 86.3
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 2.3e-80 303.5 219 73.1
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 5.1e-72 275.8 197 72.1
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 8.8e-72 275.0 356 44.4
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 1.0e-67 261.5 297 46.5
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 1.4e-64 251.1 300 43.3
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 6.7e-64 248.8 116 100.0
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 1.3e-59 234.6 302 43.0
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 1.3e-51 208.0 153 69.3
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 6.8e-48 195.7 124 74.2
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 1.7e-43 181.0 322 37.3
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 2.3e-40 170.6 132 68.9
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 6.8e-40 169.1 95 87.4
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 4.4e-39 166.4 92 88.0
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 7.5e-39 165.6 132 67.4
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 4.9e-38 162.9 92 85.9
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 6.4e-38 162.5 132 65.9
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 4.6e-36 156.4 94 81.9
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 1.0e-35 155.2 123 67.5
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 1.7e-30 137.9 98 72.4
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 2.5e-26 124.0 66 86.4
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 3.3e-26 123.6 134 56.7
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 1.2e-25 121.7 92 70.7
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 2.6e-23 114.0 78 65.4
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 2.9e-22 110.5 69 69.6
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 6.4e-22 109.4 312 28.2
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 1.3e-19 101.7 117 53.0
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 3.9e-19 100.1 67 65.7
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 5.6e-18 96.3 51 88.2
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 1.3e-14 85.1 259 29.0
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 7.1e-13 79.3 41 87.8
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 7.1e-13 79.3 44 84.1
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 7.1e-13 79.3 44 84.1
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 2.3e-11 74.3 45 73.3
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 1.1e-10 72.0 47 72.3
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 3.4e-07 60.5 33 87.9


User provided reference genes

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