Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 2539.2 1312 100.0
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 2270.7 1322 90.1
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 0.0e+00 2265.7 1324 90.0
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 2243.4 1322 89.5
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 0.0e+00 2236.8 1321 89.1
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 2228.8 1322 88.7
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 0.0e+00 2133.6 1339 83.5
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 0.0e+00 2097.4 1341 83.1
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 0.0e+00 2092.0 1336 83.1
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 0.0e+00 1939.1 1350 76.1
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 0.0e+00 1748.4 1356 69.1
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 0.0e+00 1676.8 1008 86.5
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1479.2 1390 58.3
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1436.4 1366 57.6
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 0.0e+00 1435.2 1351 58.9
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1432.9 1367 57.6
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1431.8 1349 58.1
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 0.0e+00 1427.9 1366 57.4
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1427.9 1359 57.2
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 0.0e+00 1422.5 1398 57.0
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1422.1 1366 57.3
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 0.0e+00 1420.2 1364 56.4
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1417.5 1349 57.8
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 0.0e+00 1400.6 1393 55.4
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 0.0e+00 1393.3 1355 57.3
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 0.0e+00 1377.5 1333 57.2
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 0.0e+00 1372.8 1420 54.0
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 0.0e+00 1362.4 1352 55.3
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1361.7 1353 55.6
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 0.0e+00 1355.9 1379 55.5
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 0.0e+00 1354.7 1376 54.5
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 0.0e+00 1347.0 1371 53.9
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 0.0e+00 1343.2 1352 55.2
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 0.0e+00 1335.5 1386 53.5
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1329.7 1368 53.2
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 0.0e+00 1328.9 1362 55.4
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 0.0e+00 1323.5 1378 54.6
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 0.0e+00 1320.1 1439 52.0
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 0.0e+00 1316.6 1333 55.4
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 0.0e+00 1315.1 1357 54.2
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 0.0e+00 1312.0 1300 54.2
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 0.0e+00 1308.5 1395 51.5
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1302.0 1362 52.9
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 0.0e+00 1301.6 1361 53.5
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 0.0e+00 1298.1 1349 52.9
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 0.0e+00 1297.7 1348 54.4
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 0.0e+00 1297.3 1350 54.1
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 0.0e+00 1296.2 1352 52.5
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 0.0e+00 1291.6 1301 54.0
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 0.0e+00 1290.8 1369 52.7
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 0.0e+00 1289.6 802 84.2
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 0.0e+00 1286.2 1377 52.4
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 0.0e+00 1285.8 1353 53.4
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 0.0e+00 1282.3 1338 52.9
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1280.8 1387 52.5
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 0.0e+00 1279.2 1329 54.0
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1276.9 1344 53.0
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1276.5 1369 52.8
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 0.0e+00 1275.4 1358 53.8
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 0.0e+00 1273.8 1326 54.8
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 0.0e+00 1273.1 1333 52.9
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1272.3 1335 53.4
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 0.0e+00 1264.6 1315 53.2
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1260.0 1365 52.6
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 0.0e+00 1255.0 1203 56.5
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1245.0 1454 49.4
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 0.0e+00 1244.6 1385 50.3
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 0.0e+00 1243.8 1371 51.5
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1224.2 1374 50.0
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1216.1 1365 50.2
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 0.0e+00 1194.1 1352 51.4
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 0.0e+00 1193.7 1336 50.6
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 0.0e+00 1177.5 725 85.0
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1171.4 1535 46.8
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 0.0e+00 1166.8 1362 49.3
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 0.0e+00 1163.3 1371 47.6
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1120.1 1332 48.6
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 0.0e+00 1112.4 1346 47.2
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1106.3 1593 44.4
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 0.0e+00 1090.1 1118 54.9
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 0.0e+00 1089.3 1336 48.7
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 3.0e-289 999.2 1092 51.5
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 4.2e-275 952.2 977 54.5
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 2.2e-268 929.9 1135 46.3
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.2e-261 907.5 994 50.5
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 2.6e-261 906.4 1010 52.0
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 4.3e-248 862.4 1331 41.1
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 2.1e-234 817.0 540 80.2
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 7.2e-227 792.0 540 78.5
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 4.5e-221 772.7 826 53.6
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 5.2e-217 759.2 695 58.4
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 2.0e-213 747.3 802 51.5
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 6.2e-186 656.0 1313 36.1
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 1.4e-182 644.8 1381 34.0
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 3.0e-164 583.9 1375 32.0
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 3.4e-152 543.9 528 54.7
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 7.1e-150 536.2 585 51.6
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 1.4e-137 495.4 447 59.1
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 1.8e-137 495.0 448 60.9
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.9e-135 487.6 667 43.2
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 2.5e-126 458.0 983 33.7
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 3.3e-123 447.6 399 61.2
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 2.4e-113 414.8 344 62.2
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.6e-101 375.6 471 44.4
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 2.8e-90 338.2 534 42.3
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 7.5e-83 313.5 809 32.8
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 6.3e-82 310.5 352 51.7
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 7.8e-80 303.5 456 41.0
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 3.8e-79 301.2 270 58.5
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 8.0e-69 266.9 352 45.5
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.2e-67 263.1 443 38.1
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 6.2e-61 240.7 178 77.5
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 4.4e-59 234.6 160 70.6
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.4e-57 229.6 354 41.0
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 5.1e-55 221.1 229 53.7
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 4.0e-52 211.5 138 71.7
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 2.0e-51 209.1 394 37.6
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 3.2e-49 201.8 249 45.8
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 4.6e-48 198.0 1011 24.8
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 1.3e-47 196.4 193 56.5
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 1.7e-47 196.1 149 66.4
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 1.9e-46 192.6 144 66.7
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 4.3e-46 191.4 235 47.7
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 2.4e-44 185.7 260 41.9
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 1.5e-43 183.0 209 50.7
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 3.0e-39 168.7 1163 24.5
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 6.2e-37 161.0 183 50.8
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 3.1e-36 158.7 142 57.7
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 9.0e-36 157.1 688 25.0
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 8.1e-29 134.0 413 28.3
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 1.8e-28 132.9 143 52.4
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 3.1e-28 132.1 133 49.6
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 1.0e-26 127.1 207 42.5
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.5e-22 113.2 85 63.5
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 2.5e-22 112.5 232 34.5
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 3.3e-22 112.1 90 61.1
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 8.2e-21 107.5 132 46.2
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 3.1e-20 105.5 77 62.3
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.2e-19 103.6 259 30.9
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 1.3e-18 100.1 148 41.9
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 2.2e-18 99.4 175 39.4
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 2.9e-18 99.0 505 25.5
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 3.8e-18 98.6 99 48.5
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 6.5e-18 97.8 95 51.6
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.2e-16 93.6 120 49.2
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 2.7e-16 92.4 88 55.7
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 8.7e-15 87.4 121 45.5
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 1.3e-13 83.6 71 62.0
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.5e-11 76.6 105 40.0
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 5.9e-11 74.7 56 66.1
MD10G1205600 Malus domestica HOM05D004277 ORTHO05D005148 1.7e-10 73.2 64 59.4
Zm00001eb329120 Zea mays HOM05D002219 ORTHO05D012612 5.0e-10 71.6 95 43.2
BcaC08g47482 Brassica carinata HOM05D000008 ORTHO05D000005 2.5e-09 69.3 41 87.8
FAN06G0062 Fragaria x ananassa HOM05D016453 ORTHO05D017011 4.2e-09 68.6 144 39.6
Zm00001eb307980 Zea mays HOM05D004277 ORTHO05D005148 7.2e-09 67.8 100 43.0
FAN12G1216 Fragaria x ananassa HOM05D016453 ORTHO05D017011 9.4e-09 67.4 144 39.6
Actinidia07374 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.6e-08 66.6 134 36.6
Zm00001eb086610 Zea mays HOM05D004277 ORTHO05D005148 1.6e-08 66.6 100 43.0
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 3.6e-08 65.5 109 38.5
SHI21618 Sapria himalayana HOM05D004277 ORTHO05D005148 7.9e-08 64.3 63 55.6
Actinidia07381 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.8e-07 63.2 132 36.4
FvH4_7g12450 Fragaria vesca HOM05D016453 ORTHO05D017011 6.7e-07 61.2 108 44.4
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.5e-06 60.1 131 30.5
FAN06G4064 Fragaria x ananassa HOM05D016453 ORTHO05D017011 1.5e-06 60.1 108 43.5


User provided reference genes

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