Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g25174 Brassica carinata HOM05D011693 ORTHO05D017562 6.8e-62 240.4 110 100.0
C02p36240 Brassica napus HOM05D011693 ORTHO05D017562 2.1e-47 192.2 146 65.8
BolC2t09637H Brassica oleracea HOM05D011693 ORTHO05D017562 2.1e-47 192.2 146 65.8
A02p22580 Brassica napus HOM05D011693 ORTHO05D017562 4.4e-45 184.5 146 63.7
BraA02t07262Z Brassica rapa HOM05D011693 ORTHO05D017562 4.4e-45 184.5 146 63.7
A02p22560 Brassica napus HOM05D011693 ORTHO05D017562 7.3e-40 167.2 143 58.7
BraA02t07261Z Brassica rapa HOM05D011693 ORTHO05D017562 7.3e-40 167.2 143 58.7
BolC2t09634H Brassica oleracea HOM05D011693 ORTHO05D017562 2.8e-39 165.2 143 57.3
C02p36200 Brassica napus HOM05D011693 ORTHO05D017562 1.4e-38 162.9 143 57.3
BcaB05g25172 Brassica carinata HOM05D011693 ORTHO05D023959 6.4e-20 100.9 149 40.3
A02p22610 Brassica napus HOM05D011693 ORTHO05D023959 1.0e-17 93.6 150 39.3
A02p22640 Brassica napus HOM05D011693 ORTHO05D040107 2.5e-16 89.0 148 36.5
CARHR102040 Cardamine hirsuta HOM05D004904 ORTHO05D012610 9.9e-13 77.0 138 33.3
BraA07t30372Z Brassica rapa HOM05D004904 ORTHO05D012610 2.9e-12 75.5 150 32.0
BolC6t38173H Brassica oleracea HOM05D004904 ORTHO05D012610 4.9e-12 74.7 149 32.2
CARHR102030 Cardamine hirsuta HOM05D004904 ORTHO05D012610 4.2e-11 71.6 144 30.6
C06p30060 Brassica napus HOM05D004904 ORTHO05D012610 1.2e-10 70.1 150 31.3
BolC6t38167H Brassica oleracea HOM05D004904 ORTHO05D012610 1.2e-10 70.1 150 31.3
Thhalv10002725m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 1.2e-10 70.1 129 35.7
BolC2t12283H Brassica oleracea HOM05D004904 ORTHO05D010762 3.5e-10 68.6 134 31.3
AT1G51240 Arabidopsis thaliana HOM05D004904 ORTHO05D012458 6.0e-10 67.8 138 33.3
A07p27280 Brassica napus HOM05D004904 ORTHO05D012610 6.0e-10 67.8 150 30.7
BraA07t30371Z Brassica rapa HOM05D004904 ORTHO05D012610 6.0e-10 67.8 150 30.7
Carub.0001s4014 Capsella rubella HOM05D004904 ORTHO05D012458 6.0e-10 67.8 137 32.8
Thhalv10005414m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 6.0e-10 67.8 134 33.6
A02p42370 Brassica napus HOM05D004904 ORTHO05D010762 7.8e-10 67.4 134 31.3
BraA02t09168Z Brassica rapa HOM05D004904 ORTHO05D010762 7.8e-10 67.4 134 31.3
Thhalv10005700m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 2.3e-09 65.9 134 32.1
C08p44310 Brassica napus HOM05D004904 ORTHO05D012458 3.0e-09 65.5 145 29.0
BolC8t51974H Brassica oleracea HOM05D004904 ORTHO05D012458 3.0e-09 65.5 145 29.0
AL1G59040 Arabidopsis lyrata HOM05D004904 ORTHO05D012458 5.1e-09 64.7 124 33.9
Carub.0001s4015 Capsella rubella HOM05D004904 ORTHO05D012458 5.1e-09 64.7 137 30.7
Thhalv10023169m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 5.1e-09 64.7 107 34.6
C08p44250 Brassica napus HOM05D004904 ORTHO05D012458 1.9e-08 62.8 145 30.3
BraA09t41446Z Brassica rapa HOM05D004904 ORTHO05D012458 2.5e-08 62.4 145 28.3
CARHR041320 Cardamine hirsuta HOM05D004904 ORTHO05D012458 2.5e-08 62.4 139 30.9
CARHR220080 Cardamine hirsuta HOM05D004904 ORTHO05D012458 2.5e-08 62.4 142 28.2
C06p30120 Brassica napus HOM05D004904 ORTHO05D012610 4.3e-08 61.6 77 40.3
CARHR216110 Cardamine hirsuta HOM05D004904 ORTHO05D010762 5.6e-08 61.2 135 32.6
Thhalv10026508m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 5.6e-08 61.2 140 31.4
CARHR057800 Cardamine hirsuta HOM05D004904 ORTHO05D010762 7.3e-08 60.8 136 33.1
AL1G57680 Arabidopsis lyrata HOM05D004904 ORTHO05D012458 1.3e-07 60.1 135 30.4
AT2G04115 Arabidopsis thaliana HOM05D004904 ORTHO05D012610 1.6e-07 59.7 135 31.1
Carub.0007s2940 Capsella rubella HOM05D004904 ORTHO05D010762 1.6e-07 59.7 133 32.3
Thhalv10029524m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 2.1e-07 59.3 135 28.9
Carub.0007s2938 Capsella rubella HOM05D004904 ORTHO05D010762 2.8e-07 58.9 138 31.9
C07p62040 Brassica napus HOM05D004904 ORTHO05D012458 4.8e-07 58.2 137 30.7
Carub.0003s2589 Capsella rubella HOM05D004904 ORTHO05D012610 4.8e-07 58.2 135 29.6
CARHR216060 Cardamine hirsuta HOM05D004904 ORTHO05D010762 4.8e-07 58.2 135 30.4
Thhalv10005113m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 6.2e-07 57.8 134 31.3
A07p27310 Brassica napus HOM05D004904 ORTHO05D012610 8.1e-07 57.4 74 36.5
BraA09t41901Z Brassica rapa HOM05D004904 ORTHO05D015396 8.1e-07 57.4 145 30.3
BraA09t41444Z Brassica rapa HOM05D004904 ORTHO05D012458 1.1e-06 57.0 136 29.4
Carub.0002s1683 Capsella rubella HOM05D004904 ORTHO05D012993 1.1e-06 57.0 134 27.6
BcaC08g45375 Brassica carinata HOM05D004904 ORTHO05D012610 1.4e-06 56.6 74 37.8
BcaC07g41901 Brassica carinata HOM05D004904 ORTHO05D015396 1.8e-06 56.2 145 28.3
BcaC07g41902 Brassica carinata HOM05D004904 ORTHO05D015396 1.8e-06 56.2 145 28.3
BolC4t25152H Brassica oleracea HOM05D004904 ORTHO05D012458 1.8e-06 56.2 145 29.0
Thhalv10015293m.g Eutrema salsugineum HOM05D004904 ORTHO05D015396 2.4e-06 55.8 142 28.2
C08p49560 Brassica napus HOM05D004904 ORTHO05D015396 3.1e-06 55.5 145 28.3
BolC8t52492H Brassica oleracea HOM05D004904 ORTHO05D015396 3.1e-06 55.5 145 28.3
CARHR216070 Cardamine hirsuta HOM05D004904 ORTHO05D010762 3.1e-06 55.5 136 30.9
BraA04t16123Z Brassica rapa HOM05D004904 ORTHO05D012458 4.0e-06 55.1 136 28.7
C07p62020 Brassica napus HOM05D004904 ORTHO05D012458 5.3e-06 54.7 136 29.4
AT1G09245 Arabidopsis thaliana HOM05D004904 ORTHO05D015396 6.9e-06 54.3 137 29.2


User provided reference genes

Program Settings