Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g25154 Brassica carinata HOM05D004141 ORTHO05D005416 1.3e-73 279.6 142 100.0
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 4.2e-48 194.9 146 71.2
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 3.0e-46 188.7 146 69.2
Carub.0002s2562 Capsella rubella HOM05D004141 ORTHO05D005416 5.7e-45 184.5 146 67.8
AL2G39200 Arabidopsis lyrata HOM05D004141 ORTHO05D005416 9.7e-45 183.7 146 67.1
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 3.7e-44 181.8 147 68.0
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 4.8e-44 181.4 157 65.0
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 1.1e-43 180.3 147 67.3
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 1.1e-43 180.3 147 66.0
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 1.1e-43 180.3 147 67.3
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 1.1e-43 180.3 147 67.3
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 1.1e-43 180.3 147 66.0
THA.LOC104812317 Tarenaya hassleriana HOM05D004141 ORTHO05D005416 7.7e-42 174.1 146 63.0
TWI31G0451 Tripterygium wilfordii HOM05D004141 ORTHO05D005416 1.0e-41 173.7 155 58.7
Ciclev10020399m.g Citrus clementina HOM05D004141 ORTHO05D005416 8.5e-41 170.6 155 58.7
Atru.chr3.1550 Acer truncatum HOM05D004141 ORTHO05D005416 7.2e-40 167.5 155 58.1
Cpa.g.sc77.17 Carica papaya HOM05D004141 ORTHO05D005416 9.4e-40 167.2 155 57.4
Duzib213G0637 Durio zibethinus HOM05D004141 ORTHO05D005416 1.6e-39 166.4 156 56.4
CiPaw.11G159700 Carya illinoinensis HOM05D004141 ORTHO05D005416 2.7e-39 165.6 155 56.1
Thecc.07G117900 Theobroma cacao HOM05D004141 ORTHO05D005416 2.7e-39 165.6 156 55.8
COL.COLO4_17535 Corchorus olitorius HOM05D004141 ORTHO05D005416 4.7e-39 164.9 155 55.5
Duzib213G0227 Durio zibethinus HOM05D004141 ORTHO05D005416 4.7e-39 164.9 156 55.8
Atru.chr2.2126 Acer truncatum HOM05D004141 ORTHO05D005416 1.0e-38 163.7 155 57.4
QL06p023676 Quercus lobata HOM05D004141 ORTHO05D005416 3.0e-38 162.2 155 56.1
Potri.011G109000 Populus trichocarpa HOM05D004141 ORTHO05D005416 6.7e-38 161.0 155 53.5
CANSAT78G1263 Cannabis sativa HOM05D004141 ORTHO05D005416 2.0e-37 159.5 155 54.8
MBI14_g32936_MAGBIO Magnolia biondii HOM05D004141 ORTHO05D005416 2.0e-37 159.5 151 57.0
Hma1.2p1_1016F.1_g248060 Hydrangea macrophylla HOM05D004141 ORTHO05D005416 2.6e-37 159.1 155 54.8
Thhalv10007837m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 4.4e-37 158.3 138 60.9
TAR627G0990 Trochodendron aralioides HOM05D004141 ORTHO05D005416 4.4e-37 158.3 151 55.6
Ah.16g104680 Amaranthus hybridus HOM05D004141 ORTHO05D005416 9.7e-37 157.1 144 57.6
CANSAT78G2476 Cannabis sativa HOM05D004141 ORTHO05D005416 9.7e-37 157.1 155 53.5
Gohir.A01G053700 Gossypium hirsutum HOM05D004141 ORTHO05D005416 1.3e-36 156.8 156 52.6
Lj6g0002556 Lotus japonicus HOM05D004141 ORTHO05D005416 1.3e-36 156.8 154 54.5
Manes.03G100400 Manihot esculenta HOM05D004141 ORTHO05D005416 1.3e-36 156.8 155 54.2
Cfa017272 Carpinus fangiana HOM05D004141 ORTHO05D005416 2.2e-36 156.0 155 53.5
Phvul.005G081600 Phaseolus vulgaris HOM05D004141 ORTHO05D005416 2.2e-36 156.0 154 52.6
CSS0023821 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 2.8e-36 155.6 155 52.3
HanXRQChr15g0495231 Helianthus annuus HOM05D004141 ORTHO05D005416 2.8e-36 155.6 143 58.0
TAR629G0569 Trochodendron aralioides HOM05D004141 ORTHO05D005416 2.8e-36 155.6 155 54.2
Actinidia18802 Actinidia chinensis HOM05D004141 ORTHO05D005416 3.7e-36 155.2 155 54.2
ECA240G0250 Erigeron canadensis HOM05D004141 ORTHO05D005416 3.7e-36 155.2 143 58.0
Glyma.12G230400 Glycine max HOM05D004141 ORTHO05D005416 4.8e-36 154.8 154 52.6
Sed0020321 Sechium edule HOM05D004141 ORTHO05D005416 6.3e-36 154.5 156 52.6
Sc03g0010560 Simmondsia chinensis HOM05D004141 ORTHO05D005416 6.3e-36 154.5 151 54.3
GSVIVG01014186001 Vitis vinifera HOM05D004141 ORTHO05D005416 6.3e-36 154.5 143 55.9
Ca_10927_v3 Cicer arietinum L. HOM05D004141 ORTHO05D005416 8.2e-36 154.1 154 53.2
Nn7g36869 Nelumbo nucifera HOM05D004141 ORTHO05D005416 8.2e-36 154.1 155 52.9
VMungo1080G0359 Vigna mungo HOM05D004141 ORTHO05D005416 8.2e-36 154.1 154 51.9
Dinv15000 Davidia involucrata HOM05D004141 ORTHO05D005416 1.1e-35 153.7 155 53.5
ECA232G4285 Erigeron canadensis HOM05D004141 ORTHO05D005416 1.1e-35 153.7 143 57.3
Lj3g0016162 Lotus japonicus HOM05D004141 ORTHO05D005416 1.1e-35 153.7 154 52.6
CsaV3_4G008070 Cucumis sativus L. HOM05D004141 ORTHO05D005416 1.4e-35 153.3 155 52.9
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 1.4e-35 153.3 154 54.5
Psat6g208960 Pisum sativum HOM05D004141 ORTHO05D005416 1.4e-35 153.3 154 55.2
Gohir.D01G042710 Gossypium hirsutum HOM05D004141 ORTHO05D005416 2.4e-35 152.5 156 51.9
Gorai.002G054000 Gossypium raimondii HOM05D004141 ORTHO05D005416 2.4e-35 152.5 156 51.9
CsaV3_7G010060 Cucumis sativus L. HOM05D004141 ORTHO05D005416 4.1e-35 151.8 155 52.3
Aqoxy1G02012 Aquilegia oxysepala HOM05D004141 ORTHO05D005416 7.0e-35 151.0 153 54.2
Eucgr.F01245 Eucalyptus grandis HOM05D004141 ORTHO05D005416 9.1e-35 150.6 154 50.6
AUR62019583 Chenopodium quinoa HOM05D004141 ORTHO05D005416 1.6e-34 149.8 146 54.1
Migut.H02002 Erythranthe guttata HOM05D004141 ORTHO05D005416 1.6e-34 149.8 156 50.0
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 2.0e-34 149.4 144 53.5
EL10Ac4g08353 Beta vulgaris HOM05D004141 ORTHO05D005416 2.0e-34 149.4 146 56.2
FvH4_3g18220 Fragaria vesca HOM05D004141 ORTHO05D005416 2.0e-34 149.4 151 52.3
Lalb_Chr25g0285811 Lupinus albus HOM05D004141 ORTHO05D005416 2.0e-34 149.4 153 54.2
Zm00001eb072460 Zea mays HOM05D004141 ORTHO05D005416 2.0e-34 149.4 150 54.0
arahy.Tifrunner.gnm1.ann1.2ZZ8MX Arachis hypogaea HOM05D004141 ORTHO05D005416 3.5e-34 148.7 144 53.5
arahy.Tifrunner.gnm1.ann1.K2RFPE Arachis hypogaea HOM05D004141 ORTHO05D005416 3.5e-34 148.7 144 53.5
HanXRQChr04g0118321 Helianthus annuus HOM05D004141 ORTHO05D005416 4.5e-34 148.3 143 54.5
Solyc06g082490.4 Solanum lycopersicum HOM05D004141 ORTHO05D005416 4.5e-34 148.3 155 52.3
Sopen06g033870 Solanum pennellii HOM05D004141 ORTHO05D005416 4.5e-34 148.3 155 52.3
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 7.7e-34 147.5 154 52.6
Actinidia35211 Actinidia chinensis HOM05D004141 ORTHO05D005416 1.0e-33 147.1 154 51.3
PGR004G1319 Punica granatum HOM05D004141 ORTHO05D005416 1.0e-33 147.1 155 52.3
PGR117G0003 Punica granatum HOM05D004141 ORTHO05D005416 1.0e-33 147.1 155 52.3
Hund09287 Selenicereus undatus HOM05D004141 ORTHO05D005416 1.0e-33 147.1 125 60.8
PSO017G5924 Papaver somniferum HOM05D004141 ORTHO05D005416 1.3e-33 146.7 156 52.6
Prupe.5G052700 Prunus persica HOM05D004141 ORTHO05D005416 1.3e-33 146.7 156 51.9
AUR62037553 Chenopodium quinoa HOM05D004141 ORTHO05D005416 2.2e-33 146.0 146 53.4
SalBow7G1122 Salvia bowleyana HOM05D004141 ORTHO05D005416 2.2e-33 146.0 155 51.0
SGA_v2.0_scaffold130G34289 Striga asiatica HOM05D004141 ORTHO05D005416 2.2e-33 146.0 156 50.6
DCAR_030174 Daucus carota HOM05D004141 ORTHO05D005416 2.9e-33 145.6 155 49.7
Prupe.4G241400 Prunus persica HOM05D004141 ORTHO05D005416 2.9e-33 145.6 156 53.2
PGSC0003DMG400030465 Solanum tuberosum HOM05D004141 ORTHO05D005416 3.8e-33 145.2 155 51.6
Sabra11G0096600 Salix brachista HOM05D004141 ORTHO05D005416 5.0e-33 144.8 185 44.9
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 6.5e-33 144.4 155 49.7
vmacro09491 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 8.5e-33 144.1 143 53.8
HPP92_017867 Vanilla planifolia HOM05D004141 ORTHO05D005416 8.5e-33 144.1 149 54.4
Cc05_g11010 Coffea canephora HOM05D004141 ORTHO05D005416 1.5e-32 143.3 144 55.6
MELO3C016129.2 Cucumis melo HOM05D004141 ORTHO05D005416 1.5e-32 143.3 169 48.5
vmacro11945 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 1.5e-32 143.3 162 47.5
RcHm_v2.0_Chr5g0030771 Rosa chinensis HOM05D004141 ORTHO05D005416 1.9e-32 142.9 156 50.0
PSO170G2286 Papaver somniferum HOM05D004141 ORTHO05D005416 2.5e-32 142.5 156 50.0
MSTRG.11343 Avicennia marina HOM05D004141 ORTHO05D005416 3.2e-32 142.1 156 50.0
Peaxi162Scf00390g00331 Petunia axillaris HOM05D004141 ORTHO05D005416 3.2e-32 142.1 141 53.9
FAN16G3678 Fragaria x ananassa HOM05D004141 ORTHO05D005416 4.2e-32 141.7 160 49.4
MD11G1264500 Malus domestica HOM05D004141 ORTHO05D005416 4.2e-32 141.7 156 50.6
Oeu061361.2 Olea europaea HOM05D004141 ORTHO05D005416 4.2e-32 141.7 155 49.7
FAN25G0103 Fragaria x ananassa HOM05D004141 ORTHO05D005416 7.2e-32 141.0 122 59.8
FAN11G2786 Fragaria x ananassa HOM05D004141 ORTHO05D005416 2.1e-31 139.4 170 47.1
FAN21G2932 Fragaria x ananassa HOM05D004141 ORTHO05D005416 2.7e-31 139.0 171 46.8
Oeu031026.1 Olea europaea HOM05D004141 ORTHO05D005416 2.7e-31 139.0 143 51.0
Lsat_1_v5_gn_7_102521 Lactuca sativa HOM05D004141 ORTHO05D005416 3.6e-31 138.7 133 54.9
Rhsim02G0051200 Rhododendron simsii HOM05D004141 ORTHO05D005416 3.6e-31 138.7 165 46.1
Glyma.13G269200 Glycine max HOM05D004141 ORTHO05D005416 4.7e-31 138.3 178 44.4
ATR0807G029 Amborella trichopoda HOM05D004141 ORTHO05D005416 8.0e-31 137.5 155 49.7
Lj1C587G1 Lonicera japonica HOM05D004141 ORTHO05D005416 4.0e-30 135.2 137 52.6
DCAR_013161 Daucus carota HOM05D004141 ORTHO05D005416 6.7e-30 134.4 156 48.7
Nitab4.5_0000383g0110 Nicotiana tabacum HOM05D004141 ORTHO05D005416 8.8e-30 134.0 141 49.6
Sed0017698 Sechium edule HOM05D004141 ORTHO05D005416 8.8e-30 134.0 188 43.1
Peaxi162Scf00111g01467 Petunia axillaris HOM05D004141 ORTHO05D005416 1.2e-29 133.7 155 46.5
Potri.001G393000 Populus trichocarpa HOM05D004141 ORTHO05D005416 1.2e-29 133.7 149 50.3
Rhsim04G0026700 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.2e-29 133.7 189 45.0
Haze_09318 Corylus avellana HOM05D004141 ORTHO05D005416 2.6e-29 132.5 180 44.4
Ciclev10022599m.g Citrus clementina HOM05D004141 ORTHO05D005416 3.3e-29 132.1 121 58.7
SEGI_24046 Sequoiadendron giganteum HOM05D004141 ORTHO05D005416 1.3e-28 130.2 159 46.5
unitig_72.g29740 Utricularia gibba HOM05D004141 ORTHO05D005416 2.8e-28 129.0 156 46.2
unitig_746.g26536 Utricularia gibba HOM05D004141 ORTHO05D005416 2.8e-28 129.0 156 46.2
arahy.Tifrunner.gnm1.ann1.DJ268J Arachis hypogaea HOM05D004141 ORTHO05D005416 4.1e-27 125.2 196 39.3
ClCG07G010270 Citrullus lanatus HOM05D004141 ORTHO05D005416 9.1e-27 124.0 137 51.1
SHI08479 Sapria himalayana HOM05D004141 ORTHO05D000023 2.1e-23 112.8 153 47.1
AagrBONN_evm.TU.Sc2ySwM_117.897 Anthoceros agrestis HOM05D004141 ORTHO05D005416 4.7e-23 111.7 169 39.1
Pp3c12_4340 Physcomitrium patens HOM05D004141 ORTHO05D005416 1.4e-22 110.2 165 40.0
BcaC01g01525 Brassica carinata HOM05D004141 ORTHO05D005416 3.0e-22 109.0 63 84.1
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 1.5e-21 106.7 158 37.3
Mapoly0001s0113 Marchantia polymorpha HOM05D004141 ORTHO05D005416 2.0e-21 106.3 165 38.8
Thhalv10019736m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 1.4e-19 100.1 56 85.7
Dinv18368 Davidia involucrata HOM05D004141 ORTHO05D005416 4.5e-18 95.1 155 38.7
CARHR072350 Cardamine hirsuta HOM05D004141 ORTHO05D005416 5.9e-18 94.7 50 88.0
C03p92790 Brassica napus HOM05D004141 ORTHO05D005416 1.0e-17 94.0 56 80.4
CAN.G4738.1 Capsicum annuum HOM05D004141 ORTHO05D005416 9.5e-16 87.4 59 69.5
MD00G1077900 Malus domestica HOM05D004141 ORTHO05D005416 1.2e-15 87.0 71 63.4
CSS0043357 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 2.1e-15 86.3 117 44.4
Rhsim06G0208700 Rhododendron simsii HOM05D004141 ORTHO05D005416 8.0e-15 84.3 76 56.6
Lalb_Chr01g0016531 Lupinus albus HOM05D004141 ORTHO05D005416 1.0e-14 84.0 54 72.2
BcaC01g01527 Brassica carinata HOM05D004141 ORTHO05D009181 4.0e-14 82.0 59 71.2
CSS0028209 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 4.0e-14 82.0 117 42.7
MCO01G083 Micromonas commoda HOM05D004141 ORTHO05D005416 1.2e-13 80.5 166 34.3
TPR.G5502 Trifolium pratense HOM05D004141 ORTHO05D005416 1.5e-13 80.1 54 68.5
Lalb_Chr01g0016541 Lupinus albus HOM05D004141 ORTHO05D048486 4.4e-13 78.6 53 66.0
Nitab4.5_0002851g0030 Nicotiana tabacum HOM05D004141 ORTHO05D005416 5.7e-13 78.2 71 50.7
PRCOL_00006028 Prasinoderma coloniale HOM05D004141 ORTHO05D005416 6.3e-12 74.7 169 32.0
CAN.G874.81 Capsicum annuum HOM05D004141 ORTHO05D005416 1.4e-11 73.6 54 63.0
Rhsim02G0229600 Rhododendron simsii HOM05D004141 ORTHO05D005416 2.4e-11 72.8 54 57.4
MD03G1178900 Malus domestica HOM05D004141 ORTHO05D005416 1.5e-08 63.5 62 56.5
Cre02.g095147 Chlamydomonas reinhardtii HOM05D004141 ORTHO05D005416 4.3e-08 62.0 185 28.1
Haze_26741 Corylus avellana HOM05D004141 ORTHO05D005416 5.6e-08 61.6 160 30.0
Ciclev10022380m.g Citrus clementina HOM05D004141 ORTHO05D005416 3.6e-07 58.9 122 36.1
CBR_g988 Chara braunii HOM05D004141 ORTHO05D005416 4.7e-07 58.5 65 43.1
SHI22488 Sapria himalayana HOM05D004141 ORTHO05D005416 4.0e-06 55.5 43 60.5


User provided reference genes

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