Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 1.1e-293 1012.7 550 100.0
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 3.9e-142 509.2 291 93.8
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 3.9e-142 509.2 291 93.8
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 1.1e-141 507.7 291 93.5
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 1.1e-141 507.7 291 93.5
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 4.3e-141 505.8 291 93.5
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 1.3e-140 504.2 291 92.4
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 3.1e-139 499.6 291 91.4
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 9.0e-139 498.0 291 92.1
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 1.3e-137 494.2 291 90.0
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 1.9e-136 490.3 291 89.7
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 1.2e-135 487.6 288 89.6
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 2.1e-135 486.9 291 89.7
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 2.7e-135 486.5 291 89.3
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 4.6e-135 485.7 291 89.3
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 1.3e-134 484.2 291 89.0
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 2.5e-133 479.9 291 89.0
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 7.7e-122 441.8 291 82.1
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 1.0e-113 414.8 294 77.2
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 1.8e-107 394.0 280 77.9
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 7.5e-93 345.5 288 61.8
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 3.1e-91 340.1 289 66.8
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 2.7e-90 337.0 279 60.6
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 3.5e-90 336.7 279 59.5
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 3.5e-90 336.7 280 61.1
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 5.9e-90 335.9 279 60.6
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 5.9e-90 335.9 278 62.2
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 3.8e-89 333.2 278 60.1
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 6.5e-89 332.4 279 60.6
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 6.5e-89 332.4 278 59.7
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 1.1e-88 331.6 282 59.2
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 1.5e-88 331.3 279 60.2
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 1.5e-88 331.3 280 60.4
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 1.9e-88 330.9 299 57.9
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 3.2e-88 330.1 288 57.6
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 3.2e-88 330.1 278 59.7
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 4.2e-88 329.7 276 60.1
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 4.2e-88 329.7 277 60.3
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 7.2e-88 328.9 278 65.5
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 7.2e-88 328.9 309 57.6
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 9.4e-88 328.6 299 57.5
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 9.4e-88 328.6 277 59.6
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 1.2e-87 328.2 289 58.8
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 1.6e-87 327.8 278 59.0
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 1.6e-87 327.8 284 58.1
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 2.1e-87 327.4 281 59.8
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 2.1e-87 327.4 289 58.5
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 2.7e-87 327.0 278 59.0
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 3.6e-87 326.6 278 64.0
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 3.6e-87 326.6 276 60.5
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 4.7e-87 326.2 281 58.0
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 1.0e-86 325.1 299 56.2
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 1.8e-86 324.3 282 58.2
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 1.8e-86 324.3 277 58.8
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 2.3e-86 323.9 282 58.5
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 5.2e-86 322.8 283 58.3
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 6.8e-86 322.4 278 65.5
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 6.8e-86 322.4 283 58.3
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 1.2e-85 321.6 280 58.6
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 1.2e-85 321.6 303 57.1
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 2.6e-85 320.5 280 58.9
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 2.6e-85 320.5 283 59.4
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 2.6e-85 320.5 276 57.6
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 3.4e-85 320.1 283 58.0
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 4.4e-85 319.7 279 58.1
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 4.4e-85 319.7 278 57.2
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 7.5e-85 318.9 282 57.8
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 1.7e-84 317.8 286 55.2
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 1.7e-84 317.8 285 56.1
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 1.7e-84 317.8 275 58.9
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 1.7e-84 317.8 288 55.9
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 2.8e-84 317.0 285 56.1
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 3.7e-84 316.6 283 57.6
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 6.3e-84 315.8 277 58.5
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 1.1e-83 315.1 279 56.6
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 1.4e-83 314.7 268 59.7
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 2.4e-83 313.9 277 55.6
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 3.1e-83 313.5 279 55.6
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 5.4e-83 312.8 276 57.2
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 5.4e-83 312.8 282 56.0
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 7.0e-83 312.4 281 54.4
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 1.2e-82 311.6 276 58.0
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.0e-82 310.8 289 56.4
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 2.7e-82 310.5 277 58.8
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 3.5e-82 310.1 288 54.9
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 3.5e-82 310.1 288 54.9
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 3.5e-82 310.1 276 55.4
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 3.5e-82 310.1 278 56.5
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 4.5e-82 309.7 284 54.6
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 1.3e-81 308.1 283 54.8
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 3.8e-81 306.6 276 58.3
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 1.1e-80 305.1 300 53.0
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 2.5e-80 303.9 281 54.1
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 3.3e-80 303.5 291 53.6
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 9.5e-80 302.0 276 62.0
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 2.1e-79 300.8 278 55.0
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 8.0e-79 298.9 301 52.2
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.5e-77 294.7 280 55.4
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 1.5e-77 294.7 277 55.6
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 2.0e-77 294.3 298 52.7
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 5.7e-77 292.7 270 54.1
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 9.8e-77 292.0 277 53.8
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 1.7e-76 291.2 310 51.9
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 2.8e-76 290.4 300 51.0
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 1.1e-75 288.5 239 62.3
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 5.4e-75 286.2 269 62.8
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 7.8e-74 282.3 290 51.7
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 2.3e-73 280.8 239 61.1
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 5.6e-72 276.2 234 59.8
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 1.6e-71 274.6 298 50.3
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 2.8e-71 273.9 248 58.5
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 4.4e-69 266.5 247 54.7
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 3.2e-67 260.4 284 51.4
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 9.5e-64 248.8 217 60.8
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 2.8e-63 247.3 240 53.3
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 4.0e-62 243.4 239 52.3
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 4.1e-59 233.4 310 43.2
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 4.1e-59 233.4 282 45.4
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 7.8e-58 229.2 278 43.2
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 6.6e-57 226.1 279 43.0
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 4.3e-56 223.4 216 56.0
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.2e-52 211.1 191 56.0
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 5.8e-45 186.4 197 51.3
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 1.9e-43 181.4 137 65.0
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 7.1e-43 179.5 157 56.7
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 7.6e-37 159.5 284 36.6
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 9.9e-37 159.1 109 63.3
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 1.1e-30 139.0 195 46.7
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 9.6e-24 115.9 111 56.8
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 1.1e-22 112.5 105 52.4
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 4.1e-06 57.4 282 25.2


User provided reference genes

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