Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 4.7e-48 194.1 93 100.0
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 1.4e-15 86.3 39 97.4
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 1.4e-15 86.3 39 97.4
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 1.4e-15 86.3 39 97.4
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 1.4e-15 86.3 39 97.4
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 5.2e-15 84.3 39 92.3
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 8.9e-15 83.6 56 71.4
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 8.9e-15 83.6 56 71.4
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.2e-14 83.2 39 92.3
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.2e-14 83.2 39 92.3
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 2.0e-14 82.4 39 92.3
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.6e-14 82.0 39 92.3
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 4.4e-14 81.3 39 89.7
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 4.4e-14 81.3 39 89.7
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 5.8e-14 80.9 39 89.7
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 7.6e-14 80.5 44 79.5
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 9.9e-14 80.1 39 87.2
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 9.9e-14 80.1 39 87.2
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 9.9e-14 80.1 44 77.3
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 1.3e-13 79.7 79 49.4
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 1.7e-13 79.3 39 87.2
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 1.7e-13 79.3 39 87.2
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 1.7e-13 79.3 44 77.3
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 1.7e-13 79.3 44 77.3
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 1.7e-13 79.3 44 77.3
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 2.2e-13 79.0 39 87.2
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 2.9e-13 78.6 44 77.3
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 2.9e-13 78.6 53 66.0
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 2.9e-13 78.6 44 77.3
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 3.8e-13 78.2 39 84.6
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 3.8e-13 78.2 39 84.6
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 3.8e-13 78.2 39 84.6
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 3.8e-13 78.2 44 77.3
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 4.9e-13 77.8 44 77.3
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 6.4e-13 77.4 39 84.6
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 6.4e-13 77.4 44 75.0
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 8.4e-13 77.0 39 84.6
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 2.4e-12 75.5 44 72.7
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 3.2e-12 75.1 39 79.5
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 4.2e-12 74.7 44 72.7
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 5.4e-12 74.3 44 72.7
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 7.1e-12 73.9 44 72.7
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 7.1e-12 73.9 44 72.7
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 7.1e-12 73.9 44 72.7
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 1.2e-11 73.2 44 72.7
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 1.6e-11 72.8 39 76.9
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 1.6e-11 72.8 44 72.7
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 3.5e-11 71.6 80 46.2
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 3.5e-11 71.6 39 79.5
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 3.5e-11 71.6 44 68.2
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 7.8e-11 70.5 39 74.4
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 7.8e-11 70.5 44 65.9
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 1.0e-10 70.1 44 68.2
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 1.3e-10 69.7 39 76.9
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 1.3e-10 69.7 44 68.2
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 1.3e-10 69.7 41 70.7
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 1.3e-10 69.7 39 74.4
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 1.7e-10 69.3 49 61.2
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.7e-10 69.3 39 71.8
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 1.7e-10 69.3 39 71.8
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 1.7e-10 69.3 39 71.8
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 2.3e-10 68.9 44 68.2
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 2.3e-10 68.9 44 65.9
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 2.3e-10 68.9 44 68.2
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 3.0e-10 68.6 30 96.7
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 3.0e-10 68.6 82 45.1
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 3.9e-10 68.2 45 62.2
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 3.9e-10 68.2 44 65.9
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 3.9e-10 68.2 44 68.2
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.9e-10 68.2 44 68.2
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.9e-10 68.2 44 68.2
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.9e-10 68.2 44 68.2
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.9e-10 68.2 44 68.2
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.9e-10 68.2 44 68.2
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.9e-10 68.2 44 68.2
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 5.1e-10 67.8 44 63.6
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 5.1e-10 67.8 44 65.9
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 5.1e-10 67.8 44 65.9
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 5.1e-10 67.8 39 74.4
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 5.1e-10 67.8 40 70.0
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 5.1e-10 67.8 39 69.2
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 5.1e-10 67.8 39 71.8
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 6.6e-10 67.4 44 63.6
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 6.6e-10 67.4 39 71.8
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 6.6e-10 67.4 39 71.8
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 8.7e-10 67.0 44 65.9
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 8.7e-10 67.0 44 65.9
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 8.7e-10 67.0 39 71.8
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.1e-09 66.6 39 71.8
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 1.1e-09 66.6 39 69.2
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 1.5e-09 66.2 39 71.8
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 1.9e-09 65.9 44 61.4
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 1.9e-09 65.9 39 66.7
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 1.9e-09 65.9 39 71.8
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 1.9e-09 65.9 39 69.2
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 1.9e-09 65.9 44 63.6
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 2.5e-09 65.5 39 66.7
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 2.5e-09 65.5 44 61.4
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 3.3e-09 65.1 44 63.6
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 3.3e-09 65.1 39 69.2
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 4.3e-09 64.7 39 69.2
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 4.3e-09 64.7 44 61.4
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 4.3e-09 64.7 39 61.5
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 4.3e-09 64.7 44 61.4
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 4.3e-09 64.7 44 61.4
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 4.3e-09 64.7 44 61.4
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 4.3e-09 64.7 44 63.6
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 5.6e-09 64.3 39 66.7
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 7.3e-09 63.9 47 61.7
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 7.3e-09 63.9 44 61.4
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 7.3e-09 63.9 48 56.2
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 7.3e-09 63.9 48 56.2
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 9.6e-09 63.5 56 57.1
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 1.3e-08 63.2 44 59.1
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.3e-08 63.2 53 50.9
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 1.3e-08 63.2 44 63.6
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 1.6e-08 62.8 52 53.8
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.1e-08 62.4 35 71.4
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.1e-08 62.4 35 71.4
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 2.1e-08 62.4 39 59.0
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 2.8e-08 62.0 44 56.8
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 2.8e-08 62.0 39 64.1
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 2.8e-08 62.0 39 61.5
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 2.8e-08 62.0 39 61.5
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 2.8e-08 62.0 44 59.1
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 3.6e-08 61.6 44 56.8
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 3.6e-08 61.6 44 59.1
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 3.6e-08 61.6 45 55.6
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 3.6e-08 61.6 44 61.4
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 4.8e-08 61.2 39 61.5
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 4.8e-08 61.2 44 61.4
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 4.8e-08 61.2 44 61.4
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 8.1e-08 60.5 39 59.0
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 8.1e-08 60.5 39 59.0
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 8.1e-08 60.5 44 59.1
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 8.1e-08 60.5 39 66.7
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.4e-07 59.7 39 59.0
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 1.4e-07 59.7 39 59.0
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 1.4e-07 59.7 39 59.0
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.4e-07 59.7 44 56.8
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.4e-07 59.7 39 59.0
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 1.8e-07 59.3 40 60.0
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 2.4e-07 58.9 39 59.0
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.1e-07 58.5 39 56.4
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 4.0e-07 58.2 77 40.3
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 4.0e-07 58.2 39 56.4
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 4.0e-07 58.2 39 56.4
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 4.0e-07 58.2 39 56.4
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 4.0e-07 58.2 39 56.4
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 4.0e-07 58.2 39 56.4
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 4.0e-07 58.2 47 53.2
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 6.9e-07 57.4 29 79.3
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.2e-06 56.6 39 61.5
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 1.2e-06 56.6 40 52.5
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.2e-06 56.6 40 60.0
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.5e-06 56.2 38 55.3
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 9.9e-06 53.5 39 56.4
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 9.9e-06 53.5 29 72.4
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 9.9e-06 53.5 29 72.4


User provided reference genes

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