Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g25101 Brassica carinata HOM05D003880 ORTHO05D019999 4.0e-75 284.6 142 100.0
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 5.7e-53 211.1 128 82.8
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 4.1e-51 204.9 127 81.9
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 6.9e-51 204.1 129 81.4
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 6.9e-51 204.1 129 81.4
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 6.9e-51 204.1 129 81.4
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 9.1e-51 203.8 129 81.4
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 9.1e-51 203.8 129 81.4
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 9.1e-51 203.8 128 80.5
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 2.0e-50 202.6 128 80.5
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 3.4e-50 201.8 128 79.7
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 3.4e-50 201.8 128 79.7
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 3.4e-50 201.8 128 80.5
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 5.0e-49 198.0 127 78.0
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 5.0e-49 198.0 128 78.9
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 1.4e-48 196.4 129 77.5
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 8.8e-46 187.2 128 75.8
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 1.1e-45 186.8 128 75.8
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 1.7e-44 183.0 128 74.2
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 7.2e-40 167.5 128 68.8
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 1.6e-39 166.4 127 69.3
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 1.1e-35 153.7 122 64.8
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 2.0e-34 149.4 124 64.5
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 3.5e-34 148.7 134 56.7
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 7.7e-34 147.5 129 60.5
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 1.0e-33 147.1 127 60.6
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 2.9e-33 145.6 125 62.4
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 3.8e-33 145.2 125 60.0
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 1.1e-32 143.7 128 58.6
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 1.5e-32 143.3 128 58.6
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 1.9e-32 142.9 127 57.5
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 1.9e-32 142.9 124 59.7
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 2.5e-32 142.5 127 59.1
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 3.2e-32 142.1 128 57.0
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 3.2e-32 142.1 129 60.5
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 5.5e-32 141.4 121 62.0
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 7.2e-32 141.0 119 61.3
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 9.4e-32 140.6 130 58.5
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 1.2e-31 140.2 127 59.1
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 1.6e-31 139.8 128 56.2
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 1.6e-31 139.8 130 55.4
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 2.1e-31 139.4 128 56.2
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 2.7e-31 139.0 127 59.1
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 2.7e-31 139.0 129 57.4
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 2.7e-31 139.0 128 59.4
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 4.7e-31 138.3 128 57.8
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 6.1e-31 137.9 130 56.9
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 8.0e-31 137.5 126 57.1
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 8.0e-31 137.5 128 57.8
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 8.0e-31 137.5 127 55.9
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 8.0e-31 137.5 131 55.7
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 1.0e-30 137.1 129 55.8
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 1.0e-30 137.1 130 58.5
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.4e-30 136.7 129 56.6
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 1.8e-30 136.3 128 55.5
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 1.8e-30 136.3 130 55.4
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 2.3e-30 136.0 127 56.7
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 3.0e-30 135.6 126 57.1
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 4.0e-30 135.2 129 55.0
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 4.0e-30 135.2 126 58.7
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 4.0e-30 135.2 128 58.6
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 5.2e-30 134.8 128 56.2
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 5.2e-30 134.8 126 57.9
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 5.2e-30 134.8 127 56.7
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 6.7e-30 134.4 130 54.6
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.2e-29 133.7 129 55.0
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 1.2e-29 133.7 139 52.5
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 1.2e-29 133.7 127 57.5
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 1.5e-29 133.3 129 54.3
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 2.0e-29 132.9 127 54.3
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 2.0e-29 132.9 127 55.9
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 2.0e-29 132.9 130 56.2
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 2.6e-29 132.5 124 56.5
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 2.6e-29 132.5 122 57.4
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 3.3e-29 132.1 130 53.8
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 3.3e-29 132.1 126 56.3
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 4.4e-29 131.7 128 56.2
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 4.4e-29 131.7 127 54.3
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 5.7e-29 131.3 128 55.5
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 5.7e-29 131.3 128 55.5
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 5.7e-29 131.3 128 55.5
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 5.7e-29 131.3 128 55.5
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 7.5e-29 131.0 123 58.5
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 7.5e-29 131.0 128 53.1
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 7.5e-29 131.0 127 55.1
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 7.5e-29 131.0 127 55.1
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 9.7e-29 130.6 70 88.6
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 9.7e-29 130.6 129 53.5
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 9.7e-29 130.6 129 52.7
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 1.7e-28 129.8 130 53.1
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 1.7e-28 129.8 125 54.4
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 1.7e-28 129.8 124 55.6
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 2.2e-28 129.4 128 55.5
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 2.2e-28 129.4 130 55.4
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 2.2e-28 129.4 128 54.7
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 2.8e-28 129.0 124 54.0
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 2.8e-28 129.0 124 57.3
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 4.8e-28 128.3 127 55.1
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 4.8e-28 128.3 128 56.2
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 6.3e-28 127.9 127 55.1
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 6.3e-28 127.9 127 55.1
BcaB07g33153 Brassica carinata HOM05D003880 ORTHO05D019999 8.2e-28 127.5 95 70.5
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 8.2e-28 127.5 128 55.5
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 1.1e-27 127.1 129 54.3
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 1.4e-27 126.7 127 53.5
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 1.4e-27 126.7 127 55.1
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 1.8e-27 126.3 125 54.4
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 4.1e-27 125.2 128 53.1
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 4.1e-27 125.2 128 53.1
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 5.3e-27 124.8 127 51.2
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 5.3e-27 124.8 127 51.2
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 5.3e-27 124.8 129 52.7
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 9.1e-27 124.0 70 84.3
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 9.1e-27 124.0 128 53.9
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 1.2e-26 123.6 125 52.8
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 1.6e-26 123.2 125 56.8
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 1.6e-26 123.2 125 52.8
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 2.7e-26 122.5 126 51.6
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 2.7e-26 122.5 124 52.4
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 3.5e-26 122.1 127 54.3
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 3.5e-26 122.1 125 52.8
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 4.5e-26 121.7 129 48.8
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 7.7e-26 120.9 111 61.3
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 7.7e-26 120.9 129 49.6
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 1.7e-25 119.8 126 51.6
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 3.8e-25 118.6 97 61.9
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 5.0e-25 118.2 128 49.2
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 5.0e-25 118.2 126 51.6
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 5.0e-25 118.2 127 48.8
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 6.5e-25 117.9 124 54.8
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 8.5e-25 117.5 108 53.7
BcaB02g09679 Brassica carinata HOM05D003880 ORTHO05D019999 1.5e-24 116.7 89 69.7
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 2.5e-24 115.9 74 75.7
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 2.5e-24 115.9 125 50.4
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 5.5e-24 114.8 120 52.5
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 7.2e-24 114.4 130 56.9
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 2.7e-23 112.5 100 55.0
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 2.3e-22 109.4 103 52.4
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 2.3e-22 109.4 58 87.9
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 2.3e-22 109.4 109 51.4
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 2.0e-21 106.3 119 47.1
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 2.0e-21 106.3 128 43.8
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 2.6e-21 105.9 58 86.2
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 5.7e-21 104.8 67 67.2
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 1.8e-19 99.8 86 57.0
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 2.4e-19 99.4 68 64.7
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 3.5e-18 95.5 58 74.1
Oeu021226.1 Olea europaea HOM05D003880 ORTHO05D019999 5.9e-18 94.7 101 52.5
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 5.0e-17 91.7 92 55.4
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 5.5e-16 88.2 123 44.7
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 1.6e-15 86.7 50 74.0
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 1.6e-15 86.7 50 74.0
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 6.1e-15 84.7 64 60.9
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 3.0e-14 82.4 50 72.0
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 1.2e-13 80.5 126 42.9
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 3.4e-13 79.0 50 72.0
Lsat_1_v5_gn_1_10160 Lactuca sativa HOM05D003880 ORTHO05D019999 4.1e-11 72.0 48 72.9
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 3.8e-09 65.5 45 66.7
COL.COLO4_03399 Corchorus olitorius HOM05D003880 ORTHO05D019999 6.8e-06 54.7 31 77.4


User provided reference genes

Program Settings