Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g25069 Brassica carinata HOM05D005652 ORTHO05D007300 1.5e-46 189.1 93 100.0
AL2G37930 Arabidopsis lyrata HOM05D005652 ORTHO05D007300 1.1e-44 183.0 90 100.0
BcaB02g07127 Brassica carinata HOM05D005652 ORTHO05D007300 1.2e-43 179.5 91 98.9
BcaC08g45458 Brassica carinata HOM05D005652 ORTHO05D007300 1.2e-43 179.5 91 98.9
A07p27870 Brassica napus HOM05D005652 ORTHO05D007300 1.2e-43 179.5 91 98.9
C06p30860 Brassica napus HOM05D005652 ORTHO05D007300 1.2e-43 179.5 91 98.9
BolC6t38248H Brassica oleracea HOM05D005652 ORTHO05D007300 1.2e-43 179.5 91 98.9
BraA07t30426Z Brassica rapa HOM05D005652 ORTHO05D007300 1.2e-43 179.5 91 98.9
CARHR071220 Cardamine hirsuta HOM05D005652 ORTHO05D007300 3.5e-43 177.9 90 97.8
BcaC03g15763 Brassica carinata HOM05D005652 ORTHO05D007300 7.8e-43 176.8 93 96.8
CSS0012578 Camellia sinensis var. sinensis HOM05D005652 ORTHO05D007300 7.8e-43 176.8 89 96.6
Aa31LG4G7830 Aethionema arabicum HOM05D005652 ORTHO05D007300 1.3e-42 176.0 90 98.9
MBI09_g06382_MAGBIO Magnolia biondii HOM05D005652 ORTHO05D007300 1.3e-42 176.0 88 97.7
Sp5g32880 Schrenkiella parvula HOM05D005652 ORTHO05D007300 1.3e-42 176.0 90 98.9
Medtr5g059210 Medicago truncatula HOM05D005652 ORTHO05D007300 1.7e-42 175.6 92 93.5
Hma1.2p1_0009F.1_g006210 Hydrangea macrophylla HOM05D005652 ORTHO05D007300 2.3e-42 175.3 89 95.5
Thhalv10019370m.g Eutrema salsugineum HOM05D005652 ORTHO05D007300 2.9e-42 174.9 90 97.8
Psat2g096080 Pisum sativum HOM05D005652 ORTHO05D007300 2.9e-42 174.9 89 95.5
AT1G77710 Arabidopsis thaliana HOM05D005652 ORTHO05D007300 3.9e-42 174.5 90 97.8
Potri.002G087200 Populus trichocarpa HOM05D005652 ORTHO05D007300 3.9e-42 174.5 90 94.4
Sabra02G0068700 Salix brachista HOM05D005652 ORTHO05D007300 3.9e-42 174.5 90 94.4
arahy.Tifrunner.gnm1.ann1.AJPJ4J Arachis hypogaea HOM05D005652 ORTHO05D007300 5.0e-42 174.1 89 95.5
HanXRQChr14g0432351 Helianthus annuus HOM05D005652 ORTHO05D007300 5.0e-42 174.1 89 97.8
Carub.0002s2459 Capsella rubella HOM05D005652 ORTHO05D007300 6.6e-42 173.7 89 98.9
TPR.G8501 Trifolium pratense HOM05D005652 ORTHO05D007300 6.6e-42 173.7 89 94.4
Nitab4.5_0000030g0080 Nicotiana tabacum HOM05D005652 ORTHO05D007300 8.6e-42 173.3 89 94.4
CANSAT54G2625 Cannabis sativa HOM05D005652 ORTHO05D007300 1.5e-41 172.6 90 94.4
ClCG03G009400 Citrullus lanatus HOM05D005652 ORTHO05D007300 1.5e-41 172.6 86 97.7
MELO3C003038.2 Cucumis melo HOM05D005652 ORTHO05D007300 1.5e-41 172.6 86 97.7
CsaV3_5G023210 Cucumis sativus L. HOM05D005652 ORTHO05D007300 1.5e-41 172.6 86 97.7
Sed0000902 Sechium edule HOM05D005652 ORTHO05D007300 1.5e-41 172.6 86 97.7
Potri.005G173800 Populus trichocarpa HOM05D005652 ORTHO05D007300 1.9e-41 172.2 90 93.3
arahy.Tifrunner.gnm1.ann1.KZ1VTZ Arachis hypogaea HOM05D005652 ORTHO05D007300 2.5e-41 171.8 89 94.4
Dinv27358 Davidia involucrata HOM05D005652 ORTHO05D007300 2.5e-41 171.8 87 95.4
Peaxi162Scf00408g00839 Petunia axillaris HOM05D005652 ORTHO05D007300 2.5e-41 171.8 87 95.4
CiPaw.05G226800 Carya illinoinensis HOM05D005652 ORTHO05D007300 3.3e-41 171.4 86 96.5
Lalb_Chr08g0241571 Lupinus albus HOM05D005652 ORTHO05D007300 3.3e-41 171.4 86 96.5
Lalb_Chr23g0270881 Lupinus albus HOM05D005652 ORTHO05D007300 3.3e-41 171.4 86 96.5
PGSC0003DMG400030853 Solanum tuberosum HOM05D005652 ORTHO05D007300 3.3e-41 171.4 87 96.6
THA.LOC104817112 Tarenaya hassleriana HOM05D005652 ORTHO05D007300 4.3e-41 171.0 89 96.6
TWI56G0667 Tripterygium wilfordii HOM05D005652 ORTHO05D007300 4.3e-41 171.0 87 95.4
Glyma.04G252400 Glycine max HOM05D005652 ORTHO05D007300 5.6e-41 170.6 85 97.6
Glyma.06G110100 Glycine max HOM05D005652 ORTHO05D007300 5.6e-41 170.6 85 97.6
Lsat_1_v5_gn_5_65281 Lactuca sativa HOM05D005652 ORTHO05D007300 5.6e-41 170.6 88 94.3
MD08G1169400 Malus domestica HOM05D005652 ORTHO05D007300 5.6e-41 170.6 85 97.6
MD15G1356000 Malus domestica HOM05D005652 ORTHO05D007300 5.6e-41 170.6 85 97.6
Manes.18G074500 Manihot esculenta HOM05D005652 ORTHO05D007300 5.6e-41 170.6 85 97.6
Oeu050889.1 Olea europaea HOM05D005652 ORTHO05D007300 5.6e-41 170.6 85 97.6
Phvul.009G121900 Phaseolus vulgaris HOM05D005652 ORTHO05D007300 5.6e-41 170.6 85 97.6
RcHm_v2.0_Chr6g0294951 Rosa chinensis HOM05D005652 ORTHO05D007300 5.6e-41 170.6 85 97.6
Solyc12g096120.2 Solanum lycopersicum HOM05D005652 ORTHO05D007300 5.6e-41 170.6 85 97.6
Sopen12g032000 Solanum pennellii HOM05D005652 ORTHO05D007300 5.6e-41 170.6 85 97.6
PGSC0003DMG400029291 Solanum tuberosum HOM05D005652 ORTHO05D007300 5.6e-41 170.6 85 97.6
TWI12G1472 Tripterygium wilfordii HOM05D005652 ORTHO05D007300 5.6e-41 170.6 85 97.6
SalBow7G3105 Salvia bowleyana HOM05D005652 ORTHO05D007300 7.3e-41 170.2 85 96.5
Hund16832 Selenicereus undatus HOM05D005652 ORTHO05D007300 7.3e-41 170.2 85 96.5
Solyc08g075780.4 Solanum lycopersicum HOM05D005652 ORTHO05D007300 7.3e-41 170.2 89 93.3
Atru.chr13.1343 Acer truncatum HOM05D005652 ORTHO05D007300 9.5e-41 169.9 89 95.5
ATR0041G005 Amborella trichopoda HOM05D005652 ORTHO05D007300 9.5e-41 169.9 85 97.6
Cc06_g19090 Coffea canephora HOM05D005652 ORTHO05D007300 9.5e-41 169.9 90 94.4
Nitab4.5_0000943g0120 Nicotiana tabacum HOM05D005652 ORTHO05D007300 9.5e-41 169.9 90 94.4
Nitab4.5_0013867g0020 Nicotiana tabacum HOM05D005652 ORTHO05D007300 9.5e-41 169.9 89 92.1
Peaxi162Scf00876g00433 Petunia axillaris HOM05D005652 ORTHO05D007300 9.5e-41 169.9 94 90.4
Ca_19025_v3 Cicer arietinum L. HOM05D005652 ORTHO05D007300 1.2e-40 169.5 87 94.3
Ca_26775_v3 Cicer arietinum L. HOM05D005652 ORTHO05D007300 1.2e-40 169.5 87 94.3
FAN20G1151 Fragaria x ananassa HOM05D005652 ORTHO05D007300 1.2e-40 169.5 85 96.5
FAN24G1202 Fragaria x ananassa HOM05D000102 ORTHO05D003793 1.2e-40 169.5 85 96.5
FAN27G1241 Fragaria x ananassa HOM05D005652 ORTHO05D007300 1.2e-40 169.5 85 96.5
Oeu050252.1 Olea europaea HOM05D005652 ORTHO05D007300 1.2e-40 169.5 85 96.5
Prupe.1G503300 Prunus persica HOM05D005652 ORTHO05D007300 1.2e-40 169.5 85 96.5
THA.LOC104813142 Tarenaya hassleriana HOM05D005652 ORTHO05D007300 1.2e-40 169.5 88 96.6
Ciclev10002945m.g Citrus clementina HOM05D005652 ORTHO05D007300 1.6e-40 169.1 85 96.5
Lj1g0016776 Lotus japonicus HOM05D005652 ORTHO05D007300 1.6e-40 169.1 85 96.5
Nn5g28127 Nelumbo nucifera HOM05D005652 ORTHO05D007300 1.6e-40 169.1 88 94.3
PGR042G1865 Punica granatum HOM05D005652 ORTHO05D007300 1.6e-40 169.1 85 96.5
Hund27043 Selenicereus undatus HOM05D005652 ORTHO05D007300 1.6e-40 169.1 85 95.3
TAR376G0464 Trochodendron aralioides HOM05D005652 ORTHO05D007300 2.1e-40 168.7 88 93.2
unitig_37.g12684 Utricularia gibba HOM05D005652 ORTHO05D007300 2.1e-40 168.7 85 96.5
Ah.05g172270 Amaranthus hybridus HOM05D005652 ORTHO05D007300 2.8e-40 168.3 87 93.1
MSTRG.22423 Avicennia marina HOM05D005652 ORTHO05D007300 2.8e-40 168.3 91 92.3
Duzib041G0199 Durio zibethinus HOM05D005652 ORTHO05D007300 2.8e-40 168.3 84 97.6
Duzib093G1773 Durio zibethinus HOM05D005652 ORTHO05D007300 2.8e-40 168.3 84 97.6
Migut.N03303 Erythranthe guttata HOM05D005652 ORTHO05D007300 2.8e-40 168.3 85 96.5
FvH4_2g26390 Fragaria vesca HOM05D005652 ORTHO05D007300 2.8e-40 168.3 85 95.3
Glyma.14G163800 Glycine max HOM05D005652 ORTHO05D007300 2.8e-40 168.3 84 97.6
Gohir.A06G041900 Gossypium hirsutum HOM05D005652 ORTHO05D007300 2.8e-40 168.3 84 97.6
Gohir.D06G042900 Gossypium hirsutum HOM05D005652 ORTHO05D007300 2.8e-40 168.3 84 97.6
Gorai.005G091100 Gossypium raimondii HOM05D005652 ORTHO05D007300 2.8e-40 168.3 84 97.6
Gorai.010G048100 Gossypium raimondii HOM05D005652 ORTHO05D007300 2.8e-40 168.3 84 97.6
Nitab4.5_0014082g0020 Nicotiana tabacum HOM05D005652 ORTHO05D007300 2.8e-40 168.3 94 90.4
Thecc.08G119900 Theobroma cacao HOM05D005652 ORTHO05D007300 2.8e-40 168.3 84 97.6
GSVIVG01008919001 Vitis vinifera HOM05D005652 ORTHO05D007300 2.8e-40 168.3 84 97.6
PSO528G0083 Papaver somniferum HOM05D005652 ORTHO05D007300 3.6e-40 167.9 89 93.3
Aqoxy6G01736 Aquilegia oxysepala HOM05D005652 ORTHO05D007300 6.2e-40 167.2 84 96.4
PSO170G5049 Papaver somniferum HOM05D005652 ORTHO05D007300 6.2e-40 167.2 89 93.3
Sc23g0000830 Simmondsia chinensis HOM05D005652 ORTHO05D007300 6.2e-40 167.2 84 96.4
CAN.G1483.5 Capsicum annuum HOM05D005652 ORTHO05D007300 8.0e-40 166.8 84 96.4
CDE06G1598 Ceratophyllum demersum HOM05D005652 ORTHO05D007300 8.0e-40 166.8 83 97.6
CDE08G1473 Ceratophyllum demersum HOM05D005652 ORTHO05D007300 8.0e-40 166.8 83 97.6
Pp3c6_16720 Physcomitrium patens HOM05D005652 ORTHO05D007300 8.0e-40 166.8 87 93.1
ECA238G1260 Erigeron canadensis HOM05D005652 ORTHO05D007300 1.0e-39 166.4 87 95.4
Gohir.A02G074200 Gossypium hirsutum HOM05D005652 ORTHO05D007300 1.0e-39 166.4 84 96.4
EL10Ac1g00017 Beta vulgaris HOM05D005652 ORTHO05D007300 1.8e-39 165.6 87 92.0
Gohir.D02G081400 Gossypium hirsutum HOM05D005652 ORTHO05D007300 3.1e-39 164.9 84 96.4
Zm00001eb140360 Zea mays HOM05D005652 ORTHO05D007300 3.1e-39 164.9 84 95.2
Haze_00495 Corylus avellana HOM05D000102 ORTHO05D003793 4.0e-39 164.5 96 86.5
MSTRG.1473 Avicennia marina HOM05D005652 ORTHO05D007300 6.8e-39 163.7 82 97.6
Eucgr.F03755 Eucalyptus grandis HOM05D005652 ORTHO05D007300 6.8e-39 163.7 82 97.6
AagrBONN_evm.TU.Sc2ySwM_362.1619 Anthoceros agrestis HOM05D005652 ORTHO05D007300 8.9e-39 163.3 88 88.6
Os01g0962400 Oryza sativa ssp. japonica HOM05D005652 ORTHO05D007300 8.9e-39 163.3 83 95.2
SGA_v2.0_scaffold24G10489 Striga asiatica HOM05D005652 ORTHO05D007300 2.0e-38 162.2 81 97.5
Mapoly0081s0039 Marchantia polymorpha HOM05D005652 ORTHO05D007300 2.6e-38 161.8 83 94.0
Migut.C01167 Erythranthe guttata HOM05D005652 ORTHO05D007300 7.5e-38 160.2 82 95.1
CBR_g44443 Chara braunii HOM05D005652 ORTHO05D007300 1.3e-37 159.5 82 93.9
SMO147G0269 Selaginella moellendorffii HOM05D005652 ORTHO05D007300 1.9e-36 155.6 83 90.4
FAN15G0151 Fragaria x ananassa HOM05D000102 ORTHO05D003793 9.2e-36 153.3 109 74.3
Actinidia02604 Actinidia chinensis HOM05D005652 ORTHO05D007300 6.0e-35 150.6 102 77.5
Haze_27250 Corylus avellana HOM05D005652 ORTHO05D007300 8.9e-31 136.7 82 76.8
QL09p036189 Quercus lobata HOM05D005652 ORTHO05D007300 1.7e-29 132.5 176 47.2
PRCOL_00001930 Prasinoderma coloniale HOM05D005652 ORTHO05D007300 6.4e-29 130.6 81 82.7
Oeu026729.1 Olea europaea HOM05D005652 ORTHO05D007300 1.1e-28 129.8 65 96.9
CAN.G947.38 Capsicum annuum HOM05D005652 ORTHO05D007300 1.4e-28 129.4 66 93.9
Rhsim11G0066600 Rhododendron simsii HOM05D005652 ORTHO05D007300 1.9e-28 129.0 64 96.9
AUR62023629 Chenopodium quinoa HOM05D000102 ORTHO05D003793 5.4e-28 127.5 63 96.8
Glyma.13G082800 Glycine max HOM05D005652 ORTHO05D007300 9.2e-28 126.7 65 93.8
SalBow7G1395 Salvia bowleyana HOM05D005652 ORTHO05D007300 4.6e-27 124.4 73 86.3
HPP92_028057 Vanilla planifolia HOM05D005652 ORTHO05D007300 2.8e-24 115.2 78 78.2
BraA02t07181Z Brassica rapa HOM05D005652 ORTHO05D007300 2.0e-22 109.0 69 81.2
Cpa.g.sc36.14 Carica papaya HOM05D005652 ORTHO05D007300 1.7e-21 105.9 66 87.9
AUR62004713 Chenopodium quinoa HOM05D005652 ORTHO05D007300 2.9e-21 105.1 53 96.2
COL.COLO4_38344 Corchorus olitorius HOM05D005652 ORTHO05D007300 4.9e-21 104.4 56 96.4
BolC2t09520H Brassica oleracea HOM05D005652 ORTHO05D007300 1.4e-20 102.8 50 96.0
Oeu062544.1 Olea europaea HOM05D005652 ORTHO05D007300 1.2e-19 99.8 62 83.9
Sed0022236 Sechium edule HOM05D005652 ORTHO05D007300 2.1e-19 99.0 92 62.0
Actinidia13808 Actinidia chinensis HOM05D005652 ORTHO05D007300 1.9e-17 92.4 50 90.0
AagrBONN_evm.TU.Sc2ySwM_344.240 Anthoceros agrestis HOM05D005652 ORTHO05D007300 1.6e-11 72.8 41 85.4
TAR381G0412 Trochodendron aralioides HOM05D000102 ORTHO05D003793 1.6e-08 62.8 32 93.8
Actinidia03505 Actinidia chinensis HOM05D005652 ORTHO05D054027 3.1e-07 58.5 72 50.0
Dinv20715 Davidia involucrata HOM05D005652 ORTHO05D185765 5.3e-07 57.8 39 76.9
Actinidia34351 Actinidia chinensis HOM05D005652 ORTHO05D057191 7.6e-06 53.9 32 78.1


User provided reference genes

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