Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g25043 Brassica carinata HOM05D007332 ORTHO05D009297 1.4e-106 389.8 226 100.0
BolC6t40174H Brassica oleracea HOM05D007332 ORTHO05D009297 1.8e-85 319.7 231 73.6
BcaB03g15951 Brassica carinata HOM05D007332 ORTHO05D009297 2.4e-85 319.3 229 74.2
BcaC08g47611 Brassica carinata HOM05D007332 ORTHO05D009297 1.2e-84 317.0 228 73.7
A07p42920 Brassica napus HOM05D007332 ORTHO05D009297 1.2e-84 317.0 235 72.3
BraA07t31813Z Brassica rapa HOM05D007332 ORTHO05D009297 1.2e-84 317.0 231 73.2
C06p51540 Brassica napus HOM05D007332 ORTHO05D009297 2.2e-83 312.8 231 72.7
Sp5g32550 Schrenkiella parvula HOM05D007332 ORTHO05D009297 6.0e-81 304.7 229 76.9
BcaC03g15733 Brassica carinata HOM05D007332 ORTHO05D009297 1.5e-79 300.1 230 73.0
C02p17420 Brassica napus HOM05D007332 ORTHO05D009297 3.1e-77 292.4 224 69.6
BolC2t07856H Brassica oleracea HOM05D007332 ORTHO05D009297 3.1e-77 292.4 224 69.6
AL2G37600 Arabidopsis lyrata HOM05D007332 ORTHO05D009297 5.3e-77 291.6 234 70.1
BolC2t09481H Brassica oleracea HOM05D007332 ORTHO05D009297 5.3e-77 291.6 225 72.4
Thhalv10019445m.g Eutrema salsugineum HOM05D007332 ORTHO05D009297 2.6e-76 289.3 229 75.1
AT1G77400 Arabidopsis thaliana HOM05D007332 ORTHO05D009297 2.2e-75 286.2 234 69.7
CARHR070880 Cardamine hirsuta HOM05D007332 ORTHO05D009297 6.4e-75 284.6 238 66.4
Carub.0002s2429 Capsella rubella HOM05D007332 ORTHO05D009297 5.4e-74 281.6 238 68.1
C02p34520 Brassica napus HOM05D007332 ORTHO05D009297 5.8e-68 261.5 211 72.0
BraA02t07143Z Brassica rapa HOM05D007332 ORTHO05D009297 1.9e-66 256.5 211 72.5
A02p21250 Brassica napus HOM05D007332 ORTHO05D009297 1.1e-55 220.7 229 59.4
Aa31LG4G7420 Aethionema arabicum HOM05D007332 ORTHO05D009297 1.5e-55 220.3 233 58.8
BcaC08g47610 Brassica carinata HOM05D007332 ORTHO05D009297 3.4e-52 209.1 230 56.5
THA.LOC104813672 Tarenaya hassleriana HOM05D007332 ORTHO05D009297 1.0e-51 207.6 227 55.1
Manes.02G166600 Manihot esculenta HOM05D007332 ORTHO05D009297 1.6e-28 130.6 226 43.4
COL.COLO4_03954 Corchorus olitorius HOM05D007332 ORTHO05D009297 2.2e-27 126.7 225 43.6
Potri.002G080200 Populus trichocarpa HOM05D007332 ORTHO05D009297 9.4e-26 121.3 234 48.7
Ciclev10002610m.g Citrus clementina HOM05D007332 ORTHO05D009297 5.2e-24 115.5 227 39.6
Potri.005G181200 Populus trichocarpa HOM05D007332 ORTHO05D009297 1.5e-23 114.0 224 45.1
Sabra02G0062700 Salix brachista HOM05D007332 ORTHO05D009297 1.5e-23 114.0 231 40.7
Atru.chr13.1537 Acer truncatum HOM05D007332 ORTHO05D009297 2.0e-23 113.6 234 38.9
Gohir.A05G237300 Gossypium hirsutum HOM05D007332 ORTHO05D009297 2.0e-23 113.6 232 38.8
Gohir.D05G239400 Gossypium hirsutum HOM05D007332 ORTHO05D009297 2.6e-23 113.2 232 38.8
Gorai.009G248200 Gossypium raimondii HOM05D007332 ORTHO05D009297 5.7e-23 112.1 232 38.4
QL09p033201 Quercus lobata HOM05D007332 ORTHO05D009297 5.7e-23 112.1 233 38.6
Duzib116G0046 Durio zibethinus HOM05D007332 ORTHO05D009297 7.5e-23 111.7 221 41.6
Duzib093G1986 Durio zibethinus HOM05D007332 ORTHO05D009297 9.7e-23 111.3 221 41.6
CiPaw.15G033700 Carya illinoinensis HOM05D007332 ORTHO05D009297 1.4e-21 107.5 234 38.5
Dinv27272 Davidia involucrata HOM05D001470 ORTHO05D006430 3.5e-20 102.8 226 45.1
Solyc03g113480.1 Solanum lycopersicum HOM05D007332 ORTHO05D009297 7.7e-20 101.7 229 35.4
Nitab4.5_0000111g0100 Nicotiana tabacum HOM05D007332 ORTHO05D009297 1.7e-19 100.5 232 37.9
Cc10_g12430 Coffea canephora HOM05D007332 ORTHO05D009297 2.2e-19 100.1 239 35.1
PGSC0003DMG400024564 Solanum tuberosum HOM05D007332 ORTHO05D009297 2.9e-19 99.8 229 34.5
FAN20G0761 Fragaria x ananassa HOM05D007332 ORTHO05D009297 5.0e-19 99.0 242 36.4
Lj1g0005314 Lotus japonicus HOM05D007332 ORTHO05D009297 6.5e-19 98.6 225 34.7
Gohir.A06G046800 Gossypium hirsutum HOM05D007332 ORTHO05D009297 1.1e-18 97.8 215 38.1
TWI34G0633 Tripterygium wilfordii HOM05D007332 ORTHO05D009297 1.1e-18 97.8 231 36.8
Nitab4.5_0006720g0020 Nicotiana tabacum HOM05D007332 ORTHO05D009297 1.5e-18 97.4 234 36.3
Sopen03g032530 Solanum pennellii HOM05D007332 ORTHO05D009297 1.5e-18 97.4 234 33.8
Cfa018560 Carpinus fangiana HOM05D007332 ORTHO05D009297 1.9e-18 97.1 230 37.4
CAN.G1486.2 Capsicum annuum HOM05D007332 ORTHO05D009297 3.2e-18 96.3 227 34.8
MELO3C010504.2 Cucumis melo HOM05D007332 ORTHO05D009297 3.2e-18 96.3 226 35.0
Peaxi162Scf00310g00043 Petunia axillaris HOM05D007332 ORTHO05D009297 4.2e-18 95.9 231 35.9
FAN27G1631 Fragaria x ananassa HOM05D007332 ORTHO05D009297 5.5e-18 95.5 235 35.7
THA.LOC104800214 Tarenaya hassleriana HOM05D007332 ORTHO05D009297 5.5e-18 95.5 208 39.4
SGA_v2.0_scaffold52G18934 Striga asiatica HOM05D007332 ORTHO05D009297 9.4e-18 94.7 222 35.1
Sabra05G0137200 Salix brachista HOM05D007332 ORTHO05D009297 1.2e-17 94.4 208 43.3
FAN24G1344 Fragaria x ananassa HOM05D007332 ORTHO05D009297 1.6e-17 94.0 243 34.6
CSS0048102 Camellia sinensis var. sinensis HOM05D007332 ORTHO05D009297 2.7e-17 93.2 227 45.4
FvH4_2g27560 Fragaria vesca HOM05D007332 ORTHO05D009297 6.1e-17 92.0 242 33.9
Carub.0001s2113 Capsella rubella HOM05D011160 ORTHO05D013203 1.4e-16 90.9 219 39.7
DCAR_003566 Daucus carota HOM05D007332 ORTHO05D009297 1.4e-16 90.9 228 35.1
Eucgr.F04333 Eucalyptus grandis HOM05D007332 ORTHO05D009297 1.8e-16 90.5 244 34.8
Gorai.010G052700 Gossypium raimondii HOM05D007332 ORTHO05D009297 3.0e-16 89.7 211 35.1
PGR044G1395 Punica granatum HOM05D007332 ORTHO05D009297 3.0e-16 89.7 241 34.4
arahy.Tifrunner.gnm1.ann1.ILK6IZ Arachis hypogaea HOM05D007332 ORTHO05D009297 5.2e-16 89.0 229 34.1
ClCG11G015900 Citrullus lanatus HOM05D007332 ORTHO05D009297 5.2e-16 89.0 220 32.7
Phvul.009G128000 Phaseolus vulgaris HOM05D007332 ORTHO05D009297 1.2e-15 87.8 225 33.3
Hma1.2p1_0542F.1_g174970 Hydrangea macrophylla HOM05D007332 ORTHO05D009297 2.0e-15 87.0 228 35.5
RcHm_v2.0_Chr6g0296401 Rosa chinensis HOM05D007332 ORTHO05D009297 1.3e-14 84.3 245 33.9
Thecc.08G130400 Theobroma cacao HOM05D007332 ORTHO05D009297 1.3e-14 84.3 236 32.2
CsaV3_4G028070 Cucumis sativus L. HOM05D007332 ORTHO05D009297 2.8e-14 83.2 219 32.0
AT1G21695 Arabidopsis thaliana HOM05D011160 ORTHO05D013203 3.7e-14 82.8 229 37.6
SalBow7G3495 Salvia bowleyana HOM05D007332 ORTHO05D009297 3.7e-14 82.8 230 33.9
Glyma.04G246900 Glycine max HOM05D007332 ORTHO05D009297 6.3e-14 82.0 224 32.1
Psat5g085840 Pisum sativum HOM05D007332 ORTHO05D009297 1.1e-13 81.3 227 30.4
ECA232G0093 Erigeron canadensis HOM05D007332 ORTHO05D009297 1.4e-13 80.9 223 32.7
AL1G34860 Arabidopsis lyrata HOM05D011160 ORTHO05D013203 1.8e-13 80.5 201 36.8
MD15G1344600 Malus domestica HOM05D007332 ORTHO05D009297 1.8e-13 80.5 229 42.4
CARHR022050 Cardamine hirsuta HOM05D011160 ORTHO05D013203 2.4e-13 80.1 227 33.0
Glyma.06G115900 Glycine max HOM05D007332 ORTHO05D009297 3.1e-13 79.7 237 32.5
MSTRG.1422 Avicennia marina HOM05D007332 ORTHO05D009297 7.0e-13 78.6 228 35.1
A01p18880 Brassica napus HOM05D007332 ORTHO05D009297 7.0e-13 78.6 48 85.4
Prupe.1G492300 Prunus persica HOM05D007332 ORTHO05D009297 9.1e-13 78.2 237 39.7
TPR.G13457 Trifolium pratense HOM05D007332 ORTHO05D009297 3.5e-12 76.3 227 33.5
Migut.C01053 Erythranthe guttata HOM05D007332 ORTHO05D009297 5.9e-12 75.5 219 34.7
VMungo1309G0081 Vigna mungo HOM05D007332 ORTHO05D009297 7.7e-12 75.1 225 33.3
Thhalv10009307m.g Eutrema salsugineum HOM05D011160 ORTHO05D013203 1.7e-11 73.9 54 68.5
Medtr3g088400 Medicago truncatula HOM05D007332 ORTHO05D009297 1.7e-11 73.9 229 29.3
Nn1g08887 Nelumbo nucifera HOM05D007332 ORTHO05D009297 2.9e-11 73.2 255 30.6
TAR381G0705 Trochodendron aralioides HOM05D007332 ORTHO05D009297 1.1e-10 71.2 225 30.7
Actinidia15225 Actinidia chinensis HOM05D007332 ORTHO05D009297 1.9e-10 70.5 81 49.4
arahy.Tifrunner.gnm1.ann1.34D5TH Arachis hypogaea HOM05D007332 ORTHO05D009297 4.2e-10 69.3 203 32.5
BcaB07g32166 Brassica carinata HOM05D011160 ORTHO05D013203 4.2e-10 69.3 206 36.4
BcaC05g26088 Brassica carinata HOM05D011160 ORTHO05D013203 5.5e-10 68.9 64 59.4
C05p20670 Brassica napus HOM05D011160 ORTHO05D013203 5.5e-10 68.9 64 59.4
BolC5t30766H Brassica oleracea HOM05D011160 ORTHO05D013203 5.5e-10 68.9 64 59.4
HanXRQChr09g0260291 Helianthus annuus HOM05D007332 ORTHO05D009297 1.2e-09 67.8 228 33.3
Nn5g28415 Nelumbo nucifera HOM05D007332 ORTHO05D009297 2.1e-09 67.0 215 31.6
PGSC0003DMG400006046 Solanum tuberosum HOM05D007332 ORTHO05D009297 2.7e-09 66.6 228 30.7
Lsat_1_v5_gn_4_74261 Lactuca sativa HOM05D007332 ORTHO05D009297 3.6e-09 66.2 225 29.8
BraA06t24870Z Brassica rapa HOM05D011160 ORTHO05D013203 4.7e-09 65.9 199 34.2
A06p17780 Brassica napus HOM05D011160 ORTHO05D013203 6.1e-09 65.5 199 34.2
Sp1g19250 Schrenkiella parvula HOM05D011160 ORTHO05D013203 8.0e-09 65.1 229 36.2
FAN15G1303 Fragaria x ananassa HOM05D007332 ORTHO05D009297 1.0e-08 64.7 216 30.1
MBI06_g33108_MAGBIO Magnolia biondii HOM05D007332 ORTHO05D009297 1.0e-08 64.7 202 30.7
BcaB03g14257 Brassica carinata HOM05D011160 ORTHO05D013203 4.0e-08 62.8 209 33.5
A07p14960 Brassica napus HOM05D011160 ORTHO05D013203 5.2e-08 62.4 62 56.5
BraA07t29242Z Brassica rapa HOM05D011160 ORTHO05D013203 5.2e-08 62.4 62 56.5
Ca_16594_v3 Cicer arietinum L. HOM05D007332 ORTHO05D009297 1.5e-07 60.8 192 29.2
arahy.Tifrunner.gnm1.ann1.396V4Q Arachis hypogaea HOM05D007332 ORTHO05D009297 2.0e-07 60.5 205 29.8
Dinv14654 Davidia involucrata HOM05D007332 ORTHO05D009297 4.4e-07 59.3 218 28.9
BcaC06g34900 Brassica carinata HOM05D011160 ORTHO05D013203 9.8e-07 58.2 212 32.1
BolC7t42731H Brassica oleracea HOM05D011160 ORTHO05D013203 9.8e-07 58.2 212 32.1
C07p22010 Brassica napus HOM05D011160 ORTHO05D013203 1.7e-06 57.4 212 32.1


User provided reference genes

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