Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 1.7e-286 988.8 558 100.0
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 2.8e-188 662.5 584 68.0
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 1.2e-183 647.1 588 66.8
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 1.5e-181 640.2 585 67.0
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 4.8e-180 635.2 585 66.7
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 2.6e-170 602.8 580 64.8
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 8.9e-110 401.7 701 43.4
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 1.7e-81 307.8 414 48.3
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 2.2e-76 290.8 563 39.4
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 7.9e-74 282.3 563 39.6
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 5.8e-69 266.2 572 38.5
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 5.0e-60 236.5 563 35.7
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 3.9e-41 173.7 205 49.3
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 1.9e-35 154.8 209 44.0
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 3.7e-31 140.6 211 40.3
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 3.1e-30 137.5 200 42.0
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 2.7e-29 134.4 204 41.7
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 1.0e-28 132.5 174 42.5
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 2.9e-28 131.0 191 42.9
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 1.1e-27 129.0 145 51.0
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 1.5e-27 128.6 202 40.6
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 2.5e-27 127.9 221 37.6
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 4.2e-27 127.1 203 39.9
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 5.5e-27 126.7 221 38.0
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 9.4e-27 125.9 208 38.9
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 9.4e-27 125.9 197 39.6
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 8.0e-26 122.9 202 39.1
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 8.0e-26 122.9 212 40.6
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 3.0e-25 120.9 224 36.6
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 3.0e-25 120.9 220 35.9
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 4.0e-25 120.6 220 35.5
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 4.0e-25 120.6 220 35.5
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 5.2e-25 120.2 203 36.9
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 6.8e-25 119.8 220 35.5
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 8.8e-25 119.4 204 38.7
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.2e-24 119.0 213 36.2
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 1.5e-24 118.6 210 36.7
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 3.4e-24 117.5 139 44.6
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 3.4e-24 117.5 139 44.6
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.3e-23 115.5 213 35.7
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 2.4e-22 111.3 188 37.8
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 5.9e-21 106.7 184 38.6
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 2.5e-19 101.3 128 43.0
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 7.2e-19 99.8 197 33.5
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 4.0e-17 94.0 201 32.8
Sp1g19100 Schrenkiella parvula HOM05D012602 ORTHO05D003486 6.8e-17 93.2 143 41.3
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 8.8e-17 92.8 116 44.0
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 2.6e-16 91.3 202 32.7
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 1.7e-15 88.6 197 32.5
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 3.7e-15 87.4 205 35.1
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 4.9e-15 87.0 202 33.2
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 6.3e-15 86.7 202 32.7
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 6.3e-15 86.7 199 31.7
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 7.0e-14 83.2 199 27.6
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 9.2e-14 82.8 197 31.0
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 1.6e-13 82.0 184 31.0
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 2.0e-13 81.6 156 32.1
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 2.7e-13 81.3 126 39.7
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 7.7e-13 79.7 154 31.2
PSO528G0175 Papaver somniferum HOM05D020877 ORTHO05D003486 7.7e-13 79.7 188 31.4
Pp3c8_15980 Physcomitrium patens HOM05D006236 ORTHO05D003486 7.7e-13 79.7 123 39.8
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 1.3e-12 79.0 146 32.2
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 1.3e-12 79.0 196 34.2
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 1.7e-12 78.6 207 32.4
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 2.3e-12 78.2 105 42.9
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 2.3e-12 78.2 132 35.6
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 2.9e-12 77.8 155 34.8
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 3.8e-12 77.4 175 35.4
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 3.8e-12 77.4 134 38.8
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 5.0e-12 77.0 157 31.8
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 6.6e-12 76.6 102 46.1
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 6.6e-12 76.6 111 36.9
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 6.6e-12 76.6 204 32.4
PSO170G3037 Papaver somniferum HOM05D020877 ORTHO05D003486 8.6e-12 76.3 114 37.7
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 1.1e-11 75.9 111 39.6
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 1.9e-11 75.1 194 29.4
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 1.9e-11 75.1 213 28.2
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 3.3e-11 74.3 111 38.7
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 4.3e-11 73.9 205 28.8
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 4.3e-11 73.9 195 31.8
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 4.3e-11 73.9 104 37.5
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 5.6e-11 73.6 190 26.3
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 7.3e-11 73.2 104 40.4
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 1.2e-10 72.4 153 32.0
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 1.2e-10 72.4 101 38.6
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.6e-10 72.0 213 27.7
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 1.6e-10 72.0 197 28.4
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 1.6e-10 72.0 109 40.4
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 1.6e-10 72.0 188 28.7
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 2.1e-10 71.6 122 36.9
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 2.1e-10 71.6 111 36.0
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 2.1e-10 71.6 152 30.3
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 2.8e-10 71.2 110 41.8
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 2.8e-10 71.2 198 29.8
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 3.6e-10 70.9 178 29.8
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 4.7e-10 70.5 197 28.4
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 4.7e-10 70.5 198 28.8
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 6.1e-10 70.1 114 36.8
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 6.1e-10 70.1 121 28.1
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 6.1e-10 70.1 141 31.9
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 6.1e-10 70.1 108 37.0
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 8.0e-10 69.7 103 34.0
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 8.0e-10 69.7 104 37.5
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 8.0e-10 69.7 146 31.5
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 1.0e-09 69.3 136 33.1
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 1.8e-09 68.6 104 37.5
Ciclev10003901m.g Citrus clementina HOM05D006236 ORTHO05D003486 1.8e-09 68.6 135 36.3
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 2.3e-09 68.2 102 39.2
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.3e-09 68.2 213 27.2
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 2.3e-09 68.2 188 27.1
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 4.0e-09 67.4 102 38.2
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 4.0e-09 67.4 132 35.6
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 4.0e-09 67.4 132 35.6
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 5.2e-09 67.0 194 27.8
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 8.9e-09 66.2 113 32.7
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 1.5e-08 65.5 122 36.1
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 1.5e-08 65.5 104 36.5
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 2.0e-08 65.1 105 37.1
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 2.6e-08 64.7 104 34.6
Aqoxy6G00303 Aquilegia oxysepala HOM05D020429 ORTHO05D023582 3.4e-08 64.3 117 33.3
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 4.4e-08 63.9 211 27.0
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 5.7e-08 63.5 104 34.6
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 5.7e-08 63.5 107 33.6
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 5.7e-08 63.5 105 35.2
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 7.5e-08 63.2 132 30.3
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 9.8e-08 62.8 103 37.9
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 1.3e-07 62.4 132 30.3
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 1.7e-07 62.0 146 30.8
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 2.2e-07 61.6 161 28.0
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 2.9e-07 61.2 139 29.5
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 2.9e-07 61.2 105 32.4
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 4.9e-07 60.5 205 28.8
Zm00001eb385310 Zea mays HOM05D006236 ORTHO05D003486 6.4e-07 60.1 93 37.6
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 8.3e-07 59.7 146 27.4
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 1.1e-06 59.3 131 31.3
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 1.1e-06 59.3 131 31.3
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 1.1e-06 59.3 166 28.9
AagrBONN_evm.TU.Sc2ySwM_228.1542 Anthoceros agrestis HOM05D002377 ORTHO05D003486 1.8e-06 58.5 101 35.6
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 1.8e-06 58.5 68 42.6
Pp3c14_13780 Physcomitrium patens HOM05D002377 ORTHO05D003486 1.8e-06 58.5 110 35.5
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 4.1e-06 57.4 93 37.6
SalBow7G0481 Salvia bowleyana HOM05D006236 ORTHO05D003486 7.0e-06 56.6 104 35.6
SalBow7G2443 Salvia bowleyana HOM05D006236 ORTHO05D003486 7.0e-06 56.6 104 35.6
Mapoly0015s0190 Marchantia polymorpha HOM05D006236 ORTHO05D003486 9.2e-06 56.2 132 32.6
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 9.2e-06 56.2 114 34.2


User provided reference genes

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