Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24974 Brassica carinata HOM05D000192 ORTHO05D000123 7.6e-56 220.3 115 100.0
AL2G36280 Arabidopsis lyrata HOM05D000192 ORTHO05D000123 4.2e-22 108.2 169 45.6
AT1G76210 Arabidopsis thaliana HOM05D000192 ORTHO05D000123 7.2e-22 107.5 169 45.6
C06p50160 Brassica napus HOM05D000192 ORTHO05D000123 2.1e-21 105.9 118 56.8
BolC6t40056H Brassica oleracea HOM05D000192 ORTHO05D000123 2.1e-21 105.9 118 56.8
Thhalv10019849m.g Eutrema salsugineum HOM05D000192 ORTHO05D000123 7.9e-21 104.0 172 44.2
BcaC08g47280 Brassica carinata HOM05D000192 ORTHO05D000123 2.3e-20 102.4 169 43.8
A07p41780 Brassica napus HOM05D000192 ORTHO05D000123 2.3e-20 102.4 167 44.3
BraA07t31708Z Brassica rapa HOM05D000192 ORTHO05D000123 2.3e-20 102.4 167 44.3
Carub.0002s2311 Capsella rubella HOM05D000192 ORTHO05D000123 3.0e-20 102.1 169 43.2
Sp5g31360 Schrenkiella parvula HOM05D000192 ORTHO05D000123 3.0e-20 102.1 172 43.6
BcaC08g47116 Brassica carinata HOM05D000192 ORTHO05D000123 6.7e-20 100.9 168 42.9
CARHR069770 Cardamine hirsuta HOM05D000192 ORTHO05D000123 1.1e-19 100.1 171 43.3
THA.LOC104813759 Tarenaya hassleriana HOM05D000192 ORTHO05D000123 6.3e-18 94.4 126 49.2
Thhalv10008670m.g Eutrema salsugineum HOM05D000192 ORTHO05D000123 2.6e-16 89.0 152 40.1
Sp1g18230 Schrenkiella parvula HOM05D000192 ORTHO05D000123 2.2e-15 85.9 171 39.2
Thhalv10017569m.g Eutrema salsugineum HOM05D000192 ORTHO05D000123 2.9e-15 85.5 144 41.0
BcaB03g12864 Brassica carinata HOM05D000192 ORTHO05D000123 1.4e-14 83.2 153 38.6
BcaC07g39039 Brassica carinata HOM05D000192 ORTHO05D000123 1.9e-14 82.8 153 39.2
A08p29340 Brassica napus HOM05D000192 ORTHO05D000123 4.2e-14 81.6 153 38.6
C08p20210 Brassica napus HOM05D000192 ORTHO05D000123 4.2e-14 81.6 153 38.6
BolC8t49650H Brassica oleracea HOM05D000192 ORTHO05D000123 4.2e-14 81.6 153 38.6
BraA08t34869Z Brassica rapa HOM05D000192 ORTHO05D000123 4.2e-14 81.6 153 38.6
AT1G20520 Arabidopsis thaliana HOM05D000192 ORTHO05D000123 5.5e-14 81.3 108 49.1
CARHR020990 Cardamine hirsuta HOM05D000192 ORTHO05D000123 9.4e-14 80.5 151 39.1
Carub.0001s1999 Capsella rubella HOM05D000192 ORTHO05D000123 3.9e-12 75.1 108 47.2
BcaC08g47120 Brassica carinata HOM05D000192 ORTHO05D000123 8.2e-10 67.4 103 43.7
Aa31LG4G6310 Aethionema arabicum HOM05D000192 ORTHO05D000123 2.4e-09 65.9 118 39.0
Gohir.A01G107500 Gossypium hirsutum HOM05D000192 ORTHO05D000123 1.2e-08 63.5 110 38.2
Gohir.D01G093900 Gossypium hirsutum HOM05D000192 ORTHO05D000123 1.2e-08 63.5 110 38.2
Gorai.002G119200 Gossypium raimondii HOM05D000192 ORTHO05D000123 1.2e-08 63.5 110 38.2
FvH4_2g37620 Fragaria vesca HOM05D000192 ORTHO05D000123 1.5e-08 63.2 148 36.5
COL.COLO4_21599 Corchorus olitorius HOM05D000192 ORTHO05D000123 2.6e-08 62.4 116 37.1
FAN27G0353 Fragaria x ananassa HOM05D000192 ORTHO05D000123 4.5e-08 61.6 148 36.5
RcHm_v2.0_Chr6g0304111 Rosa chinensis HOM05D000192 ORTHO05D000123 5.9e-08 61.2 148 35.8
Thecc.08G056400 Theobroma cacao HOM05D000192 ORTHO05D000123 7.7e-08 60.8 110 38.2
Sabra02G0009900 Salix brachista HOM05D000192 ORTHO05D000123 1.0e-07 60.5 116 38.8
FAN20G2688 Fragaria x ananassa HOM05D000192 ORTHO05D000123 1.3e-07 60.1 148 35.8
MD15G1003300 Malus domestica HOM05D000192 ORTHO05D000123 1.3e-07 60.1 150 34.0
QL02p013854 Quercus lobata HOM05D000192 ORTHO05D000123 1.3e-07 60.1 110 37.3
PGR083G1204 Punica granatum HOM05D000192 ORTHO05D000123 1.7e-07 59.7 110 38.2
Cfa014052 Carpinus fangiana HOM05D000192 ORTHO05D000123 2.9e-07 58.9 110 37.3
Haze_22750 Corylus avellana HOM05D000192 ORTHO05D000123 2.9e-07 58.9 117 35.9
CiPaw.08G072000 Carya illinoinensis HOM05D000192 ORTHO05D000123 5.0e-07 58.2 144 33.3
CANSAT25G0398 Cannabis sativa HOM05D000192 ORTHO05D000123 1.1e-06 57.0 115 36.5
CANSAT25G3657 Cannabis sativa HOM05D000192 ORTHO05D000123 1.1e-06 57.0 115 36.5
Cpa.g.sc26.219 Carica papaya HOM05D000192 ORTHO05D000123 1.9e-06 56.2 114 35.1
Prupe.1G355700 Prunus persica HOM05D000192 ORTHO05D000123 2.5e-06 55.8 148 29.7
Glyma.07G197500 Glycine max HOM05D000192 ORTHO05D000123 3.2e-06 55.5 117 38.5
Manes.18G006600 Manihot esculenta HOM05D000192 ORTHO05D000123 3.2e-06 55.5 128 36.7
AL1G33450 Arabidopsis lyrata HOM05D000192 ORTHO05D000123 7.2e-06 54.3 60 56.7
Potri.005G248700 Populus trichocarpa HOM05D000192 ORTHO05D000123 7.2e-06 54.3 104 40.4


User provided reference genes

Program Settings