Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24973 Brassica carinata HOM05D006241 ORTHO05D007842 3.4e-34 147.5 62 100.0
BcaC08g47119 Brassica carinata HOM05D006241 ORTHO05D007842 8.3e-33 142.9 60 98.3
BcaC08g47281 Brassica carinata HOM05D006241 ORTHO05D007842 8.3e-33 142.9 60 98.3
A07p41770 Brassica napus HOM05D006241 ORTHO05D007842 8.3e-33 142.9 60 98.3
C06p50150 Brassica napus HOM05D006241 ORTHO05D007842 8.3e-33 142.9 60 98.3
BolC6t40055H Brassica oleracea HOM05D006241 ORTHO05D007842 8.3e-33 142.9 60 98.3
BraA07t31707Z Brassica rapa HOM05D006241 ORTHO05D007842 8.3e-33 142.9 60 98.3
BcaB02g07055 Brassica carinata HOM05D006241 ORTHO05D007842 4.1e-32 140.6 59 98.3
BcaC08g47115 Brassica carinata HOM05D006241 ORTHO05D007842 1.2e-31 139.0 58 98.3
BraA02t07081Z Brassica rapa HOM05D006241 ORTHO05D007842 2.0e-31 138.3 60 96.7
BraA07t30500Z Brassica rapa HOM05D006241 ORTHO05D007842 3.5e-31 137.5 59 96.6
A07p28590 Brassica napus HOM05D006241 ORTHO05D007842 1.3e-30 135.6 59 94.9
Carub.0002s2310 Capsella rubella HOM05D006241 ORTHO05D007842 1.7e-30 135.2 58 94.8
CARHR069760 Cardamine hirsuta HOM05D006241 ORTHO05D007842 1.7e-30 135.2 59 94.9
Sp5g31350 Schrenkiella parvula HOM05D006241 ORTHO05D007842 1.7e-30 135.2 58 94.8
AL2G36270 Arabidopsis lyrata HOM05D006241 ORTHO05D007842 5.0e-30 133.7 59 93.2
AT1G76200 Arabidopsis thaliana HOM05D006241 ORTHO05D007842 5.0e-30 133.7 59 93.2
BcaC08g45539 Brassica carinata HOM05D006241 ORTHO05D007842 1.1e-29 132.5 61 91.8
C06p32170 Brassica napus HOM05D006241 ORTHO05D007842 1.1e-29 132.5 61 91.8
BolC6t38340H Brassica oleracea HOM05D006241 ORTHO05D007842 1.1e-29 132.5 61 91.8
Thhalv10019410m.g Eutrema salsugineum HOM05D006241 ORTHO05D007842 1.8e-27 125.2 59 91.5
Lj3g0010530 Lotus japonicus HOM05D006241 ORTHO05D007842 3.0e-27 124.4 59 83.1
Aa31LG4G6300 Aethionema arabicum HOM05D006241 ORTHO05D007842 2.0e-26 121.7 59 83.1
Migut.N03197 Erythranthe guttata HOM05D006241 ORTHO05D007842 2.0e-26 121.7 62 80.6
SGA_v2.0_scaffold25G11191 Striga asiatica HOM05D006241 ORTHO05D007842 3.4e-26 120.9 61 78.7
Ca_19011_v3 Cicer arietinum L. HOM05D006241 ORTHO05D007842 5.7e-26 120.2 59 78.0
FvH4_2g37630 Fragaria vesca HOM05D006241 ORTHO05D007842 5.7e-26 120.2 59 81.4
Atru.chr13.161 Acer truncatum HOM05D006241 ORTHO05D007842 1.3e-25 119.0 63 77.8
MELO3C017010.2 Cucumis melo HOM05D006241 ORTHO05D007842 2.2e-25 118.2 65 75.4
Psat7g177480 Pisum sativum HOM05D006241 ORTHO05D007842 2.9e-25 117.9 63 74.6
arahy.Tifrunner.gnm1.ann1.1F1YZI Arachis hypogaea HOM05D006241 ORTHO05D007842 3.7e-25 117.5 59 76.3
arahy.Tifrunner.gnm1.ann1.1NSU2H Arachis hypogaea HOM05D006241 ORTHO05D007842 3.7e-25 117.5 59 76.3
arahy.Tifrunner.gnm1.ann1.4R2MNP Arachis hypogaea HOM05D006241 ORTHO05D007842 3.7e-25 117.5 59 76.3
arahy.Tifrunner.gnm1.ann1.L8CN1K Arachis hypogaea HOM05D006241 ORTHO05D007842 3.7e-25 117.5 59 76.3
CAN.G311.105 Capsicum annuum HOM05D006241 ORTHO05D007842 3.7e-25 117.5 60 76.7
COL.COLO4_21601 Corchorus olitorius HOM05D006241 ORTHO05D007842 3.7e-25 117.5 59 78.0
FAN15G0812 Fragaria x ananassa HOM05D006241 ORTHO05D007842 3.7e-25 117.5 58 81.0
Sabra05G0192000 Salix brachista HOM05D006241 ORTHO05D007842 3.7e-25 117.5 59 78.0
Thecc.08G056300 Theobroma cacao HOM05D006241 ORTHO05D007842 3.7e-25 117.5 62 75.8
TWI56G0163 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 3.7e-25 117.5 59 78.0
CsaV3_4G037120 Cucumis sativus L. HOM05D006241 ORTHO05D007842 4.9e-25 117.1 65 75.4
PGSC0003DMG400009898 Solanum tuberosum HOM05D006241 ORTHO05D007842 4.9e-25 117.1 60 76.7
CSS0008517 Camellia sinensis var. sinensis HOM05D006241 ORTHO05D007842 6.4e-25 116.7 65 72.3
Potri.005G248600 Populus trichocarpa HOM05D006241 ORTHO05D007842 6.4e-25 116.7 59 76.3
QL02p013848 Quercus lobata HOM05D006241 ORTHO05D007842 6.4e-25 116.7 59 74.6
TWI12G0416 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 6.4e-25 116.7 59 78.0
Cc10_g00830 Coffea canephora HOM05D006241 ORTHO05D007842 8.3e-25 116.3 63 73.0
PGR031G1817 Punica granatum HOM05D006241 ORTHO05D007842 8.3e-25 116.3 60 75.0
THA.LOC109116669 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 8.3e-25 116.3 62 74.2
Prupe.1G355800 Prunus persica HOM05D006241 ORTHO05D007842 1.1e-24 115.9 59 74.6
CiPaw.07G140100 Carya illinoinensis HOM05D006241 ORTHO05D007842 1.4e-24 115.5 62 75.8
Duzib093G0667 Durio zibethinus HOM05D006241 ORTHO05D007842 1.4e-24 115.5 59 76.3
Duzib116G0823 Durio zibethinus HOM05D006241 ORTHO05D007842 1.4e-24 115.5 59 76.3
PSO170G5266 Papaver somniferum HOM05D006241 ORTHO05D007842 1.4e-24 115.5 63 73.0
PSO357G0248 Papaver somniferum HOM05D006241 ORTHO05D007842 1.4e-24 115.5 63 73.0
THA.LOC104811457 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 1.4e-24 115.5 62 72.6
Glyma.11G099500 Glycine max HOM05D006241 ORTHO05D007842 1.8e-24 115.2 60 75.0
Glyma.12G025500 Glycine max HOM05D006241 ORTHO05D007842 1.8e-24 115.2 60 73.3
Manes.05G136000 Manihot esculenta HOM05D006241 ORTHO05D007842 2.4e-24 114.8 59 76.3
Eucgr.F01733 Eucalyptus grandis HOM05D006241 ORTHO05D007842 3.2e-24 114.4 64 71.9
Potri.002G012700 Populus trichocarpa HOM05D006241 ORTHO05D007842 3.2e-24 114.4 59 74.6
Gohir.A01G107600 Gossypium hirsutum HOM05D006241 ORTHO05D007842 4.1e-24 114.0 62 74.2
Gorai.009G189100 Gossypium raimondii HOM05D006241 ORTHO05D007842 4.1e-24 114.0 59 74.6
Manes.18G006720 Manihot esculenta HOM05D006241 ORTHO05D007842 4.1e-24 114.0 59 76.3
Lalb_Chr10g0094931 Lupinus albus HOM05D006241 ORTHO05D007842 5.4e-24 113.6 66 71.2
Nn5g30908 Nelumbo nucifera HOM05D006241 ORTHO05D007842 5.4e-24 113.6 64 68.8
TAR376G1175 Trochodendron aralioides HOM05D006241 ORTHO05D007842 5.4e-24 113.6 59 71.2
CiPaw.08G071900 Carya illinoinensis HOM05D006241 ORTHO05D007842 9.2e-24 112.8 59 74.6
Cpa.g.sc222.6 Carica papaya HOM05D006241 ORTHO05D007842 1.2e-23 112.5 59 72.9
Lalb_Chr17g0337811 Lupinus albus HOM05D006241 ORTHO05D007842 1.2e-23 112.5 64 71.9
Actinidia17033 Actinidia chinensis HOM05D006241 ORTHO05D007842 1.6e-23 112.1 59 72.9
Gohir.D05G183800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 1.6e-23 112.1 59 72.9
Gohir.D01G094000 Gossypium hirsutum HOM05D006241 ORTHO05D007842 2.0e-23 111.7 59 72.9
Gorai.002G119300 Gossypium raimondii HOM05D006241 ORTHO05D007842 2.0e-23 111.7 59 72.9
Phvul.011G027800 Phaseolus vulgaris HOM05D006241 ORTHO05D007842 2.0e-23 111.7 62 71.0
Gohir.A05G180800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 2.7e-23 111.3 59 74.6
Duzib041G0756 Durio zibethinus HOM05D006241 ORTHO05D007842 3.5e-23 110.9 62 71.0
Dinv39579 Davidia involucrata HOM05D006241 ORTHO05D007842 4.6e-23 110.5 65 67.7
Dinv31923 Davidia involucrata HOM05D006241 ORTHO05D007842 5.9e-23 110.2 64 68.8
Lsat_1_v5_gn_8_133721 Lactuca sativa HOM05D006241 ORTHO05D007842 7.8e-23 109.8 57 75.4
Actinidia15484 Actinidia chinensis HOM05D006241 ORTHO05D007842 1.0e-22 109.4 59 69.5
CANSAT54G0965 Cannabis sativa HOM05D006241 ORTHO05D007842 1.3e-22 109.0 60 66.7
TAR381G1678 Trochodendron aralioides HOM05D006241 ORTHO05D007842 1.7e-22 108.6 59 67.8
Aqoxy6G01804 Aquilegia oxysepala HOM05D006241 ORTHO05D007842 3.0e-22 107.8 56 73.2
Cfa014051 Carpinus fangiana HOM05D006241 ORTHO05D007842 5.0e-22 107.1 61 68.9
ECA248G1104 Erigeron canadensis HOM05D006241 ORTHO05D007842 5.0e-22 107.1 63 69.8
CDE05G0950 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 6.6e-22 106.7 59 67.8
CDE05G1511 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 6.6e-22 106.7 59 67.8
Ciclev10010113m.g Citrus clementina HOM05D006241 ORTHO05D007842 6.6e-22 106.7 62 67.7
Os05g0122900 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 4.3e-21 104.0 59 71.2
AagrBONN_evm.TU.Sc2ySwM_117.850 Anthoceros agrestis HOM05D006241 ORTHO05D007842 9.5e-21 102.8 55 69.1
BolC2t09367H Brassica oleracea HOM05D006241 ORTHO05D007842 9.5e-21 102.8 46 95.7
Zm00001eb294120 Zea mays HOM05D006241 ORTHO05D007842 1.6e-20 102.1 63 68.3
ATR0661G361 Amborella trichopoda HOM05D006241 ORTHO05D007842 2.8e-20 101.3 63 65.1
Zm00001eb356460 Zea mays HOM05D006241 ORTHO05D007842 3.6e-20 100.9 62 67.7
GSVIVG01008691001 Vitis vinifera HOM05D006241 ORTHO05D007842 1.0e-19 99.4 54 68.5
Os06g0725400 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 8.9e-19 96.3 59 67.8
Mapoly0103s0030 Marchantia polymorpha HOM05D006241 ORTHO05D007842 1.2e-18 95.9 58 63.8
Mapoly0108s0047 Marchantia polymorpha HOM05D006241 ORTHO05D007842 1.2e-18 95.9 58 62.1
Pp3c21_21340 Physcomitrium patens HOM05D006241 ORTHO05D007842 2.6e-18 94.7 62 59.7
Pp3c18_1920 Physcomitrium patens HOM05D006241 ORTHO05D007842 3.4e-18 94.4 63 58.7
MD08G1003800 Malus domestica HOM05D006241 ORTHO05D007842 9.8e-18 92.8 48 77.1
FAN20G1861 Fragaria x ananassa HOM05D006241 ORTHO05D007842 1.7e-17 92.0 47 80.9
VMungo1127G1075 Vigna mungo HOM05D006241 ORTHO05D007842 2.9e-17 91.3 60 68.3
MD15G1003400 Malus domestica HOM05D006241 ORTHO05D007842 3.7e-17 90.9 47 76.6
RcHm_v2.0_Chr6g0304101 Rosa chinensis HOM05D006241 ORTHO05D007842 6.4e-17 90.1 47 76.6
Nitab4.5_0000588g0230 Nicotiana tabacum HOM05D006241 ORTHO05D007842 8.3e-17 89.7 48 72.9
MBI19_g43741_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 4.6e-15 84.0 49 65.3
HPP92_021050 Vanilla planifolia HOM05D006241 ORTHO05D007842 7.8e-15 83.2 48 66.7
HanXRQChr17g0555751 Helianthus annuus HOM05D006241 ORTHO05D007842 2.3e-14 81.6 51 68.6
HanXRQChr17g0554651 Helianthus annuus HOM05D006241 ORTHO05D007842 3.0e-14 81.3 51 66.7
Hund08526 Selenicereus undatus HOM05D006241 ORTHO05D007842 1.9e-13 78.6 48 64.6
SalBow6G4847 Salvia bowleyana HOM05D006241 ORTHO05D007842 4.0e-11 70.9 47 68.1
DCAR_013903 Daucus carota HOM05D006241 ORTHO05D007842 1.3e-09 65.9 49 61.2
Sabra07G0051400 Salix brachista HOM05D006241 ORTHO05D349851 1.4e-08 62.4 48 56.2
vmacro04395 Vaccinium macrocarpon HOM05D006241 ORTHO05D007842 2.4e-08 61.6 27 77.8
Medtr4g075160 Medicago truncatula HOM05D006241 ORTHO05D007842 3.2e-08 61.2 38 71.1
Sed0002381 Sechium edule HOM05D006241 ORTHO05D007842 2.7e-07 58.2 32 71.9
ClCG05G015200 Citrullus lanatus HOM05D006241 ORTHO05D007842 3.5e-07 57.8 32 71.9
Ah.01g013010 Amaranthus hybridus HOM05D006241 ORTHO05D007842 6.0e-07 57.0 31 67.7
AUR62015196 Chenopodium quinoa HOM05D006241 ORTHO05D007842 1.3e-06 55.8 31 64.5
AUR62017658 Chenopodium quinoa HOM05D006241 ORTHO05D007842 1.3e-06 55.8 31 64.5
MCO07G568 Micromonas commoda HOM05D006241 ORTHO05D007842 1.3e-06 55.8 59 40.7
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 1.3e-06 55.8 33 72.7
MBI19_g35281_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 1.7e-06 55.5 34 58.8
Ah.01g001690 Amaranthus hybridus HOM05D006241 ORTHO05D007842 2.3e-06 55.1 31 64.5
DCAR_016755 Daucus carota HOM05D006241 ORTHO05D007842 3.9e-06 54.3 33 66.7
Nn6g31777 Nelumbo nucifera HOM05D006241 ORTHO05D007842 6.6e-06 53.5 35 60.0


User provided reference genes

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