Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24966 Brassica carinata HOM05D006215 ORTHO05D007719 5.0e-117 424.5 219 100.0
BcaB02g07052 Brassica carinata HOM05D006215 ORTHO05D007719 1.2e-99 366.7 219 86.3
A07p28630 Brassica napus HOM05D006215 ORTHO05D007719 1.5e-97 359.8 220 86.4
BraA07t30504Z Brassica rapa HOM05D006215 ORTHO05D007719 1.5e-97 359.8 220 86.4
C06p32240 Brassica napus HOM05D006215 ORTHO05D007719 8.4e-96 354.0 213 87.3
BolC6t38347H Brassica oleracea HOM05D006215 ORTHO05D007719 8.4e-96 354.0 213 87.3
BcaC08g45544 Brassica carinata HOM05D006215 ORTHO05D007719 1.1e-95 353.6 213 86.9
Thhalv10019087m.g Eutrema salsugineum HOM05D006215 ORTHO05D007719 3.5e-94 348.6 232 80.2
A07p41490 Brassica napus HOM05D006215 ORTHO05D007719 1.1e-92 343.6 216 82.9
BraA07t31681Z Brassica rapa HOM05D006215 ORTHO05D007719 1.1e-92 343.6 216 82.9
CARHR069510 Cardamine hirsuta HOM05D006215 ORTHO05D007719 1.1e-92 343.6 223 81.2
Carub.0002s2287 Capsella rubella HOM05D006215 ORTHO05D007719 5.6e-92 341.3 223 80.3
AL2G36000 Arabidopsis lyrata HOM05D006215 ORTHO05D007719 1.1e-90 337.0 226 78.3
Sp5g31100 Schrenkiella parvula HOM05D006215 ORTHO05D007719 1.2e-89 333.6 237 76.8
C06p49900 Brassica napus HOM05D006215 ORTHO05D007719 1.5e-89 333.2 217 79.7
BcaC08g47309 Brassica carinata HOM05D006215 ORTHO05D007719 6.4e-88 327.8 217 78.8
AT1G75980 Arabidopsis thaliana HOM05D006215 ORTHO05D007719 1.1e-87 327.0 227 76.2
Medtr3g114470 Medicago truncatula HOM05D006215 ORTHO05D007719 5.5e-71 271.6 183 71.6
DCAR_009503 Daucus carota HOM05D006215 ORTHO05D007719 1.6e-70 270.0 184 73.4
arahy.Tifrunner.gnm1.ann1.89BLSN Arachis hypogaea HOM05D006215 ORTHO05D007719 3.5e-70 268.9 176 73.9
Lj1g0006385 Lotus japonicus HOM05D006215 ORTHO05D007719 3.5e-70 268.9 202 67.3
Phvul.009G018900 Phaseolus vulgaris HOM05D006215 ORTHO05D007719 3.5e-70 268.9 190 68.9
Potri.002G018100 Populus trichocarpa HOM05D006215 ORTHO05D007719 4.6e-70 268.5 202 68.8
Cpa.g.sc26.282 Carica papaya HOM05D006215 ORTHO05D007719 3.0e-69 265.8 196 68.9
VMungo1215G3215 Vigna mungo HOM05D006215 ORTHO05D007719 3.0e-69 265.8 190 69.5
Prupe.4G165400 Prunus persica HOM05D006215 ORTHO05D007719 5.1e-69 265.0 200 67.5
Atru.chr13.240 Acer truncatum HOM05D006215 ORTHO05D007719 6.7e-69 264.6 199 67.8
PGSC0003DMG400009949 Solanum tuberosum HOM05D006215 ORTHO05D007719 6.7e-69 264.6 182 70.3
Thecc.08G049400 Theobroma cacao HOM05D006215 ORTHO05D007719 8.7e-69 264.2 177 71.2
Ciclev10002478m.g Citrus clementina HOM05D006215 ORTHO05D007719 1.1e-68 263.8 205 68.3
Gohir.A01G109400 Gossypium hirsutum HOM05D006215 ORTHO05D007719 1.1e-68 263.8 211 64.9
Gohir.D01G096200 Gossypium hirsutum HOM05D006215 ORTHO05D007719 1.1e-68 263.8 215 63.7
COL.COLO4_26102 Corchorus olitorius HOM05D006215 ORTHO05D007719 1.5e-68 263.5 208 63.9
Sopen04g035480 Solanum pennellii HOM05D006215 ORTHO05D007719 3.3e-68 262.3 182 69.8
QL02p012562 Quercus lobata HOM05D006215 ORTHO05D007719 5.6e-68 261.5 176 72.7
Glyma.04G021700 Glycine max HOM05D006215 ORTHO05D007719 7.4e-68 261.2 180 68.9
Gorai.002G121700 Gossypium raimondii HOM05D006215 ORTHO05D007719 9.6e-68 260.8 215 62.8
Duzib041G0142 Durio zibethinus HOM05D006215 ORTHO05D007719 1.3e-67 260.4 213 62.4
Solyc04g081850.4 Solanum lycopersicum HOM05D006215 ORTHO05D007719 1.3e-67 260.4 182 69.2
Lsat_1_v5_gn_8_29640 Lactuca sativa HOM05D006215 ORTHO05D007719 1.6e-67 260.0 175 71.4
Psat5g012560 Pisum sativum HOM05D006215 ORTHO05D007719 2.1e-67 259.6 205 64.4
THA.LOC104811433 Tarenaya hassleriana HOM05D006215 ORTHO05D007719 2.1e-67 259.6 199 65.8
Glyma.06G021900 Glycine max HOM05D006215 ORTHO05D007719 2.8e-67 259.2 193 66.8
Cfa013993 Carpinus fangiana HOM05D006215 ORTHO05D007719 4.8e-67 258.5 181 70.7
Ca_15473_v3 Cicer arietinum L. HOM05D006215 ORTHO05D007719 4.8e-67 258.5 205 65.9
vmacro21863 Vaccinium macrocarpon HOM05D006215 ORTHO05D007719 1.1e-66 257.3 197 66.0
CSS0039588 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 1.8e-66 256.5 173 72.3
Lalb_Chr23g0266051 Lupinus albus HOM05D006215 ORTHO05D007719 2.4e-66 256.1 200 67.5
Lj4C18G8 Lonicera japonica HOM05D000114 ORTHO05D009837 3.1e-66 255.8 216 59.3
TWI12G0400 Tripterygium wilfordii HOM05D006215 ORTHO05D007719 3.1e-66 255.8 178 71.3
MD03G1242500 Malus domestica HOM05D006215 ORTHO05D007719 4.0e-66 255.4 199 65.3
SGA_v2.0_scaffold292G47375 Striga asiatica HOM05D006215 ORTHO05D007719 4.0e-66 255.4 174 69.0
CSS0005676 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 5.3e-66 255.0 173 71.7
Manes.18G010300 Manihot esculenta HOM05D006215 ORTHO05D007719 6.9e-66 254.6 206 63.6
MSTRG.1158 Avicennia marina HOM05D006215 ORTHO05D007719 1.2e-65 253.8 170 71.2
Nn5g30812 Nelumbo nucifera HOM05D006215 ORTHO05D007719 1.2e-65 253.8 175 69.7
GSVIVG01009974001 Vitis vinifera HOM05D006215 ORTHO05D009429 2.0e-65 253.1 173 71.1
HanXRQChr13g0386921 Helianthus annuus HOM05D006215 ORTHO05D007719 2.6e-65 252.7 172 70.9
CANSAT25G1322 Cannabis sativa HOM05D006215 ORTHO05D007719 4.5e-65 251.9 203 65.0
Sabra02G0014400 Salix brachista HOM05D006215 ORTHO05D007719 4.5e-65 251.9 225 60.4
FAN11G1504 Fragaria x ananassa HOM05D006215 ORTHO05D007719 5.8e-65 251.5 191 67.0
Rhsim06G0017400 Rhododendron simsii HOM05D006215 ORTHO05D007719 5.8e-65 251.5 217 59.9
Migut.C00887 Erythranthe guttata HOM05D006215 ORTHO05D007719 7.6e-65 251.1 169 70.4
RcHm_v2.0_Chr5g0031011 Rosa chinensis HOM05D006215 ORTHO05D007719 2.9e-64 249.2 203 63.5
HPP92_025438 Vanilla planifolia HOM05D006215 ORTHO05D007719 3.8e-64 248.8 180 64.4
Dinv31883 Davidia involucrata HOM05D006215 ORTHO05D007719 4.9e-64 248.4 226 59.3
CANSAT80G2378 Cannabis sativa HOM05D006215 ORTHO05D007719 1.1e-63 247.3 182 66.5
CsaV3_3G046060 Cucumis sativus L. HOM05D006215 ORTHO05D007719 1.9e-63 246.5 210 61.4
ECA233G5922 Erigeron canadensis HOM05D000114 ORTHO05D000075 3.2e-63 245.7 176 67.0
FAN25G2739 Fragaria x ananassa HOM05D006215 ORTHO05D007719 4.2e-63 245.4 199 62.8
CAN.G311.58 Capsicum annuum HOM05D006215 ORTHO05D007719 9.3e-63 244.2 202 63.4
Sed0008956 Sechium edule HOM05D006215 ORTHO05D007719 3.5e-62 242.3 208 59.1
EL10Ac1g02129 Beta vulgaris HOM05D006215 ORTHO05D007719 7.9e-62 241.1 175 64.0
Hund01696 Selenicereus undatus HOM05D006215 ORTHO05D007719 5.1e-61 238.4 192 61.5
Aqoxy5G01831 Aquilegia oxysepala HOM05D006215 ORTHO05D007719 8.7e-61 237.7 173 65.3
PSO339G6481 Papaver somniferum HOM05D006215 ORTHO05D007719 3.3e-60 235.7 183 65.0
Zm00001eb209250 Zea mays HOM05D006215 ORTHO05D007719 9.6e-60 234.2 176 59.7
unitig_32.g11202 Utricularia gibba HOM05D006215 ORTHO05D007719 1.3e-59 233.8 176 64.2
AUR62013912 Chenopodium quinoa HOM05D006215 ORTHO05D007719 2.8e-59 232.6 170 64.1
SalBow7G2905 Salvia bowleyana HOM05D006215 ORTHO05D007719 1.4e-58 230.3 219 56.6
PSO384G0480 Papaver somniferum HOM05D006215 ORTHO05D007719 3.1e-58 229.2 186 64.0
MELO3C003734.2 Cucumis melo HOM05D006215 ORTHO05D007719 6.9e-58 228.0 203 60.1
Oeu033622.1 Olea europaea HOM05D006215 ORTHO05D007719 9.0e-58 227.6 211 56.9
CDE04G3084 Ceratophyllum demersum HOM05D006215 ORTHO05D007719 2.7e-54 216.1 174 64.4
Nitab4.5_0004361g0040 Nicotiana tabacum HOM05D006215 ORTHO05D007719 1.0e-53 214.2 150 69.3
CiPaw.07G144900 Carya illinoinensis HOM05D006215 ORTHO05D007719 2.3e-53 213.0 159 66.0
Rhsim06G0015300 Rhododendron simsii HOM05D006215 ORTHO05D007719 6.7e-53 211.5 217 53.9
ClCG05G015490 Citrullus lanatus HOM05D006215 ORTHO05D007719 1.1e-52 210.7 200 58.0
Os02g0120400 Oryza sativa ssp. japonica HOM05D006215 ORTHO05D007719 3.7e-51 205.7 137 67.2
Eucgr.F03725 Eucalyptus grandis HOM05D006215 ORTHO05D007719 6.3e-51 204.9 148 66.9
TPR.G38171 Trifolium pratense HOM05D006215 ORTHO05D007719 1.1e-50 204.1 164 67.7
Aa31LG4G6130 Aethionema arabicum HOM05D006215 ORTHO05D007719 4.1e-50 202.2 225 55.1
FvH4_3g18360 Fragaria vesca HOM05D006215 ORTHO05D007719 6.9e-50 201.4 159 64.8
Actinidia15453 Actinidia chinensis HOM05D006215 ORTHO05D007719 1.4e-47 193.7 174 58.0
Peaxi162Scf00860g00212 Petunia axillaris HOM05D006215 ORTHO05D007719 4.2e-47 192.2 181 56.9
PGR083G2507 Punica granatum HOM05D006215 ORTHO05D007719 1.6e-46 190.3 205 55.1
AUR62018279 Chenopodium quinoa HOM05D006215 ORTHO05D007719 6.1e-46 188.3 171 54.4
ATR1088G027 Amborella trichopoda HOM05D006215 ORTHO05D007719 3.0e-45 186.0 153 64.7
Mapoly0001s0313 Marchantia polymorpha HOM05D006215 ORTHO05D007719 5.1e-45 185.3 163 51.5
TAR625G0502 Trochodendron aralioides HOM05D006215 ORTHO05D007719 2.0e-44 183.3 141 63.8
arahy.Tifrunner.gnm1.ann1.SEC0EX Arachis hypogaea HOM05D006215 ORTHO05D007719 9.7e-44 181.0 192 52.1
Pp3c20_3890 Physcomitrium patens HOM05D006215 ORTHO05D007719 2.2e-43 179.9 212 46.2
Duzib093G1443 Durio zibethinus HOM05D006215 ORTHO05D007719 2.4e-42 176.4 124 69.4
BolC6t40028H Brassica oleracea HOM05D006215 ORTHO05D007719 3.1e-42 176.0 122 74.6
SMO367G0408 Selaginella moellendorffii HOM05D006215 ORTHO05D007719 9.1e-42 174.5 177 48.0
Actinidia17011 Actinidia chinensis HOM05D006215 ORTHO05D007719 1.1e-39 167.5 157 56.1
Sc15g0004750 Simmondsia chinensis HOM05D006215 ORTHO05D007719 1.0e-32 144.4 156 50.6
FAN21G0515 Fragaria x ananassa HOM05D006215 ORTHO05D007719 1.3e-32 144.1 199 43.7
Cc10_g01280 Coffea canephora HOM05D006215 ORTHO05D007719 4.2e-31 139.0 101 63.4
Haze_22683 Corylus avellana HOM05D006215 ORTHO05D007719 8.0e-30 134.8 102 63.7
CANSAT25G3730 Cannabis sativa HOM05D006215 ORTHO05D007719 4.0e-29 132.5 96 64.6
Carub.0005s0222 Capsella rubella HOM05D006215 ORTHO05D007719 1.5e-28 130.6 71 93.0
SHI08014 Sapria himalayana HOM05D006215 ORTHO05D007719 5.7e-28 128.6 94 63.8
CBR_g54848 Chara braunii HOM05D006215 ORTHO05D007719 2.8e-27 126.3 127 53.5
Eucgr.F03727 Eucalyptus grandis HOM05D006215 ORTHO05D007719 6.3e-27 125.2 84 73.8
Cc10_g01290 Coffea canephora HOM05D006215 ORTHO05D007719 2.7e-25 119.8 87 66.7
Ah.06g187190 Amaranthus hybridus HOM05D006215 ORTHO05D007719 3.8e-24 115.9 140 47.1
BcaC03g15638 Brassica carinata HOM05D006215 ORTHO05D007719 8.5e-24 114.8 99 67.7
SEGI_18034 Sequoiadendron giganteum HOM05D006215 ORTHO05D007719 1.4e-21 107.5 79 60.8
Glyma.02G160800 Glycine max HOM05D006215 ORTHO05D007719 8.8e-21 104.8 59 81.4
Medtr6g083100 Medicago truncatula HOM05D006215 ORTHO05D007719 2.8e-19 99.8 122 49.2
AagrBONN_evm.TU.Sc2ySwM_117.1002 Anthoceros agrestis HOM05D006215 ORTHO05D007719 8.3e-19 98.2 161 41.6
C02p33520 Brassica napus HOM05D006215 ORTHO05D007719 3.1e-18 96.3 69 78.3
BolC2t09353H Brassica oleracea HOM05D006215 ORTHO05D007719 6.5e-16 88.6 69 72.5
A02p20380 Brassica napus HOM05D006215 ORTHO05D007719 1.4e-13 80.9 58 74.1
Lsat_1_v5_gn_4_111221 Lactuca sativa HOM05D006215 ORTHO05D007719 3.4e-12 76.3 51 70.6
MCO13G478 Micromonas commoda HOM05D006215 ORTHO05D007719 8.3e-11 71.6 237 24.1
TPR.G38152 Trifolium pratense HOM05D006215 ORTHO05D007719 1.5e-07 60.8 48 54.2
MD11G1262900 Malus domestica HOM05D006215 ORTHO05D007719 4.3e-07 59.3 35 85.7


User provided reference genes

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