Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24937 Brassica carinata HOM05D010473 ORTHO05D007577 1.0e-307 1059.3 569 100.0
BcaC03g15614 Brassica carinata HOM05D010473 ORTHO05D007577 5.2e-198 694.9 463 82.7
BcaC03g15618 Brassica carinata HOM05D010473 ORTHO05D007577 1.8e-187 659.8 559 72.8
C02p33740 Brassica napus HOM05D010473 ORTHO05D007577 1.6e-186 656.8 594 69.4
A02p20200 Brassica napus HOM05D010473 ORTHO05D007577 2.7e-186 656.0 546 73.1
BolC2t09331H Brassica oleracea HOM05D010473 ORTHO05D007577 1.1e-182 644.0 552 71.9
Sp5g30850 Schrenkiella parvula HOM05D010473 ORTHO05D007577 4.1e-179 632.1 619 65.1
BraA02t07054Z Brassica rapa HOM05D010473 ORTHO05D007577 8.6e-177 624.4 552 69.9
Thhalv10018322m.g Eutrema salsugineum HOM05D010473 ORTHO05D007577 2.8e-167 592.8 617 62.1
AT1G75730 Arabidopsis thaliana HOM05D010473 ORTHO05D007577 2.8e-151 539.7 624 58.7
AL2G35720 Arabidopsis lyrata HOM05D010473 ORTHO05D007577 2.1e-143 513.5 622 56.6
Carub.0002s2258 Capsella rubella HOM05D010473 ORTHO05D007577 1.3e-137 494.2 627 54.7
BraA07t31661Z Brassica rapa HOM05D010473 ORTHO05D007577 1.5e-133 480.7 609 56.5
CARHR069140 Cardamine hirsuta HOM05D010473 ORTHO05D007577 1.3e-127 461.1 616 53.7
A07p41260 Brassica napus HOM05D010473 ORTHO05D007577 3.7e-127 459.5 552 58.0
C06p49680 Brassica napus HOM05D010473 ORTHO05D007577 1.1e-112 411.4 550 54.4
BolC6t40007H Brassica oleracea HOM05D010473 ORTHO05D007577 2.2e-108 397.1 574 52.1
Aa31LG4G5960 Aethionema arabicum HOM05D010473 ORTHO05D007577 5.6e-75 286.2 657 40.2
BcaC08g47058 Brassica carinata HOM05D010473 ORTHO05D007577 2.6e-40 171.0 250 52.0
BcaC08g47047 Brassica carinata HOM05D010473 ORTHO05D007577 2.6e-32 144.4 131 67.9
THA.LOC104814031 Tarenaya hassleriana HOM05D010473 ORTHO05D007577 1.3e-31 142.1 611 33.1
Ciclev10000382m.g Citrus clementina HOM05D007378 ORTHO05D007577 1.8e-28 131.7 713 28.1
Thecc.08G043900 Theobroma cacao HOM05D007378 ORTHO05D007577 7.4e-27 126.3 717 27.9
Potri.005G238800 Populus trichocarpa HOM05D007378 ORTHO05D007577 2.6e-24 117.9 672 28.3
Duzib093G0923 Durio zibethinus HOM05D007378 ORTHO05D007577 2.7e-21 107.8 692 26.2
Cfa013945 Carpinus fangiana HOM05D007378 ORTHO05D007577 1.3e-20 105.5 626 27.0
Potri.002G022800 Populus trichocarpa HOM05D007378 ORTHO05D007577 5.1e-20 103.6 679 28.3
Haze_22630 Corylus avellana HOM05D007378 ORTHO05D007577 5.6e-19 100.1 635 27.2
MD15G1012700 Malus domestica HOM05D007378 ORTHO05D007577 3.7e-18 97.4 682 27.4
Sabra05G0184500 Salix brachista HOM05D007378 ORTHO05D007577 8.2e-18 96.3 675 27.3
Migut.C00828 Erythranthe guttata HOM05D007378 ORTHO05D007577 2.4e-17 94.7 452 29.0
MD08G1013300 Malus domestica HOM05D007378 ORTHO05D007577 9.0e-17 92.8 700 25.3
Manes.05G147800 Manihot esculenta HOM05D007378 ORTHO05D007577 1.2e-16 92.4 666 27.2
CSS0021578 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 2.0e-16 91.7 706 27.2
Duzib116G0067 Durio zibethinus HOM05D007378 ORTHO05D007577 2.0e-16 91.7 613 26.3
Actinidia16984 Actinidia chinensis HOM05D007378 ORTHO05D007577 5.8e-16 90.1 543 28.5
Actinidia15419 Actinidia chinensis HOM05D007378 ORTHO05D007577 7.6e-16 89.7 626 27.3
Prupe.1G365800 Prunus persica HOM05D007378 ORTHO05D007577 4.9e-15 87.0 597 26.3
CAN.G311.27 Capsicum annuum HOM05D007378 ORTHO05D007577 8.4e-15 86.3 402 30.3
Sabra02G0018600 Salix brachista HOM05D007378 ORTHO05D007577 8.4e-15 86.3 674 26.7
Hma1.2p1_0023F.1_g015450 Hydrangea macrophylla HOM05D007378 ORTHO05D007577 1.1e-14 85.9 674 24.9
CiPaw.07G150400 Carya illinoinensis HOM05D007378 ORTHO05D007577 1.4e-14 85.5 575 28.7
Sopen04g035030 Solanum pennellii HOM05D007378 ORTHO05D007577 1.4e-14 85.5 516 28.1
Solyc04g081420.4 Solanum lycopersicum HOM05D007378 ORTHO05D007577 1.9e-14 85.1 508 27.2
Dinv31841 Davidia involucrata HOM05D007378 ORTHO05D007577 5.5e-14 83.6 689 26.6
PGSC0003DMG400009935 Solanum tuberosum HOM05D007378 ORTHO05D007577 1.6e-13 82.0 517 28.0
Eucgr.F00598 Eucalyptus grandis HOM05D007378 ORTHO05D007577 3.5e-13 80.9 672 26.2
Lj1g0027004 Lotus japonicus HOM05D007378 ORTHO05D007577 7.9e-13 79.7 689 25.5
GSVIVG01009901001 Vitis vinifera HOM05D007378 ORTHO05D007577 7.9e-13 79.7 517 26.5
Nitab4.5_0002561g0040 Nicotiana tabacum HOM05D007378 ORTHO05D007577 1.0e-12 79.3 305 28.5
Glyma.14G219000 Glycine max HOM05D007378 ORTHO05D007577 1.8e-12 78.6 552 26.6
Ca_15483_v3 Cicer arietinum L. HOM05D007378 ORTHO05D007577 5.1e-12 77.0 643 26.3
Duzib041G0240 Durio zibethinus HOM05D007378 ORTHO05D007577 1.1e-11 75.9 113 46.9
Atru.chr13.296 Acer truncatum HOM05D007378 ORTHO05D007577 1.5e-11 75.5 413 28.3
CSS0010969 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 7.4e-11 73.2 395 27.6
Manes.18G013740 Manihot esculenta HOM05D007378 ORTHO05D007577 7.4e-11 73.2 620 27.6
VMungo1309G2950 Vigna mungo HOM05D007378 ORTHO05D007577 7.4e-11 73.2 460 26.3
Peaxi162Scf00438g00718 Petunia axillaris HOM05D007378 ORTHO05D007577 9.7e-11 72.8 392 28.8
QL02p011519 Quercus lobata HOM05D007378 ORTHO05D007577 1.3e-10 72.4 176 36.9
CANSAT25G3202 Cannabis sativa HOM05D007378 ORTHO05D007577 2.2e-10 71.6 645 25.0
CSS0029124 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 4.8e-10 70.5 101 48.5
Lalb_Chr11g0061931 Lupinus albus HOM05D007378 ORTHO05D007577 6.3e-10 70.1 360 28.6
DCAR_013867 Daucus carota HOM05D007378 ORTHO05D007577 8.2e-10 69.7 359 26.7
MSTRG.25246 Avicennia marina HOM05D007378 ORTHO05D007577 1.1e-09 69.3 647 25.8
Ca_13427_v3 Cicer arietinum L. HOM05D007378 ORTHO05D007577 1.4e-09 68.9 507 26.2
COL.COLO4_26152 Corchorus olitorius HOM05D007378 ORTHO05D007577 1.8e-09 68.6 142 40.8
Glyma.17G258000 Glycine max HOM05D007378 ORTHO05D007577 3.1e-09 67.8 554 24.9
RcHm_v2.0_Chr6g0302801 Rosa chinensis HOM05D007378 ORTHO05D007577 3.1e-09 67.8 593 25.5
CSS0024961 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 5.3e-09 67.0 256 32.0
Cpa.g.sc26.38 Carica papaya HOM05D007378 ORTHO05D007577 6.9e-09 66.6 137 41.6
Duzib041G0283 Durio zibethinus HOM05D007378 ORTHO05D007577 1.2e-08 65.9 358 26.0
vmacro21724 Vaccinium macrocarpon HOM05D007378 ORTHO05D007577 2.0e-08 65.1 435 28.0
Aqoxy5G01785 Aquilegia oxysepala HOM05D007378 ORTHO05D007577 2.6e-08 64.7 695 24.0
Lj5g0002996 Lotus japonicus HOM05D007378 ORTHO05D007577 2.6e-08 64.7 516 26.6
TPR.G34540 Trifolium pratense HOM05D007378 ORTHO05D007577 3.4e-08 64.3 104 49.0
arahy.Tifrunner.gnm1.ann1.WP2VUZ Arachis hypogaea HOM05D007378 ORTHO05D007577 5.9e-08 63.5 111 47.7
arahy.Tifrunner.gnm1.ann1.KUKA7T Arachis hypogaea HOM05D007378 ORTHO05D007577 7.7e-08 63.2 111 47.7
Nn5g30152 Nelumbo nucifera HOM05D007378 ORTHO05D007577 7.7e-08 63.2 468 26.3
Dinv39514 Davidia involucrata HOM05D007378 ORTHO05D007577 1.3e-07 62.4 700 24.3
TPR.G26373 Trifolium pratense HOM05D007378 ORTHO05D007577 1.7e-07 62.0 487 26.3
Hund05208 Selenicereus undatus HOM05D007378 ORTHO05D007577 2.9e-07 61.2 466 26.0
Glyma.04G024500 Glycine max HOM05D007378 ORTHO05D007577 3.8e-07 60.8 492 26.8
Sc15g0005020 Simmondsia chinensis HOM05D007378 ORTHO05D007577 3.8e-07 60.8 434 27.2
CiPaw.08G066200 Carya illinoinensis HOM05D007378 ORTHO05D007577 6.5e-07 60.1 168 36.9
Medtr3g113840 Medicago truncatula HOM05D007378 ORTHO05D007577 6.5e-07 60.1 96 46.9
Phvul.009G016700 Phaseolus vulgaris HOM05D007378 ORTHO05D007577 8.5e-07 59.7 108 42.6
Glyma.06G024600 Glycine max HOM05D007378 ORTHO05D007577 1.1e-06 59.3 591 25.2
TWI12G0183 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 1.9e-06 58.5 578 26.5
Medtr1g025180 Medicago truncatula HOM05D007378 ORTHO05D007577 2.5e-06 58.2 536 25.7
FvH4_2g38520 Fragaria vesca HOM05D007378 ORTHO05D007577 3.2e-06 57.8 478 25.7
Psat5g013200 Pisum sativum HOM05D007378 ORTHO05D007577 4.2e-06 57.4 129 41.1
TWI36G1616 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 4.2e-06 57.4 127 38.6
TWI56G0017 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 5.5e-06 57.0 284 31.7
SalBow7G4715 Salvia bowleyana HOM05D007378 ORTHO05D007577 9.4e-06 56.2 557 25.5


User provided reference genes

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