Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24936 Brassica carinata HOM05D002661 ORTHO05D002786 7.6e-84 313.9 174 100.0
A02p20180 Brassica napus HOM05D002661 ORTHO05D002786 4.5e-60 235.0 204 70.1
BraA02t07053Z Brassica rapa HOM05D002661 ORTHO05D002786 1.3e-54 216.9 191 69.1
C02p33750 Brassica napus HOM05D002661 ORTHO05D002786 8.0e-49 197.6 191 66.0
Sp5g30840 Schrenkiella parvula HOM05D002661 ORTHO05D002786 2.3e-48 196.1 201 62.7
AT1G75720 Arabidopsis thaliana HOM05D002661 ORTHO05D002786 2.0e-47 193.0 194 60.8
BcaC03g15617 Brassica carinata HOM05D002661 ORTHO05D002786 2.6e-47 192.6 182 64.8
Thhalv10019714m.g Eutrema salsugineum HOM05D002661 ORTHO05D002786 1.7e-46 189.9 199 59.3
AL2G35710 Arabidopsis lyrata HOM05D002661 ORTHO05D002786 6.3e-46 188.0 202 59.9
BolC6t40006H Brassica oleracea HOM05D002661 ORTHO05D002786 1.8e-45 186.4 202 60.4
C06p49670 Brassica napus HOM05D002661 ORTHO05D002786 3.5e-44 182.2 224 57.1
BcaC08g47048 Brassica carinata HOM05D002661 ORTHO05D002786 2.2e-43 179.5 200 59.5
A07p41250 Brassica napus HOM05D002661 ORTHO05D002786 8.5e-43 177.6 224 56.2
BraA07t31660Z Brassica rapa HOM05D002661 ORTHO05D002786 8.5e-43 177.6 224 56.2
BolC2t09330H Brassica oleracea HOM05D002661 ORTHO05D002786 3.0e-40 169.1 190 60.0
Carub.0002s2257 Capsella rubella HOM05D002661 ORTHO05D002786 7.2e-34 147.9 201 51.7
CARHR069130 Cardamine hirsuta HOM05D002661 ORTHO05D002786 3.8e-27 125.6 198 48.5
THA.LOC104811385 Tarenaya hassleriana HOM05D002661 ORTHO05D002786 5.4e-21 105.1 201 44.3
MBI05_g15357_MAGBIO Magnolia biondii HOM05D002661 ORTHO05D002786 2.3e-19 99.8 204 42.2
TAR381G1099 Trochodendron aralioides HOM05D002661 ORTHO05D002786 5.6e-18 95.1 200 40.0
Duzib041G0251 Durio zibethinus HOM05D002661 ORTHO05D002786 2.1e-17 93.2 196 41.3
Lsat_1_v5_gn_2_10300 Lactuca sativa HOM05D002661 ORTHO05D002786 2.1e-17 93.2 208 41.3
Aa31LG4G5950 Aethionema arabicum HOM05D002661 ORTHO05D002786 1.0e-16 90.9 187 39.0
QL02p011493 Quercus lobata HOM05D002661 ORTHO05D002786 1.0e-16 90.9 197 41.1
Ciclev10002504m.g Citrus clementina HOM05D002661 ORTHO05D002786 1.4e-16 90.5 200 42.0
Aqoxy4G02812 Aquilegia oxysepala HOM05D002661 ORTHO05D002786 1.8e-16 90.1 202 40.1
COL.COLO4_26155 Corchorus olitorius HOM05D002661 ORTHO05D002786 4.0e-16 89.0 200 41.0
Nn5g30157 Nelumbo nucifera HOM05D002661 ORTHO05D002786 4.0e-16 89.0 203 40.9
Phvul.009G016600 Phaseolus vulgaris HOM05D002661 ORTHO05D002786 8.9e-16 87.8 204 39.2
Dinv39512 Davidia involucrata HOM05D002661 ORTHO05D002786 2.6e-15 86.3 180 41.1
vmacro04348 Vaccinium macrocarpon HOM05D002661 ORTHO05D002786 5.8e-15 85.1 195 38.5
Sabra05G0184300 Salix brachista HOM05D002661 ORTHO05D002786 7.5e-15 84.7 200 39.5
DCAR_013866 Daucus carota HOM05D002661 ORTHO05D002786 1.3e-14 84.0 205 38.5
Rhsim07G0246900 Rhododendron simsii HOM05D002661 ORTHO05D002786 1.3e-14 84.0 201 37.8
Gorai.009G270100 Gossypium raimondii HOM05D002661 ORTHO05D002786 2.2e-14 83.2 202 37.6
Gohir.A05G257100 Gossypium hirsutum HOM05D002661 ORTHO05D002786 6.4e-14 81.6 202 37.1
Haze_22627 Corylus avellana HOM05D002661 ORTHO05D002786 8.3e-14 81.3 195 41.0
Lalb_Chr14g0369851 Lupinus albus HOM05D002661 ORTHO05D002786 8.3e-14 81.3 196 37.8
Nitab4.5_0000337g0140 Nicotiana tabacum HOM05D002661 ORTHO05D002786 8.3e-14 81.3 199 38.2
Psat5g013240 Pisum sativum HOM05D002661 ORTHO05D002786 8.3e-14 81.3 205 37.6
Duzib093G0349 Durio zibethinus HOM05D002661 ORTHO05D002786 1.1e-13 80.9 197 40.6
Actinidia28594 Actinidia chinensis HOM05D002661 ORTHO05D002786 1.4e-13 80.5 189 39.2
Manes.05G148000 Manihot esculenta HOM05D002661 ORTHO05D002786 1.8e-13 80.1 195 39.5
Medtr3g113810 Medicago truncatula HOM05D002661 ORTHO05D002786 1.8e-13 80.1 207 37.7
Gohir.D05G258600 Gossypium hirsutum HOM05D002661 ORTHO05D002786 2.4e-13 79.7 217 35.9
Peaxi162Scf00400g00048 Petunia axillaris HOM05D002661 ORTHO05D002786 2.4e-13 79.7 196 38.8
Potri.002G023000 Populus trichocarpa HOM05D002661 ORTHO05D002786 3.2e-13 79.3 201 39.3
Lj4A25T51 Lonicera japonica HOM05D002661 ORTHO05D002786 5.4e-13 78.6 203 38.4
Prupe.1G366100 Prunus persica HOM05D002661 ORTHO05D002786 7.0e-13 78.2 208 38.0
Ca_15484_v3 Cicer arietinum L. HOM05D002661 ORTHO05D002786 1.2e-12 77.4 222 35.6
Thecc.08G043600 Theobroma cacao HOM05D002661 ORTHO05D002786 1.2e-12 77.4 198 38.9
MD08G1013500 Malus domestica HOM05D002661 ORTHO05D002786 1.6e-12 77.0 206 37.9
HanXRQChr14g0430361 Helianthus annuus HOM05D002661 ORTHO05D002786 2.0e-12 76.6 182 37.9
Nitab4.5_0010507g0010 Nicotiana tabacum HOM05D002661 ORTHO05D002786 2.7e-12 76.3 184 36.4
Oeu046268.1 Olea europaea HOM05D000745 ORTHO05D000641 2.7e-12 76.3 198 36.4
Peaxi162Scf00438g00717 Petunia axillaris HOM05D002661 ORTHO05D002786 2.7e-12 76.3 190 35.8
Potri.005G238500 Populus trichocarpa HOM05D002661 ORTHO05D002786 3.5e-12 75.9 218 36.2
TPR.G34544 Trifolium pratense HOM05D002661 ORTHO05D002786 4.6e-12 75.5 212 36.8
arahy.Tifrunner.gnm1.ann1.T25A5J Arachis hypogaea HOM05D002661 ORTHO05D002786 6.0e-12 75.1 206 36.4
FAN20G0494 Fragaria x ananassa HOM05D002661 ORTHO05D002786 1.7e-11 73.6 214 33.6
SalBow7G2684 Salvia bowleyana HOM05D002661 ORTHO05D002786 3.9e-11 72.4 179 34.6
Dinv31838 Davidia involucrata HOM05D002661 ORTHO05D002786 5.0e-11 72.0 193 37.3
arahy.Tifrunner.gnm1.ann1.TT5BBF Arachis hypogaea HOM05D002661 ORTHO05D002786 6.6e-11 71.6 207 38.2
Lalb_Chr11g0061941 Lupinus albus HOM05D002661 ORTHO05D002786 1.1e-10 70.9 191 35.6
CSS0015710 Camellia sinensis var. sinensis HOM05D002661 ORTHO05D002786 1.9e-10 70.1 202 35.6
Solyc04g081390.4 Solanum lycopersicum HOM05D002661 ORTHO05D002786 3.3e-10 69.3 185 34.1
Cc10_g01730 Coffea canephora HOM05D002661 ORTHO05D002786 5.6e-10 68.6 199 34.2
PGSC0003DMG400009934 Solanum tuberosum HOM05D002661 ORTHO05D002786 5.6e-10 68.6 185 34.1
Actinidia16982 Actinidia chinensis HOM05D002661 ORTHO05D002786 7.3e-10 68.2 169 34.3
CAN.G1735.2 Capsicum annuum HOM05D002661 ORTHO05D002786 7.3e-10 68.2 203 36.0
PGSC0003DMG400022533 Solanum tuberosum HOM05D002661 ORTHO05D002786 7.3e-10 68.2 205 35.1
Nitab4.5_0006119g0020 Nicotiana tabacum HOM05D002661 ORTHO05D002786 9.5e-10 67.8 202 33.7
SGA_v2.0_scaffold11G05914 Striga asiatica HOM05D002661 ORTHO05D002786 1.2e-09 67.4 202 36.1
Actinidia37931 Actinidia chinensis HOM05D002661 ORTHO05D002786 1.6e-09 67.0 190 34.2
EL10Ac1g02294 Beta vulgaris HOM05D002661 ORTHO05D002786 1.6e-09 67.0 215 31.2
Solyc03g033550.3 Solanum lycopersicum HOM05D002661 ORTHO05D002786 1.6e-09 67.0 205 34.6
CDE05G2590 Ceratophyllum demersum HOM05D002661 ORTHO05D002786 2.1e-09 66.6 203 34.0
AUR62033833 Chenopodium quinoa HOM05D002661 ORTHO05D002786 2.1e-09 66.6 204 33.3
Thecc.01G019200 Theobroma cacao HOM05D002661 ORTHO05D002786 2.1e-09 66.6 191 31.4
CANSAT25G0605 Cannabis sativa HOM05D002661 ORTHO05D002786 2.8e-09 66.2 230 33.9
Sopen03g006340 Solanum pennellii HOM05D002661 ORTHO05D002786 2.8e-09 66.2 205 34.6
SGA_v2.0_scaffold12G05967 Striga asiatica HOM05D002661 ORTHO05D002786 2.8e-09 66.2 210 32.4
MELO3C003756.2 Cucumis melo HOM05D002661 ORTHO05D002786 3.6e-09 65.9 194 34.0
MD15G1013000 Malus domestica HOM05D002661 ORTHO05D002786 3.6e-09 65.9 199 32.7
Oeu054697.1 Olea europaea HOM05D002661 ORTHO05D002786 4.7e-09 65.5 195 37.4
vmacro21919 Vaccinium macrocarpon HOM05D002661 ORTHO05D002786 4.7e-09 65.5 206 32.0
Peaxi162Scf00034g02717 Petunia axillaris HOM05D002661 ORTHO05D002786 6.2e-09 65.1 200 35.0
MSTRG.1199 Avicennia marina HOM05D002661 ORTHO05D002786 8.0e-09 64.7 193 36.8
Glyma.06G024700 Glycine max HOM05D002661 ORTHO05D002786 8.0e-09 64.7 208 36.1
MD02G1132800 Malus domestica HOM05D002661 ORTHO05D002786 8.0e-09 64.7 212 34.0
CiPaw.08G066000 Carya illinoinensis HOM05D002661 ORTHO05D002786 1.1e-08 64.3 211 35.1
Dinv40084 Davidia involucrata HOM05D002661 ORTHO05D002786 1.1e-08 64.3 192 33.3
Gohir.A06G004600 Gossypium hirsutum HOM05D002661 ORTHO05D002786 1.1e-08 64.3 199 38.2
Sed0015402 Sechium edule HOM05D002661 ORTHO05D002786 1.4e-08 63.9 187 37.4
A03p48200 Brassica napus HOM05D002661 ORTHO05D002786 1.8e-08 63.5 191 33.0
BraA03t13928Z Brassica rapa HOM05D002661 ORTHO05D002786 1.8e-08 63.5 191 33.0
COL.COLO4_21913 Corchorus olitorius HOM05D002661 ORTHO05D002786 1.8e-08 63.5 195 30.8
ClCG05G018310 Citrullus lanatus HOM05D002661 ORTHO05D002786 2.3e-08 63.2 200 34.5
Gohir.D06G000400 Gossypium hirsutum HOM05D002661 ORTHO05D002786 2.3e-08 63.2 199 38.2
Gorai.010G004800 Gossypium raimondii HOM05D002661 ORTHO05D002786 2.3e-08 63.2 199 38.2
PSO675G6292 Papaver somniferum HOM05D002661 ORTHO05D002786 3.1e-08 62.8 157 37.6
Cfa006970 Carpinus fangiana HOM05D002668 ORTHO05D003295 4.0e-08 62.4 194 30.9
SHI08071 Sapria himalayana HOM05D002661 ORTHO05D002786 4.0e-08 62.4 198 31.8
Actinidia15417 Actinidia chinensis HOM05D002661 ORTHO05D002786 6.8e-08 61.6 195 34.4
ATR0481G008 Amborella trichopoda HOM05D002661 ORTHO05D002786 6.8e-08 61.6 109 40.4
CiPaw.08G131700 Carya illinoinensis HOM05D002661 ORTHO05D002786 6.8e-08 61.6 201 31.8
Eucgr.I02352 Eucalyptus grandis HOM05D002661 ORTHO05D002786 6.8e-08 61.6 117 38.5
Glyma.04G024600 Glycine max HOM05D002661 ORTHO05D002786 6.8e-08 61.6 203 35.0
Nitab4.5_0003271g0010 Nicotiana tabacum HOM05D002661 ORTHO05D002786 6.8e-08 61.6 217 32.7
HPP92_022114 Vanilla planifolia HOM05D002661 ORTHO05D002786 6.8e-08 61.6 120 40.0
BolC7t45139H Brassica oleracea HOM05D002661 ORTHO05D002786 1.2e-07 60.8 200 32.5
CSS0007330 Camellia sinensis var. sinensis HOM05D002661 ORTHO05D002786 1.2e-07 60.8 199 34.7
AUR62035749 Chenopodium quinoa HOM05D002661 ORTHO05D002786 1.2e-07 60.8 199 34.2
VMungo1309G1856 Vigna mungo HOM05D002661 ORTHO05D002786 1.2e-07 60.8 205 34.6
Cpa.g.sc6.246 Carica papaya HOM05D002661 ORTHO05D002786 1.5e-07 60.5 203 31.0
Migut.C00825 Erythranthe guttata HOM05D002661 ORTHO05D002786 2.0e-07 60.1 218 32.1
GSVIVG01018786001 Vitis vinifera HOM05D002668 ORTHO05D003295 2.0e-07 60.1 127 42.5
CAN.G311.24 Capsicum annuum HOM05D002661 ORTHO05D002786 2.6e-07 59.7 137 39.4
FvH4_2g38540 Fragaria vesca HOM05D002661 ORTHO05D002786 2.6e-07 59.7 210 32.4
Sabra02G0018800 Salix brachista HOM05D002661 ORTHO05D002786 2.6e-07 59.7 198 35.4
Cfa013943 Carpinus fangiana HOM05D002661 ORTHO05D002786 3.4e-07 59.3 146 41.1
CDE05G2569 Ceratophyllum demersum HOM05D002661 ORTHO05D002786 3.4e-07 59.3 203 31.0
Hma1.2p1_0956F.1_g241350 Hydrangea macrophylla HOM05D002661 ORTHO05D002786 3.4e-07 59.3 97 43.3
Hma1.2p1_2239F.1_g317813 Hydrangea macrophylla HOM05D002661 ORTHO05D002786 3.4e-07 59.3 97 43.3
Peaxi162Scf00083g00420 Petunia axillaris HOM05D002661 ORTHO05D002786 3.4e-07 59.3 120 40.8
Peaxi162Scf00083g00513 Petunia axillaris HOM05D002661 ORTHO05D002786 3.4e-07 59.3 120 40.8
SalBow3G1681 Salvia bowleyana HOM05D002661 ORTHO05D002786 4.4e-07 58.9 94 43.6
DCAR_009925 Daucus carota HOM05D023667 ORTHO05D002786 5.8e-07 58.5 157 35.0
PSO541G3760 Papaver somniferum HOM05D002661 ORTHO05D002786 5.8e-07 58.5 217 31.8
Sopen04g035000 Solanum pennellii HOM05D002661 ORTHO05D002786 5.8e-07 58.5 118 36.4
Eucgr.F01646 Eucalyptus grandis HOM05D002661 ORTHO05D002786 7.5e-07 58.2 219 31.1
MD15G1245800 Malus domestica HOM05D002661 ORTHO05D002786 7.5e-07 58.2 208 33.7
Sc15g0005030 Simmondsia chinensis HOM05D002661 ORTHO05D002786 7.5e-07 58.2 210 31.9
CANSAT01G1513 Cannabis sativa HOM05D002661 ORTHO05D002786 9.8e-07 57.8 192 33.3
AUR62003372 Chenopodium quinoa HOM05D002661 ORTHO05D002786 1.3e-06 57.4 101 40.6
Eucgr.F00599 Eucalyptus grandis HOM05D002661 ORTHO05D002786 1.3e-06 57.4 207 31.4
BcaC06g33045 Brassica carinata HOM05D002661 ORTHO05D002786 1.7e-06 57.0 188 31.9
C08p26500 Brassica napus HOM05D002661 ORTHO05D002786 1.7e-06 57.0 109 41.3
BolC8t50264H Brassica oleracea HOM05D002661 ORTHO05D002786 1.7e-06 57.0 109 41.3
FAN15G3636 Fragaria x ananassa HOM05D002661 ORTHO05D002786 1.7e-06 57.0 205 31.2
FAN27G2774 Fragaria x ananassa HOM05D002661 ORTHO05D002786 1.7e-06 57.0 205 31.2
Lj2g0022128 Lotus japonicus HOM05D002661 ORTHO05D002786 2.2e-06 56.6 198 32.8
Sopen02g028700 Solanum pennellii HOM05D002661 ORTHO05D002786 2.2e-06 56.6 201 31.8
TWI56G0437 Tripterygium wilfordii HOM05D002661 ORTHO05D002786 2.2e-06 56.6 203 32.0
AUR62029460 Chenopodium quinoa HOM05D002661 ORTHO05D002786 2.9e-06 56.2 101 39.6
AT3G51220 Arabidopsis thaliana HOM05D002661 ORTHO05D002786 3.7e-06 55.8 181 33.1
MSTRG.2712 Avicennia marina HOM05D002661 ORTHO05D002786 3.7e-06 55.8 139 35.3
RcHm_v2.0_Chr6g0302771 Rosa chinensis HOM05D002661 ORTHO05D002786 3.7e-06 55.8 206 32.0
VMungo1215G1105 Vigna mungo HOM05D002661 ORTHO05D002786 3.7e-06 55.8 194 32.5
Cpa.g.sc26.35 Carica papaya HOM05D002661 ORTHO05D002786 4.9e-06 55.5 202 32.7
TWI36G0177 Tripterygium wilfordii HOM05D002661 ORTHO05D002786 4.9e-06 55.5 204 32.4
unitig_748.g7771 Utricularia gibba HOM05D002661 ORTHO05D002786 4.9e-06 55.5 182 33.5
BraA09t39886Z Brassica rapa HOM05D002661 ORTHO05D002786 6.4e-06 55.1 191 31.9
Carub.0005s1759 Capsella rubella HOM05D002661 ORTHO05D002786 6.4e-06 55.1 101 40.6
CARHR160800 Cardamine hirsuta HOM05D002661 ORTHO05D002786 8.3e-06 54.7 95 43.2
FvH4_1g11870 Fragaria vesca HOM05D002661 ORTHO05D002786 8.3e-06 54.7 203 33.0
FAN26G1121 Fragaria x ananassa HOM05D002661 ORTHO05D002786 8.3e-06 54.7 203 33.0
Psat2g154760 Pisum sativum HOM05D002661 ORTHO05D002786 8.3e-06 54.7 198 32.8
Prupe.7G167800 Prunus persica HOM05D002668 ORTHO05D003295 8.3e-06 54.7 94 41.5


User provided reference genes

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