Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24933 Brassica carinata HOM05D007166 ORTHO05D009039 2.1e-83 312.4 164 100.0
BraA02t07050Z Brassica rapa HOM05D007166 ORTHO05D009039 2.5e-44 182.6 142 69.7
BcaC03g15610 Brassica carinata HOM05D007166 ORTHO05D009039 9.5e-44 180.6 142 69.0
A02p20150 Brassica napus HOM05D007166 ORTHO05D009039 9.5e-44 180.6 142 69.0
C02p33780 Brassica napus HOM05D007166 ORTHO05D009039 9.5e-44 180.6 142 69.0
BolC2t09326H Brassica oleracea HOM05D007166 ORTHO05D009039 6.1e-43 177.9 142 68.3
AT1G75690 Arabidopsis thaliana HOM05D007166 ORTHO05D009039 2.0e-41 172.9 145 66.2
CARHR069090 Cardamine hirsuta HOM05D007166 ORTHO05D009039 3.7e-40 168.7 145 64.8
Sp5g30800 Schrenkiella parvula HOM05D007166 ORTHO05D009039 1.1e-39 167.2 148 64.2
Thhalv10019268m.g Eutrema salsugineum HOM05D007166 ORTHO05D009039 2.4e-39 166.0 148 64.2
AL2G35670 Arabidopsis lyrata HOM05D007166 ORTHO05D009039 4.1e-39 165.2 143 66.4
Carub.0002s2253 Capsella rubella HOM05D007166 ORTHO05D009039 5.4e-39 164.9 146 64.4
BcaC08g47053 Brassica carinata HOM05D007166 ORTHO05D009039 1.6e-38 163.3 149 63.1
BolC6t40002H Brassica oleracea HOM05D007166 ORTHO05D009039 1.6e-38 163.3 149 63.1
BraA07t31656Z Brassica rapa HOM05D007166 ORTHO05D009039 1.6e-38 163.3 149 63.1
A07p41210 Brassica napus HOM05D007166 ORTHO05D009039 3.0e-37 159.1 143 63.6
C06p49630 Brassica napus HOM05D007166 ORTHO05D009039 5.0e-37 158.3 148 62.8
Aa31LG4G5920 Aethionema arabicum HOM05D007166 ORTHO05D009039 4.3e-36 155.2 149 61.1
THA.LOC104813791 Tarenaya hassleriana HOM05D007166 ORTHO05D009039 4.9e-32 141.7 153 54.9
PGSC0003DMG400003776 Solanum tuberosum HOM05D007166 ORTHO05D009039 2.1e-30 136.3 136 54.4
Glyma.14G218200 Glycine max HOM05D007166 ORTHO05D009039 2.3e-29 132.9 139 54.7
MD08G1014000 Malus domestica HOM05D007166 ORTHO05D009039 8.6e-29 131.0 146 54.1
Duzib116G0210 Durio zibethinus HOM05D007166 ORTHO05D009039 1.1e-28 130.6 143 54.5
VMungo0647G2551 Vigna mungo HOM05D007166 ORTHO05D009039 1.1e-28 130.6 137 55.5
CiPaw.08G065500 Carya illinoinensis HOM05D007166 ORTHO05D009039 4.3e-28 128.6 143 53.1
ClCG05G018350 Citrullus lanatus HOM05D007166 ORTHO05D009039 7.3e-28 127.9 144 53.5
Dinv31833 Davidia involucrata HOM05D007166 ORTHO05D009039 7.3e-28 127.9 141 53.2
TWI56G1425 Tripterygium wilfordii HOM05D007166 ORTHO05D009039 7.3e-28 127.9 142 54.9
CAN.G311.15 Capsicum annuum HOM05D007166 ORTHO05D009039 9.5e-28 127.5 138 53.6
MELO3C003759.2 Cucumis melo HOM05D007166 ORTHO05D009039 9.5e-28 127.5 140 55.0
PGR031G2037 Punica granatum HOM05D007166 ORTHO05D009039 9.5e-28 127.5 142 52.1
Lalb_Chr22g0354371 Lupinus albus HOM05D007166 ORTHO05D009039 1.2e-27 127.1 138 52.2
GSVIVG01009888001 Vitis vinifera HOM05D007166 ORTHO05D009039 1.2e-27 127.1 143 52.4
CsaV3_3G045770 Cucumis sativus L. HOM05D007166 ORTHO05D009039 1.6e-27 126.7 140 54.3
Actinidia15414 Actinidia chinensis HOM05D007166 ORTHO05D009039 2.1e-27 126.3 144 50.0
FvH4_2g38630 Fragaria vesca HOM05D007166 ORTHO05D009039 2.1e-27 126.3 142 54.9
Thecc.08G042800 Theobroma cacao HOM05D007166 ORTHO05D009039 2.8e-27 125.9 143 51.7
COL.COLO4_26159 Corchorus olitorius HOM05D007166 ORTHO05D009039 3.6e-27 125.6 148 49.3
Phvul.001G007500 Phaseolus vulgaris HOM05D007166 ORTHO05D009039 3.6e-27 125.6 137 53.3
Glyma.17G257400 Glycine max HOM05D007166 ORTHO05D009039 4.7e-27 125.2 137 53.3
Gorai.010G005000 Gossypium raimondii HOM05D007166 ORTHO05D009039 4.7e-27 125.2 139 52.5
QL02p011380 Quercus lobata HOM05D007166 ORTHO05D009039 4.7e-27 125.2 144 51.4
Cc10_g01790 Coffea canephora HOM05D007166 ORTHO05D009039 6.2e-27 124.8 144 52.1
MD15G1013500 Malus domestica HOM05D007166 ORTHO05D009039 6.2e-27 124.8 147 53.1
Gohir.D06G000600 Gossypium hirsutum HOM05D007166 ORTHO05D009039 8.1e-27 124.4 139 52.5
Sed0018016 Sechium edule HOM05D007166 ORTHO05D009039 8.1e-27 124.4 148 48.6
Haze_22621 Corylus avellana HOM05D007166 ORTHO05D009039 2.3e-26 122.9 145 51.7
HanXRQChr05g0146521 Helianthus annuus HOM05D007166 ORTHO05D009039 2.3e-26 122.9 145 51.0
Nn5g29333 Nelumbo nucifera HOM05D007166 ORTHO05D009039 2.3e-26 122.9 115 60.0
RcHm_v2.0_Chr6g0302691 Rosa chinensis HOM05D007166 ORTHO05D009039 2.3e-26 122.9 142 52.8
Eucgr.F00601 Eucalyptus grandis HOM05D007166 ORTHO05D009039 4.0e-26 122.1 144 50.0
Potri.002G023600 Populus trichocarpa HOM05D007166 ORTHO05D009039 4.0e-26 122.1 145 51.0
Prupe.1G367000 Prunus persica HOM05D007166 ORTHO05D009039 4.0e-26 122.1 147 51.7
Gohir.A06G004800 Gossypium hirsutum HOM05D007166 ORTHO05D009039 5.2e-26 121.7 139 51.1
Lsat_1_v5_gn_9_46261 Lactuca sativa HOM05D007166 ORTHO05D009039 8.9e-26 120.9 140 50.7
Rhsim06G0022200 Rhododendron simsii HOM05D007166 ORTHO05D009039 8.9e-26 120.9 132 49.2
CSS0019896 Camellia sinensis var. sinensis HOM05D007166 ORTHO05D009039 1.2e-25 120.6 138 53.6
Medtr1g024840 Medicago truncatula HOM05D007166 ORTHO05D009039 1.2e-25 120.6 147 49.7
Migut.C00807 Erythranthe guttata HOM05D007166 ORTHO05D009039 1.5e-25 120.2 141 50.4
Os03g0244000 Oryza sativa ssp. japonica HOM05D007166 ORTHO05D009039 1.5e-25 120.2 117 54.7
Manes.18G014600 Manihot esculenta HOM05D007166 ORTHO05D009039 2.6e-25 119.4 121 55.4
TAR628G0810 Trochodendron aralioides HOM05D007166 ORTHO05D009039 2.6e-25 119.4 138 52.2
Lj4A797T62 Lonicera japonica HOM05D007166 ORTHO05D009039 3.4e-25 119.0 136 51.5
PSO170G1901 Papaver somniferum HOM05D007166 ORTHO05D009039 3.4e-25 119.0 133 50.4
Sabra02G0019200 Salix brachista HOM05D007166 ORTHO05D009039 3.4e-25 119.0 145 49.7
Duzib093G1587 Durio zibethinus HOM05D007166 ORTHO05D009039 4.4e-25 118.6 138 49.3
TPR.G34359 Trifolium pratense HOM05D007166 ORTHO05D009039 4.4e-25 118.6 150 48.0
Atru.chr13.311 Acer truncatum HOM05D007166 ORTHO05D009039 5.8e-25 118.2 147 48.3
CANSAT25G3739 Cannabis sativa HOM05D007166 ORTHO05D009039 5.8e-25 118.2 113 58.4
Peaxi162Scf00438g00619 Petunia axillaris HOM05D007166 ORTHO05D009039 5.8e-25 118.2 143 47.6
Solyc04g081320.4 Solanum lycopersicum HOM05D007166 ORTHO05D009039 5.8e-25 118.2 108 59.3
MSTRG.1201 Avicennia marina HOM05D007166 ORTHO05D009039 7.5e-25 117.9 139 48.9
arahy.Tifrunner.gnm1.ann1.74SAHL Arachis hypogaea HOM05D007166 ORTHO05D009039 9.9e-25 117.5 103 60.2
Potri.005G237800 Populus trichocarpa HOM05D007166 ORTHO05D009039 9.9e-25 117.5 146 48.6
Sopen04g034940 Solanum pennellii HOM05D007166 ORTHO05D009039 1.3e-24 117.1 108 58.3
unitig_46.g17964 Utricularia gibba HOM05D007166 ORTHO05D009039 1.3e-24 117.1 113 55.8
Oeu007334.1 Olea europaea HOM05D007166 ORTHO05D009039 1.7e-24 116.7 146 46.6
ECA232G5036 Erigeron canadensis HOM05D007166 ORTHO05D009039 2.2e-24 116.3 103 58.3
FAN20G1945 Fragaria x ananassa HOM05D007166 ORTHO05D009039 2.2e-24 116.3 153 50.3
PSO700G0103 Papaver somniferum HOM05D007166 ORTHO05D009039 4.9e-24 115.2 119 52.9
SGA_v2.0_scaffold92G28245 Striga asiatica HOM05D007166 ORTHO05D009039 4.9e-24 115.2 113 55.8
Cfa013938 Carpinus fangiana HOM05D007166 ORTHO05D009039 1.1e-23 114.0 171 44.4
AUR62037091 Chenopodium quinoa HOM05D007166 ORTHO05D009039 1.1e-23 114.0 167 43.1
DCAR_017474 Daucus carota HOM05D007166 ORTHO05D009039 1.1e-23 114.0 151 47.7
Zm00001eb081060 Zea mays HOM05D007166 ORTHO05D009039 4.1e-23 112.1 144 47.2
Cpa.g.sc1059.4 Carica papaya HOM05D007166 ORTHO05D009039 5.4e-23 111.7 97 62.9
Ciclev10002412m.g Citrus clementina HOM05D007166 ORTHO05D009039 2.1e-22 109.8 161 44.1
HPP92_015209 Vanilla planifolia HOM05D007166 ORTHO05D009039 3.5e-22 109.0 105 57.1
FAN15G1492 Fragaria x ananassa HOM05D007166 ORTHO05D009039 7.8e-22 107.8 181 43.6
Lj5g0017261 Lotus japonicus HOM05D007166 ORTHO05D009039 5.1e-21 105.1 177 40.7
CDE02G4515 Ceratophyllum demersum HOM05D007166 ORTHO05D009039 1.5e-20 103.6 107 54.2
AagrBONN_evm.TU.Sc2ySwM_369.321 Anthoceros agrestis HOM05D007166 ORTHO05D009039 1.6e-19 100.1 102 49.0
EL10Ac5g11627 Beta vulgaris HOM05D007166 ORTHO05D009039 1.6e-19 100.1 113 52.2
CDE02G3586 Ceratophyllum demersum HOM05D007166 ORTHO05D009039 2.1e-19 99.8 92 58.7
Pp3c22_16100 Physcomitrium patens HOM05D007166 ORTHO05D009039 1.8e-18 96.7 100 47.0
Pp3s104_40 Physcomitrium patens HOM05D007166 ORTHO05D009039 2.4e-18 96.3 100 47.0
HPP92_015221 Vanilla planifolia HOM05D007166 ORTHO05D009039 3.1e-18 95.9 56 80.4
Mapoly0005s0157 Marchantia polymorpha HOM05D007166 ORTHO05D009039 4.0e-18 95.5 108 46.3
Nitab4.5_0001540g0050 Nicotiana tabacum HOM05D007166 ORTHO05D009039 5.8e-17 91.7 168 39.3
Aqoxy5G01769 Aquilegia oxysepala HOM05D007166 ORTHO05D009039 4.9e-16 88.6 90 50.0
SMO165G0060 Selaginella moellendorffii HOM05D007166 ORTHO05D009039 4.2e-15 85.5 100 44.0
AUR62036485 Chenopodium quinoa HOM05D007166 ORTHO05D009039 5.1e-13 78.6 113 44.2
CBR_g44435 Chara braunii HOM05D007166 ORTHO05D009039 1.9e-12 76.6 112 39.3
Hund05201 Selenicereus undatus HOM05D007166 ORTHO05D009039 2.8e-11 72.8 55 67.3
Thecc.09G255600 Theobroma cacao HOM05D007166 ORTHO05D009039 7.6e-09 64.7 99 43.4
arahy.Tifrunner.gnm1.ann1.MS74EG Arachis hypogaea HOM05D007166 ORTHO05D009039 1.9e-07 60.1 135 34.1
MBI09_g08444_MAGBIO Magnolia biondii HOM05D007166 ORTHO05D009039 1.9e-07 60.1 96 38.5
ATR0912G003 Amborella trichopoda HOM05D007166 ORTHO05D009039 3.5e-06 55.8 46 56.5


User provided reference genes

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