Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24920 Brassica carinata HOM05D008022 ORTHO05D010147 2.2e-59 232.6 173 100.0
BraA02t07039Z Brassica rapa HOM05D008022 ORTHO05D010147 1.9e-50 203.0 176 87.5
BolC2t09304H Brassica oleracea HOM05D008022 ORTHO05D010147 1.2e-49 200.3 174 87.9
A02p20010 Brassica napus HOM05D008022 ORTHO05D010147 2.7e-49 199.1 183 84.7
C02p34060 Brassica napus HOM05D008022 ORTHO05D010147 7.2e-42 174.5 178 83.1
C06p49540 Brassica napus HOM05D008022 ORTHO05D010147 1.8e-40 169.9 176 75.0
BolC6t39993H Brassica oleracea HOM05D008022 ORTHO05D010147 1.8e-40 169.9 176 75.0
BraA07t31648Z Brassica rapa HOM05D008022 ORTHO05D010147 2.0e-39 166.4 176 75.6
BcaC08g47337 Brassica carinata HOM05D008022 ORTHO05D010147 4.3e-39 165.2 176 75.0
CARHR068950 Cardamine hirsuta HOM05D008022 ORTHO05D010147 1.3e-38 163.7 176 77.8
A07p41120 Brassica napus HOM05D008022 ORTHO05D010147 1.7e-38 163.3 176 74.4
BcaC08g47037 Brassica carinata HOM05D008022 ORTHO05D010147 1.1e-37 160.6 176 69.3
AL2G35530 Arabidopsis lyrata HOM05D008022 ORTHO05D010147 1.7e-35 153.3 175 80.6
Carub.0002s2241 Capsella rubella HOM05D008022 ORTHO05D010147 4.5e-28 128.6 180 71.1
BcaC08g47338 Brassica carinata HOM05D008022 ORTHO05D010147 2.3e-24 116.3 65 80.0
BcaC08g45567 Brassica carinata HOM05D008022 ORTHO05D010147 1.5e-23 113.6 173 59.5
C06p32520 Brassica napus HOM05D008022 ORTHO05D010147 1.5e-23 113.6 173 59.5
BolC6t38374H Brassica oleracea HOM05D008022 ORTHO05D010147 1.5e-23 113.6 173 59.5
AT1G75550 Arabidopsis thaliana HOM05D008022 ORTHO05D010147 6.3e-22 108.2 155 76.1
BraA07t30517Z Brassica rapa HOM05D008022 ORTHO05D010147 1.1e-21 107.5 173 60.1
EL10Ac1g00558 Beta vulgaris HOM05D008022 ORTHO05D010147 1.8e-13 80.1 49 63.3
Cpa.g.sc140.17 Carica papaya HOM05D008022 ORTHO05D010147 1.2e-12 77.4 69 63.8
ECA236G3926 Erigeron canadensis HOM05D008022 ORTHO05D010147 4.5e-12 75.5 48 58.3
CANSAT25G1466 Cannabis sativa HOM05D008022 ORTHO05D010147 2.2e-11 73.2 47 55.3
MD15G1017600 Malus domestica HOM05D008022 ORTHO05D010147 2.9e-11 72.8 45 62.2
Potri.005G234601 Populus trichocarpa HOM05D008022 ORTHO05D010147 2.9e-11 72.8 40 67.5
TWI12G0111 Tripterygium wilfordii HOM05D008022 ORTHO05D010147 2.9e-11 72.8 45 62.2
CiPaw.08G062600 Carya illinoinensis HOM05D008022 ORTHO05D010147 3.8e-11 72.4 45 60.0
Eucgr.F01845 Eucalyptus grandis HOM05D008022 ORTHO05D010147 3.8e-11 72.4 46 60.9
VMungo1309G0619 Vigna mungo HOM05D002906 ORTHO05D003211 5.0e-11 72.0 45 64.4
Atru.chr13.362 Acer truncatum HOM05D008022 ORTHO05D010147 1.1e-10 70.9 74 48.6
CSS0048901 Camellia sinensis var. sinensis HOM05D008022 ORTHO05D010147 1.1e-10 70.9 40 65.0
Lsat_1_v5_gn_7_91921 Lactuca sativa HOM05D008022 ORTHO05D010147 1.1e-10 70.9 47 57.4
Nitab4.5_0000493g0010 Nicotiana tabacum HOM05D008022 ORTHO05D010147 1.1e-10 70.9 40 65.0
Lalb_Chr08g0246011 Lupinus albus HOM05D008022 ORTHO05D010147 2.5e-10 69.7 48 58.3
Manes.05G152650 Manihot esculenta HOM05D008022 ORTHO05D010147 2.5e-10 69.7 50 58.0
CsaV3_7G006070 Cucumis sativus L. HOM05D008022 ORTHO05D010147 4.2e-10 68.9 40 62.5
FvH4_2g39010 Fragaria vesca HOM05D008022 ORTHO05D010147 4.2e-10 68.9 40 65.0
Phvul.001G009600 Phaseolus vulgaris HOM05D008022 ORTHO05D010147 5.5e-10 68.6 40 62.5
arahy.Tifrunner.gnm1.ann1.QUSF5W Arachis hypogaea HOM05D008022 ORTHO05D010147 7.2e-10 68.2 40 65.0
arahy.Tifrunner.gnm1.ann1.RV6KDM Arachis hypogaea HOM05D008022 ORTHO05D010147 9.4e-10 67.8 49 55.1
Cc10_g02120 Coffea canephora HOM05D008022 ORTHO05D010147 9.4e-10 67.8 41 63.4
PGR031G0261 Punica granatum HOM05D008022 ORTHO05D010147 9.4e-10 67.8 49 55.1
Lalb_Chr22g0354471 Lupinus albus HOM05D008022 ORTHO05D010147 1.6e-09 67.0 45 53.3
Duzib041G0305 Durio zibethinus HOM05D008022 ORTHO05D010147 2.1e-09 66.6 40 62.5
CiPaw.07G154400 Carya illinoinensis HOM05D008022 ORTHO05D010147 2.7e-09 66.2 39 61.5
Lj5g0000972 Lotus japonicus HOM05D008022 ORTHO05D010147 2.7e-09 66.2 40 60.0
Medtr1g023270 Medicago truncatula HOM05D008022 ORTHO05D010147 2.7e-09 66.2 45 55.6
Psat6g005360 Pisum sativum HOM05D008022 ORTHO05D010147 2.7e-09 66.2 45 55.6
Sed0002960 Sechium edule HOM05D008022 ORTHO05D010147 2.7e-09 66.2 48 50.0
Lj1g0009874 Lotus japonicus HOM05D008022 ORTHO05D010147 3.6e-09 65.9 45 51.1
TPR.G40293 Trifolium pratense HOM05D008022 ORTHO05D010147 3.6e-09 65.9 47 51.1
Glyma.14G216600 Glycine max HOM05D008022 ORTHO05D010147 4.7e-09 65.5 40 60.0
Gohir.A05G188500 Gossypium hirsutum HOM05D008022 ORTHO05D010147 4.7e-09 65.5 40 60.0
Gohir.D05G191600 Gossypium hirsutum HOM05D008022 ORTHO05D010147 4.7e-09 65.5 40 60.0
Medtr3g113080 Medicago truncatula HOM05D008022 ORTHO05D010147 4.7e-09 65.5 45 51.1
Glyma.17G255200 Glycine max HOM05D008022 ORTHO05D010147 8.0e-09 64.7 39 61.5
Gorai.009G196900 Gossypium raimondii HOM05D008022 ORTHO05D010147 8.0e-09 64.7 40 60.0
Nn5g29204 Nelumbo nucifera HOM05D008022 ORTHO05D010147 2.3e-08 63.2 40 60.0
Aqoxy6G02393 Aquilegia oxysepala HOM05D008022 ORTHO05D010147 4.0e-08 62.4 41 63.4
Cfa013902 Carpinus fangiana HOM05D002906 ORTHO05D003211 4.0e-08 62.4 41 58.5
arahy.Tifrunner.gnm1.ann1.0AGT2R Arachis hypogaea HOM05D008022 ORTHO05D010147 8.8e-08 61.2 37 59.5
PSO541G2481 Papaver somniferum HOM05D008022 ORTHO05D010147 1.5e-07 60.5 41 61.0
Sp5g30680 Schrenkiella parvula HOM05D008022 ORTHO05D010147 3.4e-07 59.3 36 86.1
HPP92_017807 Vanilla planifolia HOM05D008022 ORTHO05D010147 7.5e-07 58.2 38 57.9
MELO3C018685.2 Cucumis melo HOM05D008022 ORTHO05D010147 2.8e-06 56.2 40 55.0
FAN27G1447 Fragaria x ananassa HOM05D008022 ORTHO05D010147 6.3e-06 55.1 30 66.7


User provided reference genes

Program Settings