Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24885 Brassica carinata HOM05D007077 ORTHO05D008853 1.4e-59 232.6 106 100.0
Sp5g30250 Schrenkiella parvula HOM05D007077 ORTHO05D008853 1.4e-51 206.1 102 89.2
AT1G75125 Arabidopsis thaliana HOM05D007077 ORTHO05D008853 2.4e-48 195.3 102 83.3
BcaB02g06994 Brassica carinata HOM05D007077 ORTHO05D008853 2.4e-48 195.3 102 85.3
C06p32830 Brassica napus HOM05D007077 ORTHO05D008853 2.4e-48 195.3 102 85.3
BolC6t38404H Brassica oleracea HOM05D007077 ORTHO05D008853 1.6e-47 192.6 102 83.3
AL2G35020 Arabidopsis lyrata HOM05D007077 ORTHO05D008853 4.5e-47 191.0 102 81.4
Thhalv10019349m.g Eutrema salsugineum HOM05D007077 ORTHO05D008853 5.9e-47 190.7 102 82.4
Carub.0002s2191 Capsella rubella HOM05D007077 ORTHO05D008853 7.7e-47 190.3 102 79.4
BcaB02g07008 Brassica carinata HOM05D007077 ORTHO05D008853 1.0e-46 189.9 103 84.5
Aa31LG4G5320 Aethionema arabicum HOM05D007077 ORTHO05D008853 6.5e-46 187.2 103 80.6
A02p19700 Brassica napus HOM05D007077 ORTHO05D008853 6.5e-46 187.2 107 81.3
A07p29070 Brassica napus HOM05D007077 ORTHO05D008853 6.5e-46 187.2 102 81.4
BraA02t07006Z Brassica rapa HOM05D007077 ORTHO05D008853 6.5e-46 187.2 107 81.3
BcaC03g15541 Brassica carinata HOM05D007077 ORTHO05D008853 8.5e-46 186.8 102 83.3
BolC2t09261H Brassica oleracea HOM05D007077 ORTHO05D008853 8.5e-46 186.8 102 83.3
CARHR068440 Cardamine hirsuta HOM05D007077 ORTHO05D008853 1.1e-45 186.4 102 77.5
BraA07t30546Z Brassica rapa HOM05D007077 ORTHO05D008853 4.0e-43 177.9 102 79.4
CARHR068450 Cardamine hirsuta HOM05D007077 ORTHO05D008853 1.2e-42 176.4 102 77.5
THA.LOC104826537 Tarenaya hassleriana HOM05D007077 ORTHO05D008853 7.5e-42 173.7 100 74.0
RcHm_v2.0_Chr2g0089201 Rosa chinensis HOM05D007077 ORTHO05D008853 1.0e-38 163.3 100 67.0
CiPaw.03G240800 Carya illinoinensis HOM05D007077 ORTHO05D008853 2.3e-38 162.2 100 70.0
COL.COLO4_35188 Corchorus olitorius HOM05D007077 ORTHO05D008853 2.3e-38 162.2 100 69.0
FvH4_1g03790 Fragaria vesca HOM05D007077 ORTHO05D008853 5.0e-38 161.0 100 67.0
FAN19G1922 Fragaria x ananassa HOM05D007077 ORTHO05D008853 5.0e-38 161.0 100 67.0
FAN23G2971 Fragaria x ananassa HOM05D007077 ORTHO05D008853 5.0e-38 161.0 100 67.0
FAN26G2340 Fragaria x ananassa HOM05D007077 ORTHO05D008853 5.0e-38 161.0 100 67.0
Duzib168G0686 Durio zibethinus HOM05D007077 ORTHO05D008853 1.5e-37 159.5 100 66.0
Thecc.09G122000 Theobroma cacao HOM05D007077 ORTHO05D008853 2.5e-37 158.7 100 65.0
Duzib150G1251 Durio zibethinus HOM05D007077 ORTHO05D008853 4.3e-37 157.9 100 66.0
COL.COLO4_05999 Corchorus olitorius HOM05D007077 ORTHO05D008853 9.5e-37 156.8 100 65.0
Cpa.g.sc75.76 Carica papaya HOM05D007077 ORTHO05D008853 1.6e-36 156.0 92 71.7
Prupe.7G238900 Prunus persica HOM05D007077 ORTHO05D008853 1.6e-36 156.0 100 66.0
Gohir.A05G018500 Gossypium hirsutum HOM05D007077 ORTHO05D008853 2.1e-36 155.6 97 66.0
Gohir.D05G019400 Gossypium hirsutum HOM05D007077 ORTHO05D008853 2.1e-36 155.6 97 66.0
Gorai.009G019800 Gossypium raimondii HOM05D007077 ORTHO05D008853 2.1e-36 155.6 97 66.0
TWI63G0911 Tripterygium wilfordii HOM05D007077 ORTHO05D008853 2.1e-36 155.6 99 64.6
Eucgr.C04175 Eucalyptus grandis HOM05D007077 ORTHO05D008853 4.7e-36 154.5 100 65.0
Potri.003G137900 Populus trichocarpa HOM05D007077 ORTHO05D008853 1.0e-35 153.3 100 64.0
MD02G1036500 Malus domestica HOM05D007077 ORTHO05D008853 1.4e-35 152.9 98 66.3
Manes.06G053400 Manihot esculenta HOM05D007077 ORTHO05D008853 1.4e-35 152.9 100 64.0
Actinidia07437 Actinidia chinensis HOM05D007077 ORTHO05D008853 2.3e-35 152.1 102 62.7
arahy.Tifrunner.gnm1.ann1.7ZPA8Y Arachis hypogaea HOM05D007077 ORTHO05D008853 5.2e-35 151.0 99 63.6
arahy.Tifrunner.gnm1.ann1.BTXG8Q Arachis hypogaea HOM05D007077 ORTHO05D008853 5.2e-35 151.0 99 63.6
Sabra03G0099300 Salix brachista HOM05D007077 ORTHO05D008853 8.9e-35 150.2 100 64.0
QL02p087620 Quercus lobata HOM05D007077 ORTHO05D008853 1.2e-34 149.8 100 64.0
Atru.chr7.1226 Acer truncatum HOM05D007077 ORTHO05D008853 2.6e-34 148.7 98 66.3
Psat4g041880 Pisum sativum HOM05D007077 ORTHO05D008853 4.4e-34 147.9 100 64.0
Lj4g0023379 Lotus japonicus HOM05D007077 ORTHO05D008853 5.7e-34 147.5 93 68.8
GSVIVG01035379001 Vitis vinifera HOM05D007077 ORTHO05D008853 1.3e-33 146.4 100 60.0
Medtr4g113750 Medicago truncatula HOM05D007077 ORTHO05D008853 3.2e-32 141.7 92 67.4
Lalb_Chr07g0178761 Lupinus albus HOM05D007077 ORTHO05D008853 5.4e-32 141.0 92 65.2
Rhsim03G0246400 Rhododendron simsii HOM05D007077 ORTHO05D008853 7.0e-32 140.6 102 57.8
Glyma.17G117400 Glycine max HOM05D007077 ORTHO05D008853 1.2e-31 139.8 103 57.3
TPR.G10683 Trifolium pratense HOM05D007077 ORTHO05D008853 1.2e-31 139.8 99 60.6
CSS0046716 Camellia sinensis var. sinensis HOM05D007077 ORTHO05D008853 1.6e-31 139.4 101 55.4
vmacro06174 Vaccinium macrocarpon HOM05D007077 ORTHO05D008853 3.5e-31 138.3 100 58.0
Glyma.05G009400 Glycine max HOM05D007077 ORTHO05D008853 4.6e-31 137.9 103 57.3
MBI04_g10421_MAGBIO Magnolia biondii HOM05D007077 ORTHO05D008853 5.9e-31 137.5 100 58.0
Dinv36561 Davidia involucrata HOM05D007077 ORTHO05D008853 7.8e-31 137.1 100 59.0
Phvul.003G161700 Phaseolus vulgaris HOM05D007077 ORTHO05D008853 7.8e-31 137.1 103 56.3
CSS0033721 Camellia sinensis var. sinensis HOM05D007077 ORTHO05D008853 1.0e-30 136.7 91 60.4
TAR636G1135 Trochodendron aralioides HOM05D007077 ORTHO05D008853 1.0e-30 136.7 99 54.5
VMungo1215G0506 Vigna mungo HOM05D007077 ORTHO05D008853 1.0e-30 136.7 99 59.6
Sed0015086 Sechium edule HOM05D007077 ORTHO05D008853 1.3e-30 136.3 92 64.1
Phvul.003G162000 Phaseolus vulgaris HOM05D007077 ORTHO05D008853 3.0e-30 135.2 99 57.6
Nitab4.5_0000167g0170 Nicotiana tabacum HOM05D007077 ORTHO05D008853 3.9e-30 134.8 99 59.6
Ciclev10010021m.g Citrus clementina HOM05D007077 ORTHO05D008853 2.5e-29 132.1 91 64.8
Peaxi162Scf01013g00228 Petunia axillaris HOM05D007077 ORTHO05D008853 2.5e-29 132.1 99 59.6
Actinidia26405 Actinidia chinensis HOM05D007077 ORTHO05D008853 3.6e-28 128.3 83 65.1
PGR102G1835 Punica granatum HOM05D007077 ORTHO05D008853 4.7e-28 127.9 65 78.5
Pp3c10_2110 Physcomitrium patens HOM05D007077 ORTHO05D008853 2.3e-27 125.6 99 51.5
Mapoly0015s0040 Marchantia polymorpha HOM05D007077 ORTHO05D008853 8.9e-27 123.6 98 53.1
CAN.G307.7 Capsicum annuum HOM05D007077 ORTHO05D008853 1.2e-26 123.2 98 56.1
CsaV3_2G002680 Cucumis sativus L. HOM05D007077 ORTHO05D008853 1.5e-26 122.9 98 53.1
Os01g0612800 Oryza sativa ssp. japonica HOM05D007077 ORTHO05D008853 2.0e-26 122.5 86 57.0
Haze_25634 Corylus avellana HOM05D007077 ORTHO05D008853 7.5e-26 120.6 87 60.9
Hma1.2p1_0665F.1_g199210 Hydrangea macrophylla HOM05D007077 ORTHO05D008853 1.7e-25 119.4 61 77.0
Hund09149 Selenicereus undatus HOM05D007077 ORTHO05D008853 1.7e-25 119.4 97 51.5
Sopen03g004510 Solanum pennellii HOM05D007077 ORTHO05D008853 1.7e-25 119.4 99 52.5
QL02p031889 Quercus lobata HOM05D007077 ORTHO05D008853 2.9e-25 118.6 98 57.1
QL93p2004_0148 Quercus lobata HOM05D007077 ORTHO05D008853 2.9e-25 118.6 98 57.1
CDE06G0710 Ceratophyllum demersum HOM05D007077 ORTHO05D008853 4.9e-25 117.9 100 52.0
Ah.05g167190 Amaranthus hybridus HOM05D007077 ORTHO05D008853 2.4e-24 115.5 100 53.0
Solyc03g025690.4 Solanum lycopersicum HOM05D007077 ORTHO05D008853 2.4e-24 115.5 99 52.5
QL05p072824 Quercus lobata HOM05D003311 ORTHO05D008853 3.2e-24 115.2 88 56.8
Manes.14G129700 Manihot esculenta HOM05D007077 ORTHO05D008853 5.4e-24 114.4 88 53.4
AagrBONN_evm.TU.Sc2ySwM_368.923 Anthoceros agrestis HOM05D007077 ORTHO05D008853 7.0e-24 114.0 99 47.5
MSTRG.10653 Avicennia marina HOM05D007077 ORTHO05D008853 7.0e-24 114.0 101 53.5
Oeu055966.1 Olea europaea HOM05D007077 ORTHO05D008853 9.2e-24 113.6 102 57.8
CDE07G1647 Ceratophyllum demersum HOM05D007077 ORTHO05D008853 3.5e-23 111.7 80 62.5
SalBow6G6978 Salvia bowleyana HOM05D007077 ORTHO05D008853 3.5e-23 111.7 100 48.0
Sed0025696 Sechium edule HOM05D007077 ORTHO05D008853 4.6e-23 111.3 87 52.9
ClCG11G002840 Citrullus lanatus HOM05D007077 ORTHO05D008853 1.3e-22 109.8 117 45.3
Lsat_1_v5_gn_5_98981 Lactuca sativa HOM05D007077 ORTHO05D008853 1.3e-22 109.8 97 51.5
HanXRQChr01g0017151 Helianthus annuus HOM05D007077 ORTHO05D008853 1.7e-22 109.4 107 47.7
SMO137G0334 Selaginella moellendorffii HOM05D007077 ORTHO05D008853 3.0e-22 108.6 87 51.7
SGA_v2.0_scaffold51G18726 Striga asiatica HOM05D007077 ORTHO05D008853 3.0e-22 108.6 92 52.2
Migut.K00414 Erythranthe guttata HOM05D007077 ORTHO05D008853 1.1e-21 106.7 97 48.5
CDE07G0486 Ceratophyllum demersum HOM05D007077 ORTHO05D008853 1.5e-21 106.3 65 70.8
Cc09_g03400 Coffea canephora HOM05D007077 ORTHO05D008853 5.6e-21 104.4 62 66.1
EL10Ac8g18603 Beta vulgaris HOM05D007077 ORTHO05D008853 1.2e-20 103.2 74 56.8
Nitab4.5_0001579g0110 Nicotiana tabacum HOM05D007077 ORTHO05D008853 2.8e-20 102.1 103 46.6
HanXRQChr12g0356451 Helianthus annuus HOM05D007077 ORTHO05D008853 6.2e-20 100.9 111 43.2
C02p32320 Brassica napus HOM05D007077 ORTHO05D008853 5.2e-19 97.8 49 83.7
GSVIVG01015495001 Vitis vinifera HOM05D007077 ORTHO05D008853 5.2e-19 97.8 48 81.2
PGSC0003DMG400014298 Solanum tuberosum HOM05D007077 ORTHO05D008853 2.6e-18 95.5 86 50.0
MELO3C031577.2 Cucumis melo HOM05D007077 ORTHO05D008853 9.5e-13 77.0 87 40.2
CBR_g10839 Chara braunii HOM05D001161 ORTHO05D000497 4.1e-08 61.6 93 33.3


User provided reference genes

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