Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24843 Brassica carinata HOM05D006637 ORTHO05D001736 3.7e-152 541.6 286 100.0
A02p19190 Brassica napus HOM05D006637 ORTHO05D001736 4.0e-106 388.7 293 77.1
BcaC03g15494 Brassica carinata HOM05D006637 ORTHO05D001736 5.2e-106 388.3 293 77.1
BolC2t09205H Brassica oleracea HOM05D006637 ORTHO05D001736 3.2e-103 379.0 296 77.7
C02p31780 Brassica napus HOM05D006637 ORTHO05D001736 2.1e-102 376.3 293 77.5
BraA02t06967Z Brassica rapa HOM05D006637 ORTHO05D001736 1.9e-100 369.8 291 76.3
Sp5g29400 Schrenkiella parvula HOM05D006637 ORTHO05D001736 4.7e-99 365.2 328 69.2
BcaC08g45599 Brassica carinata HOM05D006637 ORTHO05D001736 4.1e-95 352.1 304 71.7
BolC6t38463H Brassica oleracea HOM05D006637 ORTHO05D001736 5.1e-93 345.1 304 70.1
Carub.0002s2101 Capsella rubella HOM05D006637 ORTHO05D001736 2.1e-91 339.7 325 64.9
AL2G34100 Arabidopsis lyrata HOM05D006637 ORTHO05D001736 1.8e-90 336.7 328 64.6
BraA07t30588Z Brassica rapa HOM05D006637 ORTHO05D001736 5.2e-90 335.1 306 69.6
CARHR067480 Cardamine hirsuta HOM05D006637 ORTHO05D001736 5.2e-90 335.1 318 67.3
AT1G74220 Arabidopsis thaliana HOM05D006637 ORTHO05D001736 9.9e-89 330.9 319 66.5
BcaC03g15490 Brassica carinata HOM05D006637 ORTHO05D001736 6.9e-82 308.1 272 69.5
BraA07t31550Z Brassica rapa HOM05D006637 ORTHO05D001736 6.9e-82 308.1 312 64.1
C06p33490 Brassica napus HOM05D000311 ORTHO05D000183 5.4e-79 298.5 246 74.4
A07p29500 Brassica napus HOM05D000311 ORTHO05D000183 3.5e-78 295.8 247 74.5
C06p48410 Brassica napus HOM05D006637 ORTHO05D001736 7.9e-78 294.7 317 62.1
A07p40060 Brassica napus HOM05D006637 ORTHO05D001736 3.0e-77 292.7 310 62.6
Thhalv10018880m.g Eutrema salsugineum HOM05D006637 ORTHO05D001736 1.6e-75 287.0 325 59.7
BcaC08g46854 Brassica carinata HOM05D006637 ORTHO05D001736 1.6e-67 260.4 257 64.2
BolC6t39870H Brassica oleracea HOM05D006637 ORTHO05D001736 4.5e-65 252.3 317 56.8
Aa31LG4G4510 Aethionema arabicum HOM05D006637 ORTHO05D001736 6.7e-61 238.4 256 57.4
THA.LOC104808038 Tarenaya hassleriana HOM05D006637 ORTHO05D001736 9.1e-42 174.9 265 46.0
BcaB05g24564 Brassica carinata HOM05D006637 ORTHO05D001736 1.4e-39 167.5 126 77.8
Cpa.g.sc10.158 Carica papaya HOM05D006637 ORTHO05D001736 1.0e-16 91.7 256 34.4
Lalb_Chr13g0302841 Lupinus albus HOM05D006637 ORTHO05D001736 5.0e-16 89.4 294 32.3
Manes.06G084300 Manihot esculenta HOM05D006637 ORTHO05D001736 5.0e-16 89.4 302 32.8
Atru.chr9.567 Acer truncatum HOM05D006637 ORTHO05D001736 1.9e-15 87.4 249 34.9
MD14G1212300 Malus domestica HOM05D006637 ORTHO05D001736 1.9e-15 87.4 262 37.0
Psat4g068920 Pisum sativum HOM05D006637 ORTHO05D001736 4.2e-15 86.3 247 34.8
Duzib068G0311 Durio zibethinus HOM05D006637 ORTHO05D001736 1.6e-14 84.3 251 33.5
Ciclev10023416m.g Citrus clementina HOM05D006637 ORTHO05D001736 2.8e-14 83.6 268 34.3
Phvul.003G184500 Phaseolus vulgaris HOM05D006637 ORTHO05D001736 2.8e-14 83.6 238 34.5
Phvul.009G201900 Phaseolus vulgaris HOM05D006637 ORTHO05D001736 3.6e-14 83.2 257 31.9
Prupe.5G205600 Prunus persica HOM05D006637 ORTHO05D001736 6.1e-14 82.4 267 33.7
TPR.G2044 Trifolium pratense HOM05D006637 ORTHO05D001736 6.1e-14 82.4 252 33.3
Duzib205G1030 Durio zibethinus HOM05D006637 ORTHO05D001736 1.8e-13 80.9 262 33.6
Glyma.05G020700 Glycine max HOM05D006637 ORTHO05D001736 1.8e-13 80.9 245 31.8
Lalb_Chr07g0178311 Lupinus albus HOM05D006637 ORTHO05D001736 4.0e-13 79.7 260 33.5
RcHm_v2.0_Chr7g0183151 Rosa chinensis HOM05D006637 ORTHO05D001736 5.2e-13 79.3 261 33.0
MD06G1225400 Malus domestica HOM05D006637 ORTHO05D001736 6.8e-13 79.0 259 34.4
Ca_21771_v3 Cicer arietinum L. HOM05D006637 ORTHO05D001736 1.2e-12 78.2 261 31.0
Lj4g0016086 Lotus japonicus HOM05D006637 ORTHO05D001736 1.2e-12 78.2 251 32.7
Cfa019342 Carpinus fangiana HOM05D000824 ORTHO05D003555 1.5e-12 77.8 184 36.4
MBI19_g14007_MAGBIO Magnolia biondii HOM05D006637 ORTHO05D001736 5.7e-12 75.9 272 32.0
Cc00_g04710 Coffea canephora HOM05D006637 ORTHO05D001736 1.3e-11 74.7 188 37.2
TWI15G0882 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 1.3e-11 74.7 281 29.5
Thecc.03G102400 Theobroma cacao HOM05D006637 ORTHO05D001736 1.7e-11 74.3 259 33.2
Sed0008450 Sechium edule HOM05D006637 ORTHO05D001736 2.2e-11 73.9 245 34.3
FAN18G2922 Fragaria x ananassa HOM05D006637 ORTHO05D001736 2.8e-11 73.6 273 33.0
PSO017G7320 Papaver somniferum HOM05D006637 ORTHO05D001736 2.8e-11 73.6 213 36.2
Thhalv10005553m.g Eutrema salsugineum HOM05D003787 ORTHO05D001736 3.7e-11 73.2 93 51.6
Medtr4g109570 Medicago truncatula HOM05D006637 ORTHO05D001736 3.7e-11 73.2 209 34.4
Potri.015G057200 Populus trichocarpa HOM05D006637 ORTHO05D001736 3.7e-11 73.2 260 33.5
VMungo1215G2016 Vigna mungo HOM05D006637 ORTHO05D001736 4.9e-11 72.8 237 32.9
FvH4_5g13780 Fragaria vesca HOM05D006637 ORTHO05D001736 6.3e-11 72.4 269 32.0
Sp2g14470 Schrenkiella parvula HOM05D003787 ORTHO05D001736 6.3e-11 72.4 100 49.0
FAN08G0389 Fragaria x ananassa HOM05D006637 ORTHO05D001736 8.3e-11 72.0 278 30.9
Glyma.06G204000 Glycine max HOM05D006637 ORTHO05D001736 1.1e-10 71.6 194 36.1
Sc12g0007280 Simmondsia chinensis HOM05D006637 ORTHO05D001736 1.1e-10 71.6 287 31.4
Gohir.A12G182900 Gossypium hirsutum HOM05D006637 ORTHO05D001736 1.4e-10 71.2 235 34.0
QL10p019649 Quercus lobata HOM05D006637 ORTHO05D001736 1.8e-10 70.9 215 34.0
CiPaw.11G054000 Carya illinoinensis HOM05D006637 ORTHO05D001736 2.4e-10 70.5 251 35.9
FAN13G0480 Fragaria x ananassa HOM05D006637 ORTHO05D001736 2.4e-10 70.5 278 29.9
Nn3g17457 Nelumbo nucifera HOM05D003787 ORTHO05D001736 2.4e-10 70.5 245 29.4
PSO478G0913 Papaver somniferum HOM05D006637 ORTHO05D001736 2.4e-10 70.5 214 35.5
Potri.012G061700 Populus trichocarpa HOM05D006637 ORTHO05D001736 3.1e-10 70.1 261 33.0
Gohir.A03G070200 Gossypium hirsutum HOM05D006637 ORTHO05D001736 4.1e-10 69.7 165 35.8
Actinidia04823 Actinidia chinensis HOM05D006637 ORTHO05D001736 5.4e-10 69.3 117 41.9
Aqoxy3G03685 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 7.0e-10 68.9 191 36.1
Ciclev10033684m.g Citrus clementina HOM05D003787 ORTHO05D001736 7.0e-10 68.9 125 43.2
Gohir.D12G186000 Gossypium hirsutum HOM05D006637 ORTHO05D001736 7.0e-10 68.9 235 34.0
Gorai.008G199400 Gossypium raimondii HOM05D006637 ORTHO05D001736 7.0e-10 68.9 236 34.3
Rhsim12G0148600 Rhododendron simsii HOM05D006637 ORTHO05D001736 7.0e-10 68.9 177 37.9
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 9.2e-10 68.6 89 48.3
Gohir.D03G096675 Gossypium hirsutum HOM05D006637 ORTHO05D001736 9.2e-10 68.6 180 34.4
Glyma.17G078600 Glycine max HOM05D006637 ORTHO05D001736 1.2e-09 68.2 253 30.4
CsaV3_1G002960 Cucumis sativus L. HOM05D006637 ORTHO05D001736 1.6e-09 67.8 245 31.4
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 2.0e-09 67.4 87 48.3
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 2.0e-09 67.4 87 48.3
AT2G03630 Arabidopsis thaliana HOM05D003787 ORTHO05D001736 2.7e-09 67.0 245 31.8
ClCG06G015610 Citrullus lanatus HOM05D006637 ORTHO05D001736 2.7e-09 67.0 198 32.3
Nn4g23435 Nelumbo nucifera HOM05D006637 ORTHO05D001736 2.7e-09 67.0 273 30.4
CSS0023913 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 3.5e-09 66.6 275 31.3
Lj5C102T22 Lonicera japonica HOM05D006637 ORTHO05D001736 3.5e-09 66.6 240 29.2
Manes.14G086000 Manihot esculenta HOM05D006637 ORTHO05D001736 3.5e-09 66.6 278 30.2
CAN.G1228.21 Capsicum annuum HOM05D006637 ORTHO05D001736 4.5e-09 66.2 249 31.3
MELO3C017227.2 Cucumis melo HOM05D006637 ORTHO05D001736 5.9e-09 65.9 247 31.2
Gorai.003G101400 Gossypium raimondii HOM05D006637 ORTHO05D001736 5.9e-09 65.9 180 33.9
THA.LOC104801821 Tarenaya hassleriana HOM05D003787 ORTHO05D001736 5.9e-09 65.9 245 31.4
Thecc.02G330000 Theobroma cacao HOM05D003787 ORTHO05D001736 5.9e-09 65.9 70 55.7
AL5G13410 Arabidopsis lyrata HOM05D006637 ORTHO05D001736 1.0e-08 65.1 61 57.4
Carub.0005s0277 Capsella rubella HOM05D003787 ORTHO05D001736 1.0e-08 65.1 257 28.8
TPR.G12192 Trifolium pratense HOM05D006637 ORTHO05D001736 1.0e-08 65.1 267 30.3
TWI81G0402 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 1.0e-08 65.1 269 31.6
Glyma.04G162200 Glycine max HOM05D006637 ORTHO05D001736 1.3e-08 64.7 251 29.1
Haze_07733 Corylus avellana HOM05D006637 ORTHO05D001736 1.7e-08 64.3 152 38.2
Gohir.D11G036700 Gossypium hirsutum HOM05D006637 ORTHO05D001736 1.7e-08 64.3 280 27.9
PGR083G0945 Punica granatum HOM05D006637 ORTHO05D001736 1.7e-08 64.3 286 30.1
Sabra12G0044700 Salix brachista HOM05D006637 ORTHO05D001736 1.7e-08 64.3 198 35.4
COL.COLO4_06852 Corchorus olitorius HOM05D006637 ORTHO05D001736 2.3e-08 63.9 195 34.4
MELO3C012154.2 Cucumis melo HOM05D003787 ORTHO05D001736 2.3e-08 63.9 94 43.6
CsaV3_5G033340 Cucumis sativus L. HOM05D003787 ORTHO05D001736 2.3e-08 63.9 74 50.0
DCAR_011559 Daucus carota HOM05D006637 ORTHO05D001736 2.3e-08 63.9 79 48.1
Gorai.007G039500 Gossypium raimondii HOM05D006637 ORTHO05D001736 2.3e-08 63.9 277 27.8
Potri.010G158000 Populus trichocarpa HOM05D003787 ORTHO05D001736 2.3e-08 63.9 253 31.2
COL.COLO4_27878 Corchorus olitorius HOM05D003787 ORTHO05D001736 3.8e-08 63.2 125 39.2
Duzib251G0768 Durio zibethinus HOM05D003787 ORTHO05D001736 3.8e-08 63.2 71 54.9
PSO478G3423 Papaver somniferum HOM05D006637 ORTHO05D001736 3.8e-08 63.2 208 33.2
Sopen03g034130 Solanum pennellii HOM05D006637 ORTHO05D001736 5.0e-08 62.8 83 47.0
AUR62021555 Chenopodium quinoa HOM05D006637 ORTHO05D001736 6.6e-08 62.4 137 39.4
Potri.008G096300 Populus trichocarpa HOM05D003787 ORTHO05D001736 6.6e-08 62.4 111 40.5
Sc10g0009690 Simmondsia chinensis HOM05D006637 ORTHO05D001736 6.6e-08 62.4 273 31.5
TWI75G0087 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 6.6e-08 62.4 253 29.2
GSVIVG01012223001 Vitis vinifera HOM05D003787 ORTHO05D001736 6.6e-08 62.4 107 43.0
Atru.chr11.1622 Acer truncatum HOM05D003787 ORTHO05D001736 8.6e-08 62.0 185 31.9
BcaB07g30663 Brassica carinata HOM05D003787 ORTHO05D001736 8.6e-08 62.0 96 45.8
CSS0036361 Camellia sinensis var. sinensis HOM05D006637 ORTHO05D001736 8.6e-08 62.0 178 33.1
Rhsim09G0127000 Rhododendron simsii HOM05D003787 ORTHO05D001736 8.6e-08 62.0 126 40.5
Sed0021860 Sechium edule HOM05D006637 ORTHO05D001736 8.6e-08 62.0 250 33.2
TAR371G0370 Trochodendron aralioides HOM05D006637 ORTHO05D001736 8.6e-08 62.0 247 29.1
AUR62008536 Chenopodium quinoa HOM05D006637 ORTHO05D001736 1.1e-07 61.6 139 38.8
vmacro16493 Vaccinium macrocarpon HOM05D006637 ORTHO05D001736 1.1e-07 61.6 179 34.1
BraA09t38045Z Brassica rapa HOM05D003787 ORTHO05D001736 1.5e-07 61.2 173 33.5
Duzib268G1106 Durio zibethinus HOM05D003787 ORTHO05D001736 1.5e-07 61.2 89 44.9
QL03p074082 Quercus lobata HOM05D003787 ORTHO05D001736 1.5e-07 61.2 222 31.5
Sabra08G0072600 Salix brachista HOM05D003787 ORTHO05D001736 1.5e-07 61.2 187 34.2
Sabra10G0120000 Salix brachista HOM05D003787 ORTHO05D001736 1.9e-07 60.8 111 41.4
vmacro10428 Vaccinium macrocarpon HOM05D003787 ORTHO05D001736 1.9e-07 60.8 122 42.6
PGR119G1736 Punica granatum HOM05D003787 ORTHO05D001736 2.5e-07 60.5 239 28.0
TWI60G0888 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 2.5e-07 60.5 225 31.1
Ca_14358_v3 Cicer arietinum L. HOM05D006637 ORTHO05D001736 3.3e-07 60.1 285 30.2
Lsat_1_v5_gn_4_111160 Lactuca sativa HOM05D006637 ORTHO05D001736 3.3e-07 60.1 77 48.1
PSO017G1216 Papaver somniferum HOM05D006637 ORTHO05D001736 3.3e-07 60.1 208 32.7
A09p24510 Brassica napus HOM05D003787 ORTHO05D001736 4.3e-07 59.7 210 32.4
TAR622G0628 Trochodendron aralioides HOM05D003787 ORTHO05D001736 4.3e-07 59.7 251 29.5
CSS0001662 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 5.6e-07 59.3 261 29.5
Migut.H00622 Erythranthe guttata HOM05D003787 ORTHO05D001736 5.6e-07 59.3 265 31.7
PGSC0003DMG400024635 Solanum tuberosum HOM05D006637 ORTHO05D001736 7.3e-07 58.9 84 45.2
DCAR_025433 Daucus carota HOM05D003787 ORTHO05D001736 9.5e-07 58.5 230 30.9
CiPaw.05G124800 Carya illinoinensis HOM05D003787 ORTHO05D001736 1.2e-06 58.2 87 44.8
Actinidia17586 Actinidia chinensis HOM05D003787 ORTHO05D001736 1.6e-06 57.8 256 31.6
ClCG05G023700 Citrullus lanatus HOM05D003787 ORTHO05D001736 1.6e-06 57.8 182 34.1
Medtr3g025960 Medicago truncatula HOM05D006637 ORTHO05D001736 1.6e-06 57.8 312 27.2
Dinv22776 Davidia involucrata HOM05D006637 ORTHO05D001736 2.1e-06 57.4 185 31.9
Phvul.004G037400 Phaseolus vulgaris HOM05D003787 ORTHO05D001736 2.1e-06 57.4 255 31.0
Aa31LG2G7040 Aethionema arabicum HOM05D003787 ORTHO05D001736 2.8e-06 57.0 224 29.5
ATR0177G031 Amborella trichopoda HOM05D003787 ORTHO05D001736 3.6e-06 56.6 271 31.0
Lju41C3T13 Lonicera japonica HOM05D003787 ORTHO05D001736 3.6e-06 56.6 149 38.9
Manes.01G027300 Manihot esculenta HOM05D003787 ORTHO05D001736 3.6e-06 56.6 84 45.2
VMungo0464G0106 Vigna mungo HOM05D003787 ORTHO05D001736 3.6e-06 56.6 258 27.1
CSS0033309 Camellia sinensis var. sinensis HOM05D006637 ORTHO05D001736 6.1e-06 55.8 165 31.5
CDE04G2454 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 6.1e-06 55.8 82 43.9
Oeu007068.1 Olea europaea HOM05D003787 ORTHO05D001736 6.1e-06 55.8 263 33.1
Os07g0298100 Oryza sativa ssp. japonica HOM05D003787 ORTHO05D001736 6.1e-06 55.8 108 40.7
TWI79G0236 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 6.1e-06 55.8 284 27.5
Aqoxy3G00509 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 8.0e-06 55.5 246 29.3


User provided reference genes

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