Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24826 Brassica carinata HOM05D006989 ORTHO05D008787 7.7e-161 570.5 298 100.0
BcaC03g15478 Brassica carinata HOM05D006989 ORTHO05D008787 2.6e-140 502.3 319 87.5
BolC2t09188H Brassica oleracea HOM05D006989 ORTHO05D008787 1.3e-139 500.0 319 86.8
C02p31570 Brassica napus HOM05D006989 ORTHO05D008787 8.6e-136 487.3 318 85.2
A02p19070 Brassica napus HOM05D006989 ORTHO05D008787 2.5e-135 485.7 318 84.9
BraA02t06954Z Brassica rapa HOM05D006989 ORTHO05D008787 2.5e-135 485.7 318 84.9
BcaB05g24825 Brassica carinata HOM05D006989 ORTHO05D008787 1.0e-128 463.8 320 81.9
Sp5g29300 Schrenkiella parvula HOM05D006989 ORTHO05D008787 4.4e-124 448.4 318 77.7
Thhalv10018882m.g Eutrema salsugineum HOM05D006989 ORTHO05D008787 2.1e-121 439.5 319 75.9
AT1G74070 Arabidopsis thaliana HOM05D006989 ORTHO05D008787 1.7e-112 409.8 318 72.0
CARHR067230 Cardamine hirsuta HOM05D006989 ORTHO05D008787 3.0e-112 409.1 319 73.0
AL2G33970 Arabidopsis lyrata HOM05D006989 ORTHO05D008787 1.1e-109 400.6 318 71.1
Carub.0002s2087 Capsella rubella HOM05D006989 ORTHO05D008787 1.3e-107 393.7 319 70.2
Aa31LG4G4380 Aethionema arabicum HOM05D006989 ORTHO05D008787 1.3e-104 383.6 318 67.0
THA.LOC104808300 Tarenaya hassleriana HOM05D006989 ORTHO05D008787 9.7e-79 297.7 315 56.5
CANSAT80G0764 Cannabis sativa HOM05D006989 ORTHO05D008787 5.7e-71 271.9 325 51.1
Atru.chr9.726 Acer truncatum HOM05D006989 ORTHO05D008787 2.2e-70 270.0 327 53.2
GSVIVG01008222001 Vitis vinifera HOM05D006989 ORTHO05D008787 1.3e-67 260.8 328 52.7
Dinv36891 Davidia involucrata HOM05D006989 ORTHO05D008787 2.9e-67 259.6 332 50.6
QL10p023271 Quercus lobata HOM05D006989 ORTHO05D008787 2.9e-67 259.6 330 50.9
PGR044G0394 Punica granatum HOM05D006989 ORTHO05D008787 5.0e-67 258.8 323 52.0
Eucgr.K02650 Eucalyptus grandis HOM05D006989 ORTHO05D008787 1.4e-66 257.3 340 50.9
Haze_18586 Corylus avellana HOM05D006989 ORTHO05D008787 1.9e-66 256.9 333 49.5
Ciclev10021171m.g Citrus clementina HOM05D006989 ORTHO05D008787 3.2e-66 256.1 326 50.6
Gohir.A03G057400 Gossypium hirsutum HOM05D006989 ORTHO05D008787 7.2e-66 255.0 337 49.9
TAR371G0245 Trochodendron aralioides HOM05D006989 ORTHO05D008787 7.2e-66 255.0 324 49.4
Gohir.D03G108800 Gossypium hirsutum HOM05D006989 ORTHO05D008787 9.4e-66 254.6 337 49.9
Cfa019838 Carpinus fangiana HOM05D006989 ORTHO05D008787 2.1e-65 253.4 333 49.8
Prupe.5G215800 Prunus persica HOM05D006989 ORTHO05D008787 1.4e-64 250.8 319 51.4
Peaxi162Scf00015g00627 Petunia axillaris HOM05D006989 ORTHO05D008787 1.8e-64 250.4 315 50.8
Sabra12G0041400 Salix brachista HOM05D006989 ORTHO05D008787 1.8e-64 250.4 330 48.8
Gorai.003G114900 Gossypium raimondii HOM05D006989 ORTHO05D008787 3.9e-64 249.2 337 49.3
Lj9A432T70 Lonicera japonica HOM05D006989 ORTHO05D008787 5.2e-64 248.8 323 50.5
MD14G1220500 Malus domestica HOM05D006989 ORTHO05D008787 8.8e-64 248.1 310 51.3
Lj4g0002441 Lotus japonicus HOM05D006989 ORTHO05D008787 1.1e-63 247.7 323 49.5
arahy.Tifrunner.gnm1.ann1.00I7KW Arachis hypogaea HOM05D006989 ORTHO05D008787 2.0e-63 246.9 344 48.0
PGSC0003DMG400005701 Solanum tuberosum HOM05D006989 ORTHO05D008787 2.0e-63 246.9 319 48.6
arahy.Tifrunner.gnm1.ann1.YL5ALI Arachis hypogaea HOM05D006989 ORTHO05D008787 3.3e-63 246.1 300 50.7
CAN.G438.105 Capsicum annuum HOM05D006989 ORTHO05D008787 4.4e-63 245.7 323 48.0
CAN.G5608.1 Capsicum annuum HOM05D006989 ORTHO05D008787 4.4e-63 245.7 323 48.0
Potri.012G058700 Populus trichocarpa HOM05D006989 ORTHO05D008787 4.4e-63 245.7 329 49.2
Thecc.03G026700 Theobroma cacao HOM05D006989 ORTHO05D008787 4.4e-63 245.7 331 49.5
Manes.05G117800 Manihot esculenta HOM05D006989 ORTHO05D008787 5.7e-63 245.4 330 51.2
Nitab4.5_0000410g0190 Nicotiana tabacum HOM05D006989 ORTHO05D008787 1.3e-62 244.2 325 47.4
Solyc03g119860.3 Solanum lycopersicum HOM05D006989 ORTHO05D008787 1.7e-62 243.8 324 47.8
Sopen03g038720 Solanum pennellii HOM05D006989 ORTHO05D008787 2.8e-62 243.0 322 47.8
MBI10_g46799_MAGBIO Magnolia biondii HOM05D006989 ORTHO05D008787 4.8e-62 242.3 232 58.6
CDE07G1569 Ceratophyllum demersum HOM05D006989 ORTHO05D008787 8.2e-62 241.5 283 50.5
Sed0007811 Sechium edule HOM05D006989 ORTHO05D008787 1.8e-61 240.4 330 48.2
Duzib068G0613 Durio zibethinus HOM05D006989 ORTHO05D008787 2.4e-61 240.0 332 48.8
Cc04_g07650 Coffea canephora HOM05D006989 ORTHO05D008787 4.1e-61 239.2 312 50.0
CsaV3_1G006440 Cucumis sativus L. HOM05D006989 ORTHO05D008787 1.2e-60 237.7 288 50.7
Nitab4.5_0003716g0040 Nicotiana tabacum HOM05D006989 ORTHO05D008787 2.0e-60 236.9 329 46.5
Psat4g046600 Pisum sativum HOM05D006989 ORTHO05D008787 2.0e-60 236.9 332 47.6
Medtr4g111720 Medicago truncatula HOM05D006989 ORTHO05D008787 2.6e-60 236.5 319 48.6
EL10Ac5g11238 Beta vulgaris HOM05D006989 ORTHO05D008787 3.5e-60 236.1 331 47.7
Glyma.17G122500 Glycine max HOM05D006989 ORTHO05D008787 3.5e-60 236.1 344 46.5
Oeu027137.1 Olea europaea HOM05D006989 ORTHO05D008787 4.5e-60 235.7 305 50.5
ClCG04G011330 Citrullus lanatus HOM05D006989 ORTHO05D008787 5.9e-60 235.3 317 48.3
TPR.G26751 Trifolium pratense HOM05D006989 ORTHO05D008787 1.3e-59 234.2 270 53.0
Glyma.05G014300 Glycine max HOM05D006989 ORTHO05D008787 1.7e-59 233.8 233 58.4
Sc04g0003800 Simmondsia chinensis HOM05D006989 ORTHO05D008787 1.7e-59 233.8 281 49.8
MELO3C002070.2 Cucumis melo HOM05D006989 ORTHO05D008787 2.2e-59 233.4 313 47.9
ECA232G4870 Erigeron canadensis HOM05D006989 ORTHO05D008787 3.8e-59 232.6 242 55.0
Hund09990 Selenicereus undatus HOM05D006989 ORTHO05D008787 3.8e-59 232.6 304 51.3
Aqoxy3G00372 Aquilegia oxysepala HOM05D006989 ORTHO05D008787 1.1e-58 231.1 305 48.5
Phvul.003G178500 Phaseolus vulgaris HOM05D006989 ORTHO05D008787 2.5e-58 229.9 239 54.4
FAN08G2263 Fragaria x ananassa HOM05D006989 ORTHO05D008787 3.2e-58 229.6 353 44.2
CiPaw.16G083100 Carya illinoinensis HOM05D006989 ORTHO05D008787 4.2e-58 229.2 326 46.3
FAN13G0084 Fragaria x ananassa HOM05D006989 ORTHO05D008787 7.2e-58 228.4 373 42.9
HanXRQChr16g0502051 Helianthus annuus HOM05D006989 ORTHO05D008787 9.4e-58 228.0 232 56.0
Hma1.2p1_0340F.1_g130010 Hydrangea macrophylla HOM05D006989 ORTHO05D008787 2.1e-57 226.9 221 56.1
vmacro17686 Vaccinium macrocarpon HOM05D006989 ORTHO05D008787 2.1e-57 226.9 329 44.4
AUR62032178 Chenopodium quinoa HOM05D006989 ORTHO05D008787 6.1e-57 225.3 241 55.2
Lalb_Chr13g0302431 Lupinus albus HOM05D006989 ORTHO05D008787 6.1e-57 225.3 364 44.0
DCAR_011597 Daucus carota HOM05D006989 ORTHO05D008787 1.0e-56 224.6 226 56.6
FvH4_5g12840 Fragaria vesca HOM05D006989 ORTHO05D008787 1.0e-56 224.6 369 42.8
VMungo1215G1232 Vigna mungo HOM05D006989 ORTHO05D008787 1.4e-56 224.2 239 54.0
AUR62036938 Chenopodium quinoa HOM05D006989 ORTHO05D008787 2.3e-56 223.4 226 58.0
FAN18G3152 Fragaria x ananassa HOM05D006989 ORTHO05D008787 3.0e-56 223.0 370 42.7
TWI60G0487 Tripterygium wilfordii HOM05D006989 ORTHO05D008787 4.0e-56 222.6 359 43.7
Nn4g23684 Nelumbo nucifera HOM05D006989 ORTHO05D008787 6.7e-56 221.9 278 51.1
FAN18G0391 Fragaria x ananassa HOM05D006989 ORTHO05D008787 1.1e-55 221.1 373 42.1
CSS0004213 Camellia sinensis var. sinensis HOM05D006989 ORTHO05D008787 2.6e-55 219.9 220 55.5
PSO017G5495 Papaver somniferum HOM05D006989 ORTHO05D008787 1.7e-54 217.2 221 55.7
PSO478G0366 Papaver somniferum HOM05D006989 ORTHO05D008787 1.7e-54 217.2 221 55.2
unitig_0.g1066 Utricularia gibba HOM05D000749 ORTHO05D008787 4.8e-54 215.7 317 44.2
MSTRG.11318 Avicennia marina HOM05D006989 ORTHO05D008787 1.4e-53 214.2 308 46.4
Lsat_1_v5_gn_4_112081 Lactuca sativa HOM05D006989 ORTHO05D008787 3.5e-52 209.5 209 55.5
SGA_v2.0_scaffold19G08801 Striga asiatica HOM05D003339 ORTHO05D003847 8.5e-51 204.9 311 45.7
ATR0598G242 Amborella trichopoda HOM05D006989 ORTHO05D008787 1.5e-50 204.1 241 48.5
Os01g0111100 Oryza sativa ssp. japonica HOM05D006989 ORTHO05D008787 1.5e-50 204.1 222 53.2
HPP92_008287 Vanilla planifolia HOM05D006989 ORTHO05D008787 4.4e-47 192.6 311 42.1
SEGI_21686 Sequoiadendron giganteum HOM05D006989 ORTHO05D008787 7.5e-47 191.8 270 44.1
Zm00001eb334490 Zea mays HOM05D006989 ORTHO05D008787 1.4e-45 187.6 216 50.0
RcHm_v2.0_Chr7g0184401 Rosa chinensis HOM05D006989 ORTHO05D008787 1.9e-42 177.2 292 43.2
Ca_02529_v3 Cicer arietinum L. HOM05D006989 ORTHO05D008787 1.8e-40 170.6 272 44.1
AagrBONN_evm.TU.Sc2ySwM_228.3224 Anthoceros agrestis HOM05D006989 ORTHO05D008787 4.0e-40 169.5 224 44.2
Migut.I00400 Erythranthe guttata HOM05D006989 ORTHO05D008787 6.8e-40 168.7 283 42.4
SMO358G0665 Selaginella moellendorffii HOM05D006989 ORTHO05D008787 5.4e-37 159.1 222 41.9
Pp3c16_25910 Physcomitrium patens HOM05D006989 ORTHO05D008787 7.0e-37 158.7 220 43.2
Mapoly0184s0020 Marchantia polymorpha HOM05D006989 ORTHO05D008787 1.7e-35 154.1 284 38.7
Hma1.2p1_0340F.1_g130020 Hydrangea macrophylla HOM05D006989 ORTHO05D008787 2.9e-35 153.3 171 52.0
Cpa.g.sc13.68 Carica papaya HOM05D006989 ORTHO05D008787 4.7e-33 146.0 171 50.3
QL02p096006 Quercus lobata HOM05D006989 ORTHO05D008787 2.0e-31 140.6 134 54.5
Cpa.g.sc118.46 Carica papaya HOM05D006989 ORTHO05D008787 2.3e-24 117.1 81 70.4
Cre03.g174750 Chlamydomonas reinhardtii HOM05D006989 ORTHO05D008787 2.3e-24 117.1 218 34.4
CDE06G2777 Ceratophyllum demersum HOM05D006989 ORTHO05D008787 1.3e-22 111.3 296 33.4
Rhsim08G0138500 Rhododendron simsii HOM05D006989 ORTHO05D008787 2.2e-22 110.5 225 39.1
Oeu016157.1 Olea europaea HOM05D006989 ORTHO05D008787 7.3e-18 95.5 86 58.1
MCO04G083 Micromonas commoda HOM05D006989 ORTHO05D008787 4.9e-14 82.8 101 46.5
CBR_g48720 Chara braunii HOM05D006989 ORTHO05D008787 8.3e-14 82.0 134 41.8
PRCOL_00006954 Prasinoderma coloniale HOM05D006989 ORTHO05D008787 8.3e-14 82.0 228 29.4
Mapoly0218s0001 Marchantia polymorpha HOM05D007046 ORTHO05D008788 2.1e-12 77.4 202 30.2
AagrBONN_evm.TU.Sc2ySwM_117.689 Anthoceros agrestis HOM05D007046 ORTHO05D008788 7.8e-12 75.5 205 31.2
SalBow1G5965 Salvia bowleyana HOM05D007046 ORTHO05D008788 8.6e-11 72.0 267 28.5
Pp3c14_1150 Physcomitrium patens HOM05D007046 ORTHO05D008788 5.6e-10 69.3 277 26.4
ATR0629G031 Amborella trichopoda HOM05D007046 ORTHO05D008788 3.6e-09 66.6 200 27.5
Cre12.g544114 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D000392 4.0e-08 63.2 75 40.0
Cre12.g544150 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D000392 4.0e-08 63.2 75 40.0
Cc06_g07400 Coffea canephora HOM05D007046 ORTHO05D008788 4.0e-08 63.2 207 26.1
Aqoxy2G02409 Aquilegia oxysepala HOM05D000144 ORTHO05D000392 5.2e-08 62.8 158 29.7
Hma1.2p1_0949F.1_g240590 Hydrangea macrophylla HOM05D007046 ORTHO05D008788 5.2e-08 62.8 199 29.6
Hma1.2p1_1784F.1_g302170 Hydrangea macrophylla HOM05D007046 ORTHO05D008788 5.2e-08 62.8 197 29.4
Migut.J01275 Erythranthe guttata HOM05D007046 ORTHO05D008788 6.8e-08 62.4 297 25.3
Sc08g0005790 Simmondsia chinensis HOM05D007046 ORTHO05D008788 6.8e-08 62.4 289 26.0
Sopen07g003150 Solanum pennellii HOM05D007046 ORTHO05D008788 6.8e-08 62.4 296 26.7
CANSAT25G2396 Cannabis sativa HOM05D000144 ORTHO05D000392 8.9e-08 62.0 159 30.2
Eucgr.A00992 Eucalyptus grandis HOM05D000144 ORTHO05D000392 8.9e-08 62.0 171 29.2
PGSC0003DMG400030738 Solanum tuberosum HOM05D007046 ORTHO05D008788 8.9e-08 62.0 296 27.0
CSS0047212 Camellia sinensis var. sinensis HOM05D007046 ORTHO05D008788 1.2e-07 61.6 200 27.0
MCO15G388 Micromonas commoda HOM05D000144 ORTHO05D000392 1.2e-07 61.6 185 29.7
Rhsim03G0254300 Rhododendron simsii HOM05D007046 ORTHO05D008788 2.0e-07 60.8 215 28.4
Solyc07g007110.4 Solanum lycopersicum HOM05D007046 ORTHO05D008788 2.0e-07 60.8 301 26.6
MSTRG.19625 Avicennia marina HOM05D007046 ORTHO05D008788 2.6e-07 60.5 316 25.9
Lsat_1_v5_gn_7_47900 Lactuca sativa HOM05D007046 ORTHO05D008788 2.6e-07 60.5 279 28.0
DCAR_008866 Daucus carota HOM05D007046 ORTHO05D008788 3.4e-07 60.1 201 24.4
HanXRQChr03g0064041 Helianthus annuus HOM05D007046 ORTHO05D008788 5.8e-07 59.3 203 28.1
Nitab4.5_0005384g0010 Nicotiana tabacum HOM05D007046 ORTHO05D008788 5.8e-07 59.3 200 26.5
Sabra02G0130900 Salix brachista HOM05D000144 ORTHO05D000392 5.8e-07 59.3 163 31.3
Hund09318 Selenicereus undatus HOM05D007046 ORTHO05D008788 7.6e-07 58.9 203 25.1
Carub.0005s3002 Capsella rubella HOM05D000144 ORTHO05D000392 9.9e-07 58.5 206 27.7
PSO210G0748 Papaver somniferum HOM05D007046 ORTHO05D008788 9.9e-07 58.5 202 28.2
SMO197G0077 Selaginella moellendorffii HOM05D007046 ORTHO05D008788 9.9e-07 58.5 200 24.5
Sc14g0009160 Simmondsia chinensis HOM05D000144 ORTHO05D000392 9.9e-07 58.5 201 28.4
TAR625G0755 Trochodendron aralioides HOM05D007046 ORTHO05D008788 9.9e-07 58.5 222 28.4
ClCG02G017260 Citrullus lanatus HOM05D007046 ORTHO05D008788 1.3e-06 58.2 199 27.6
Lj9A708G24 Lonicera japonica HOM05D007046 ORTHO05D008788 1.7e-06 57.8 219 26.0
Cpa.g.sc57.46 Carica papaya HOM05D000144 ORTHO05D000392 2.2e-06 57.4 158 30.4
CDE02G2211 Ceratophyllum demersum HOM05D007046 ORTHO05D008788 2.2e-06 57.4 287 26.1
ECA240G3524 Erigeron canadensis HOM05D007046 ORTHO05D008788 2.2e-06 57.4 203 26.1
Sed0015786 Sechium edule HOM05D000144 ORTHO05D000392 2.2e-06 57.4 156 29.5
CANSAT25G2108 Cannabis sativa HOM05D000144 ORTHO05D000392 2.9e-06 57.0 171 28.1
Dinv33182 Davidia involucrata HOM05D000144 ORTHO05D000392 2.9e-06 57.0 159 28.3
Duzib138G1372 Durio zibethinus HOM05D000144 ORTHO05D000392 2.9e-06 57.0 59 44.1
Oeu052181.1 Olea europaea HOM05D007046 ORTHO05D008788 2.9e-06 57.0 309 25.9
RcHm_v2.0_Chr3g0485561 Rosa chinensis HOM05D000144 ORTHO05D000392 2.9e-06 57.0 158 27.8
Atru.chr1.2029 Acer truncatum HOM05D000144 ORTHO05D013356 3.8e-06 56.6 171 28.7
AagrBONN_evm.TU.Sc2ySwM_117.3441 Anthoceros agrestis HOM05D000144 ORTHO05D000392 3.8e-06 56.6 59 37.3
arahy.Tifrunner.gnm1.ann1.I71V0M Arachis hypogaea HOM05D007046 ORTHO05D008788 3.8e-06 56.6 282 25.5
AUR62002438 Chenopodium quinoa HOM05D000144 ORTHO05D000392 3.8e-06 56.6 158 28.5
Manes.05G006900 Manihot esculenta HOM05D000144 ORTHO05D000392 3.8e-06 56.6 159 28.9
PSO447G0221 Papaver somniferum HOM05D007046 ORTHO05D008788 3.8e-06 56.6 202 28.2
Potri.002G185200 Populus trichocarpa HOM05D000144 ORTHO05D000392 3.8e-06 56.6 163 30.7
TWI14G0035 Tripterygium wilfordii HOM05D000144 ORTHO05D000392 3.8e-06 56.6 158 30.4
VMungo1383G2335 Vigna mungo HOM05D000144 ORTHO05D000392 3.8e-06 56.6 59 39.0
ATR0796G159 Amborella trichopoda HOM05D000144 ORTHO05D000392 4.9e-06 56.2 158 28.5
EL10Ac3g06133 Beta vulgaris HOM05D000144 ORTHO05D000392 4.9e-06 56.2 158 29.7
Cfa020888 Carpinus fangiana HOM05D007046 ORTHO05D008788 4.9e-06 56.2 199 26.1
MCO05G162 Micromonas commoda HOM05D007046 ORTHO05D008788 4.9e-06 56.2 204 26.5
SMO298G0044 Selaginella moellendorffii HOM05D000144 ORTHO05D000392 4.9e-06 56.2 226 27.4
Hund31252 Selenicereus undatus HOM05D000144 ORTHO05D000392 4.9e-06 56.2 152 31.6
Hund31253 Selenicereus undatus HOM05D000144 ORTHO05D000392 4.9e-06 56.2 152 31.6
SEGI_34951 Sequoiadendron giganteum HOM05D000144 ORTHO05D000392 4.9e-06 56.2 59 39.0
Aqoxy7G03530 Aquilegia oxysepala HOM05D007046 ORTHO05D008788 6.4e-06 55.8 200 27.5
DCAR_026446 Daucus carota HOM05D000144 ORTHO05D000392 6.4e-06 55.8 230 27.8
Duzib133G1420 Durio zibethinus HOM05D000144 ORTHO05D000392 6.4e-06 55.8 159 28.3
FvH4_1g26090 Fragaria vesca HOM05D000144 ORTHO05D000392 6.4e-06 55.8 158 27.8
QL09p037431 Quercus lobata HOM05D000144 ORTHO05D000392 6.4e-06 55.8 159 28.3
CsaV3_2G003530 Cucumis sativus L. HOM05D007046 ORTHO05D008788 8.4e-06 55.5 198 26.8
Thhalv10004727m.g Eutrema salsugineum HOM05D007046 ORTHO05D008788 8.4e-06 55.5 200 26.5
Lj1g0005245 Lotus japonicus HOM05D000144 ORTHO05D000392 8.4e-06 55.5 156 29.5
PRCOL_00003052 Prasinoderma coloniale HOM05D007046 ORTHO05D008788 8.4e-06 55.5 211 27.0
RcHm_v2.0_Chr2g0135271 Rosa chinensis HOM05D000144 ORTHO05D000392 8.4e-06 55.5 59 40.7
RcHm_v2.0_Chr3g0491891 Rosa chinensis HOM05D000144 ORTHO05D000392 8.4e-06 55.5 59 40.7


User provided reference genes

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