Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24819 Brassica carinata HOM05D005975 ORTHO05D007373 0.0e+00 1239.6 620 100.0
BraA02t06937Z Brassica rapa HOM05D005975 ORTHO05D007373 0.0e+00 1174.8 622 94.7
BolC2t09180H Brassica oleracea HOM05D005975 ORTHO05D007373 0.0e+00 1170.2 625 93.9
A02p18950 Brassica napus HOM05D005975 ORTHO05D007373 0.0e+00 1168.7 623 94.4
BcaC03g15468 Brassica carinata HOM05D005975 ORTHO05D007373 0.0e+00 1162.5 628 93.3
C02p31490 Brassica napus HOM05D005975 ORTHO05D007373 0.0e+00 1157.1 631 92.9
Thhalv10018286m.g Eutrema salsugineum HOM05D005975 ORTHO05D007373 0.0e+00 1102.8 628 88.4
AL2G33760 Arabidopsis lyrata HOM05D005975 ORTHO05D007373 0.0e+00 1093.2 630 86.8
AT1G73930 Arabidopsis thaliana HOM05D005975 ORTHO05D007373 0.0e+00 1091.6 629 87.1
CARHR067040 Cardamine hirsuta HOM05D005975 ORTHO05D007373 0.0e+00 1086.2 629 87.3
Sp5g29130 Schrenkiella parvula HOM05D005975 ORTHO05D007373 8.2e-306 1053.1 627 84.8
THA.LOC104808292 Tarenaya hassleriana HOM05D005975 ORTHO05D007373 5.0e-295 1017.3 625 79.7
Aa31LG4G4220 Aethionema arabicum HOM05D005975 ORTHO05D007373 5.1e-292 1007.3 629 81.4
Duzib205G1016 Durio zibethinus HOM05D005975 ORTHO05D007373 9.4e-278 959.9 660 72.3
Thecc.03G028700 Theobroma cacao HOM05D005975 ORTHO05D007373 2.0e-275 952.2 655 72.4
RcHm_v2.0_Chr7g0184651 Rosa chinensis HOM05D005975 ORTHO05D007373 1.3e-271 939.5 660 71.4
Gohir.A11G007000 Gossypium hirsutum HOM05D005975 ORTHO05D007373 2.5e-270 935.3 657 70.8
Gorai.007G007400 Gossypium raimondii HOM05D005975 ORTHO05D007373 9.4e-270 933.3 657 70.6
Gohir.D11G006100 Gossypium hirsutum HOM05D005975 ORTHO05D007373 2.7e-269 931.8 657 70.3
PGR083G1175 Punica granatum HOM05D005975 ORTHO05D007373 6.1e-269 930.6 654 70.2
FvH4_5g12680 Fragaria vesca HOM05D005975 ORTHO05D007373 5.2e-268 927.5 655 71.0
Ciclev10019197m.g Citrus clementina HOM05D005975 ORTHO05D007373 8.8e-268 926.8 659 69.0
FAN18G3396 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.5e-267 926.0 655 71.0
Manes.05G139300 Manihot esculenta HOM05D005975 ORTHO05D007373 4.4e-267 924.5 662 69.3
MD14G1222100 Malus domestica HOM05D005975 ORTHO05D007373 8.3e-266 920.2 653 70.0
MD06G1211600 Malus domestica HOM05D005975 ORTHO05D007373 1.1e-265 919.8 657 70.0
FAN04G2679 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.8e-265 919.1 671 69.4
FAN08G0232 Fragaria x ananassa HOM05D005975 ORTHO05D007373 4.1e-265 917.9 659 70.4
GSVIVG01008239001 Vitis vinifera HOM05D005975 ORTHO05D007373 2.0e-264 915.6 634 72.6
Eucgr.B00701 Eucalyptus grandis HOM05D005975 ORTHO05D007373 1.7e-263 912.5 651 70.7
FAN13G1844 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.7e-263 912.5 666 69.2
Potri.012G060200 Populus trichocarpa HOM05D005975 ORTHO05D007373 6.6e-263 910.6 662 68.3
Lalb_Chr12g0197601 Lupinus albus HOM05D005975 ORTHO05D007373 1.6e-261 906.0 659 69.3
Sabra12G0043300 Salix brachista HOM05D005975 ORTHO05D007373 2.8e-261 905.2 653 68.3
Potri.015G049900 Populus trichocarpa HOM05D005975 ORTHO05D007373 4.7e-261 904.4 658 68.5
Hma1.2p1_0592F.1_g185285 Hydrangea macrophylla HOM05D005975 ORTHO05D007373 8.0e-261 903.7 652 69.8
Phvul.009G200500 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 8.0e-261 903.7 632 70.3
Atru.chr9.776 Acer truncatum HOM05D005975 ORTHO05D007373 1.8e-260 902.5 620 71.1
CiPaw.15G127100 Carya illinoinensis HOM05D005975 ORTHO05D007373 2.3e-260 902.1 675 67.7
Glyma.04G152200 Glycine max HOM05D005975 ORTHO05D007373 5.2e-260 901.0 633 69.0
Ca_23135_v3 Cicer arietinum L. HOM05D005975 ORTHO05D007373 6.8e-260 900.6 632 69.8
Glyma.06G210800 Glycine max HOM05D005975 ORTHO05D007373 2.6e-259 898.7 633 69.7
Rhsim08G0136800 Rhododendron simsii HOM05D005975 ORTHO05D007373 3.4e-259 898.3 636 70.0
Lj1g0009400 Lotus japonicus HOM05D005975 ORTHO05D007373 3.7e-258 894.8 640 69.8
Psat1g024880 Pisum sativum HOM05D005975 ORTHO05D007373 4.9e-258 894.4 631 69.4
PSO063G1047 Papaver somniferum HOM05D005975 ORTHO05D007373 1.1e-257 893.3 657 68.8
Glyma.17G121100 Glycine max HOM05D005975 ORTHO05D007373 2.4e-257 892.1 659 66.9
Actinidia31028 Actinidia chinensis HOM05D005975 ORTHO05D007373 5.4e-257 891.0 645 68.4
Peaxi162Scf00015g00726 Petunia axillaris HOM05D005975 ORTHO05D007373 7.0e-257 890.6 651 67.6
CSS0000913 Camellia sinensis var. sinensis HOM05D005975 ORTHO05D007373 2.0e-256 889.0 670 66.7
PSO782G2585 Papaver somniferum HOM05D005975 ORTHO05D007373 2.0e-256 889.0 657 68.5
Hund02524 Selenicereus undatus HOM05D005975 ORTHO05D007373 2.3e-255 885.6 654 68.5
TPR.G10356 Trifolium pratense HOM05D005975 ORTHO05D007373 8.6e-255 883.6 641 68.3
TAR622G0473 Trochodendron aralioides HOM05D005975 ORTHO05D007373 8.6e-255 883.6 659 66.3
SGA_v2.0_scaffold25G10981 Striga asiatica HOM05D005975 ORTHO05D007373 7.3e-254 880.6 637 68.1
ECA232G0421 Erigeron canadensis HOM05D005975 ORTHO05D007373 2.1e-253 879.0 635 68.2
VMungo1215G0359 Vigna mungo HOM05D005975 ORTHO05D007373 3.6e-253 878.2 649 66.7
PGSC0003DMG400005625 Solanum tuberosum HOM05D005975 ORTHO05D007373 1.4e-252 876.3 655 66.9
Nitab4.5_0001599g0180 Nicotiana tabacum HOM05D005975 ORTHO05D007373 1.8e-252 875.9 652 66.9
TAR374G1293 Trochodendron aralioides HOM05D005975 ORTHO05D007373 1.8e-252 875.9 659 66.6
Cc04_g07500 Coffea canephora HOM05D005975 ORTHO05D007373 2.3e-252 875.5 652 66.0
Oeu024324.1 Olea europaea HOM05D005975 ORTHO05D007373 6.8e-252 874.0 632 69.0
MELO3C017289.2 Cucumis melo HOM05D005975 ORTHO05D007373 1.5e-251 872.8 654 67.0
CsaV3_1G003650 Cucumis sativus L. HOM05D005975 ORTHO05D007373 2.6e-251 872.1 653 67.1
Sopen03g038600 Solanum pennellii HOM05D005975 ORTHO05D007373 3.4e-251 871.7 655 66.4
Ah.11g047090 Amaranthus hybridus HOM05D005975 ORTHO05D007373 4.4e-251 871.3 632 67.6
Solyc03g119750.4 Solanum lycopersicum HOM05D005975 ORTHO05D007373 4.4e-251 871.3 655 66.4
DCAR_015134 Daucus carota HOM05D005975 ORTHO05D007373 5.8e-251 870.9 633 69.0
Aqoxy3G03906 Aquilegia oxysepala HOM05D005975 ORTHO05D007373 1.7e-250 869.4 653 66.6
AUR62036958 Chenopodium quinoa HOM05D005975 ORTHO05D007373 2.9e-250 868.6 655 66.9
ClCG06G015000 Citrullus lanatus HOM05D005975 ORTHO05D007373 2.9e-250 868.6 654 66.5
HanXRQChr09g0269781 Helianthus annuus HOM05D005975 ORTHO05D007373 6.4e-250 867.5 638 67.9
AUR62032193 Chenopodium quinoa HOM05D005975 ORTHO05D007373 2.4e-249 865.5 652 66.7
Haze_18619 Corylus avellana HOM05D005975 ORTHO05D007373 2.4e-249 865.5 602 70.8
QL10p022556 Quercus lobata HOM05D005975 ORTHO05D007373 3.2e-249 865.1 606 70.8
Sed0024013 Sechium edule HOM05D005975 ORTHO05D007373 4.1e-249 864.8 653 66.3
Hund10002 Selenicereus undatus HOM05D005975 ORTHO05D007373 2.7e-248 862.1 653 65.2
Nitab4.5_0000410g0070 Nicotiana tabacum HOM05D005975 ORTHO05D007373 3.5e-248 861.7 652 66.3
Dinv38586 Davidia involucrata HOM05D005975 ORTHO05D007373 7.8e-248 860.5 604 70.0
Cpa.g.sc549.1 Carica papaya HOM05D005975 ORTHO05D007373 2.3e-247 859.0 604 71.0
Sc10g0009550 Simmondsia chinensis HOM05D005975 ORTHO05D007373 1.5e-246 856.3 652 65.0
VMungo1309G0041 Vigna mungo HOM05D005975 ORTHO05D007373 1.5e-246 856.3 580 71.7
vmacro17674 Vaccinium macrocarpon HOM05D005975 ORTHO05D007373 8.0e-245 850.5 591 70.2
MBI19_g38388_MAGBIO Magnolia biondii HOM05D005975 ORTHO05D007373 1.8e-244 849.4 646 66.4
arahy.Tifrunner.gnm1.ann1.1K5T8S Arachis hypogaea HOM05D005975 ORTHO05D007373 5.2e-244 847.8 607 69.0
Lsat_1_v5_gn_3_10441 Lactuca sativa HOM05D005975 ORTHO05D007373 4.9e-242 841.3 628 67.2
Migut.I00389 Erythranthe guttata HOM05D005975 ORTHO05D007373 4.6e-240 834.7 665 64.7
Prupe.5G217600 Prunus persica HOM05D005975 ORTHO05D007373 4.6e-240 834.7 523 77.2
EL10Ac5g11254 Beta vulgaris HOM05D005975 ORTHO05D007373 1.9e-238 829.3 607 67.2
Carub.0002s2070 Capsella rubella HOM05D005975 ORTHO05D007373 4.7e-237 824.7 462 89.2
CAN.G438.116 Capsicum annuum HOM05D005975 ORTHO05D007373 2.3e-236 822.4 606 66.7
Lj9A429T54 Lonicera japonica HOM05D005975 ORTHO05D007373 4.0e-236 821.6 603 67.3
MSTRG.22940 Avicennia marina HOM05D005975 ORTHO05D007373 4.6e-232 808.1 608 66.1
Phvul.003G176900 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 1.3e-226 790.0 519 73.2
ATR0753G136 Amborella trichopoda HOM05D005975 ORTHO05D007373 9.3e-225 783.9 721 56.0
SalBow5G4970 Salvia bowleyana HOM05D005975 ORTHO05D007373 6.4e-218 761.1 651 62.1
Os03g0259700 Oryza sativa ssp. japonica HOM05D005975 ORTHO05D007373 1.2e-216 756.9 635 61.9
unitig_22.g6248 Utricularia gibba HOM05D005975 ORTHO05D007373 5.6e-214 748.0 654 59.5
Sabra15G0077800 Salix brachista HOM05D005975 ORTHO05D007373 1.3e-207 726.9 654 59.0
Glyma.05G013100 Glycine max HOM05D005975 ORTHO05D007373 5.5e-201 704.9 618 59.1
SEGI_09157 Sequoiadendron giganteum HOM05D005975 ORTHO05D007373 1.2e-200 703.7 730 50.7
Zm00001eb011310 Zea mays HOM05D005975 ORTHO05D007373 6.2e-197 691.4 556 62.8
Pp3c4_11450 Physcomitrium patens HOM05D005975 ORTHO05D007373 1.8e-196 689.9 749 47.7
Pp3c12_18170 Physcomitrium patens HOM05D005975 ORTHO05D007373 4.1e-196 688.7 751 47.3
COL.COLO4_22722 Corchorus olitorius HOM05D005975 ORTHO05D007373 1.3e-194 683.7 449 74.8
Mapoly0016s0160 Marchantia polymorpha HOM05D005975 ORTHO05D007373 2.5e-190 669.5 532 60.3
AagrBONN_evm.TU.Sc2ySwM_228.4839 Anthoceros agrestis HOM05D005975 ORTHO05D007373 1.3e-189 667.2 818 44.4
SMO367G0788 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 7.2e-185 651.4 604 54.3
CDE05G1454 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 8.0e-160 568.2 524 57.6
Nn3g17719 Nelumbo nucifera HOM05D005975 ORTHO05D007373 4.0e-159 565.8 426 67.4
CBR_g30105 Chara braunii HOM05D005975 ORTHO05D007373 3.4e-158 562.8 548 54.9
TAR622G1340 Trochodendron aralioides HOM05D005975 ORTHO05D007373 7.5e-134 481.9 417 59.0
CDE05G3359 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 1.4e-116 424.5 375 61.1
BcaB05g24817 Brassica carinata HOM05D005975 ORTHO05D007373 2.8e-112 410.2 215 93.5
PSO074G0001 Papaver somniferum HOM05D005975 ORTHO05D007373 3.6e-112 409.8 308 66.2
HPP92_016579 Vanilla planifolia HOM05D005975 ORTHO05D007373 1.9e-108 397.5 312 64.1
arahy.Tifrunner.gnm1.ann1.CEL6SJ Arachis hypogaea HOM05D005975 ORTHO05D007373 2.1e-107 394.0 267 72.3
HPP92_016580 Vanilla planifolia HOM05D005975 ORTHO05D007373 1.3e-88 331.6 238 68.5
Zm00001eb237870 Zea mays HOM05D005975 ORTHO05D007373 1.5e-78 298.1 539 39.3
SMO146G0145 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 5.9e-78 296.2 342 49.1
Zm00001eb078910 Zea mays HOM05D005975 ORTHO05D007373 6.1e-59 233.0 153 70.6
Cre14.g633500 Chlamydomonas reinhardtii HOM05D005975 ORTHO05D007373 3.4e-41 174.1 434 31.3
CDE05G0573 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 2.4e-31 141.4 121 57.0
Nn3g18207 Nelumbo nucifera HOM05D005975 ORTHO05D007373 7.0e-31 139.8 139 51.8
Nn1g03516 Nelumbo nucifera HOM05D005975 ORTHO05D007373 1.8e-10 72.0 49 73.5
Nn4g23789 Nelumbo nucifera HOM05D005975 ORTHO05D007373 6.8e-10 70.1 131 35.1
Cfa019814 Carpinus fangiana HOM05D005975 ORTHO05D007373 1.2e-09 69.3 56 64.3
Dinv38585 Davidia involucrata HOM05D005975 ORTHO05D007373 8.3e-08 63.2 43 72.1
Lj9A429T53 Lonicera japonica HOM05D005975 ORTHO05D007373 4.6e-06 57.4 45 66.7


User provided reference genes

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