Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24817 Brassica carinata HOM05D005975 ORTHO05D007373 4.0e-122 441.4 219 100.0
BcaC03g15468 Brassica carinata HOM05D005975 ORTHO05D007373 8.3e-120 433.7 215 100.0
A02p18950 Brassica napus HOM05D005975 ORTHO05D007373 8.3e-120 433.7 215 100.0
BolC2t09180H Brassica oleracea HOM05D005975 ORTHO05D007373 8.3e-120 433.7 215 100.0
BraA02t06937Z Brassica rapa HOM05D005975 ORTHO05D007373 8.3e-120 433.7 215 100.0
C02p31490 Brassica napus HOM05D005975 ORTHO05D007373 7.0e-119 430.6 215 99.5
BcaB05g24819 Brassica carinata HOM05D005975 ORTHO05D007373 2.2e-112 409.1 215 93.5
Thhalv10018286m.g Eutrema salsugineum HOM05D005975 ORTHO05D007373 1.1e-106 390.2 215 90.7
Sp5g29130 Schrenkiella parvula HOM05D005975 ORTHO05D007373 1.4e-106 389.8 215 88.8
Carub.0002s2070 Capsella rubella HOM05D005975 ORTHO05D007373 6.8e-106 387.5 215 89.8
AL2G33760 Arabidopsis lyrata HOM05D005975 ORTHO05D007373 4.4e-105 384.8 215 89.3
AT1G73930 Arabidopsis thaliana HOM05D005975 ORTHO05D007373 4.4e-105 384.8 215 88.8
CARHR067040 Cardamine hirsuta HOM05D005975 ORTHO05D007373 4.4e-105 384.8 215 89.3
THA.LOC104808292 Tarenaya hassleriana HOM05D005975 ORTHO05D007373 1.7e-101 372.9 215 84.2
FvH4_5g12680 Fragaria vesca HOM05D005975 ORTHO05D007373 1.5e-97 359.8 215 80.5
FAN18G3396 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.5e-97 359.8 215 80.5
PGR083G1175 Punica granatum HOM05D005975 ORTHO05D007373 1.5e-97 359.8 216 80.6
RcHm_v2.0_Chr7g0184651 Rosa chinensis HOM05D005975 ORTHO05D007373 1.5e-97 359.8 215 80.5
Potri.012G060200 Populus trichocarpa HOM05D005975 ORTHO05D007373 7.6e-97 357.5 215 79.1
Potri.015G049900 Populus trichocarpa HOM05D005975 ORTHO05D007373 7.6e-97 357.5 216 79.6
COL.COLO4_22722 Corchorus olitorius HOM05D005975 ORTHO05D007373 9.9e-97 357.1 217 78.3
FAN04G2679 Fragaria x ananassa HOM05D005975 ORTHO05D007373 9.9e-97 357.1 215 80.0
Eucgr.B00701 Eucalyptus grandis HOM05D005975 ORTHO05D007373 1.3e-96 356.7 215 79.5
FAN13G1844 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.7e-96 356.3 215 79.5
Thecc.03G028700 Theobroma cacao HOM05D005975 ORTHO05D007373 2.2e-96 355.9 215 80.0
FAN08G0232 Fragaria x ananassa HOM05D005975 ORTHO05D007373 6.4e-96 354.4 215 79.5
Manes.05G139300 Manihot esculenta HOM05D005975 ORTHO05D007373 6.4e-96 354.4 215 78.6
MD06G1211600 Malus domestica HOM05D005975 ORTHO05D007373 3.2e-95 352.1 215 79.1
Atru.chr9.776 Acer truncatum HOM05D005975 ORTHO05D007373 4.1e-95 351.7 215 78.1
Prupe.5G217600 Prunus persica HOM05D005975 ORTHO05D007373 5.4e-95 351.3 215 77.2
MD14G1222100 Malus domestica HOM05D005975 ORTHO05D007373 7.1e-95 350.9 215 78.1
Sabra12G0043300 Salix brachista HOM05D005975 ORTHO05D007373 7.1e-95 350.9 215 77.2
Haze_18619 Corylus avellana HOM05D005975 ORTHO05D007373 1.2e-94 350.1 215 77.7
QL10p022556 Quercus lobata HOM05D005975 ORTHO05D007373 1.2e-94 350.1 215 77.7
Cpa.g.sc549.1 Carica papaya HOM05D005975 ORTHO05D007373 1.6e-94 349.7 215 80.0
Peaxi162Scf00015g00726 Petunia axillaris HOM05D005975 ORTHO05D007373 1.6e-94 349.7 215 75.8
Actinidia31028 Actinidia chinensis HOM05D005975 ORTHO05D007373 4.6e-94 348.2 215 77.2
TPR.G10356 Trifolium pratense HOM05D005975 ORTHO05D007373 6.0e-94 347.8 215 76.7
Gohir.A11G007000 Gossypium hirsutum HOM05D005975 ORTHO05D007373 1.0e-93 347.1 216 77.3
Gohir.D11G006100 Gossypium hirsutum HOM05D005975 ORTHO05D007373 1.0e-93 347.1 216 77.3
Gorai.007G007400 Gossypium raimondii HOM05D005975 ORTHO05D007373 1.0e-93 347.1 216 77.3
arahy.Tifrunner.gnm1.ann1.1K5T8S Arachis hypogaea HOM05D005975 ORTHO05D007373 1.3e-93 346.7 215 78.1
arahy.Tifrunner.gnm1.ann1.CEL6SJ Arachis hypogaea HOM05D005975 ORTHO05D007373 1.3e-93 346.7 215 78.1
Duzib205G1016 Durio zibethinus HOM05D005975 ORTHO05D007373 1.7e-93 346.3 215 77.7
Ciclev10019197m.g Citrus clementina HOM05D005975 ORTHO05D007373 3.9e-93 345.1 215 78.1
ECA232G0421 Erigeron canadensis HOM05D005975 ORTHO05D007373 3.9e-93 345.1 215 76.3
Nitab4.5_0001599g0180 Nicotiana tabacum HOM05D005975 ORTHO05D007373 3.9e-93 345.1 215 74.9
Psat1g024880 Pisum sativum HOM05D005975 ORTHO05D007373 1.1e-92 343.6 215 76.3
Nitab4.5_0000410g0070 Nicotiana tabacum HOM05D005975 ORTHO05D007373 1.5e-92 343.2 215 74.4
Hund02524 Selenicereus undatus HOM05D005975 ORTHO05D007373 2.5e-92 342.4 216 78.2
Ca_23135_v3 Cicer arietinum L. HOM05D005975 ORTHO05D007373 4.3e-92 341.7 215 75.3
Cc04_g07500 Coffea canephora HOM05D005975 ORTHO05D007373 4.3e-92 341.7 215 74.4
Glyma.04G152200 Glycine max HOM05D005975 ORTHO05D007373 5.6e-92 341.3 215 75.8
Phvul.009G200500 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 7.3e-92 340.9 215 75.3
Solyc03g119750.4 Solanum lycopersicum HOM05D005975 ORTHO05D007373 7.3e-92 340.9 215 74.9
PGSC0003DMG400005625 Solanum tuberosum HOM05D005975 ORTHO05D007373 7.3e-92 340.9 215 74.9
HanXRQChr09g0269781 Helianthus annuus HOM05D005975 ORTHO05D007373 1.2e-91 340.1 215 76.3
CiPaw.15G127100 Carya illinoinensis HOM05D005975 ORTHO05D007373 1.6e-91 339.7 215 76.7
Dinv38586 Davidia involucrata HOM05D005975 ORTHO05D007373 1.6e-91 339.7 215 75.8
Sopen03g038600 Solanum pennellii HOM05D005975 ORTHO05D007373 2.1e-91 339.3 215 74.4
VMungo1309G0041 Vigna mungo HOM05D005975 ORTHO05D007373 2.8e-91 339.0 215 75.3
Lj1g0009400 Lotus japonicus HOM05D005975 ORTHO05D007373 4.7e-91 338.2 215 76.3
CSS0000913 Camellia sinensis var. sinensis HOM05D005975 ORTHO05D007373 6.2e-91 337.8 215 74.9
Hund10002 Selenicereus undatus HOM05D005975 ORTHO05D007373 1.1e-90 337.0 215 75.3
Glyma.17G121100 Glycine max HOM05D005975 ORTHO05D007373 1.4e-90 336.7 215 74.9
Rhsim08G0136800 Rhododendron simsii HOM05D005975 ORTHO05D007373 1.4e-90 336.7 215 74.0
EL10Ac5g11254 Beta vulgaris HOM05D005975 ORTHO05D007373 1.8e-90 336.3 215 76.7
vmacro17674 Vaccinium macrocarpon HOM05D005975 ORTHO05D007373 1.8e-90 336.3 215 74.0
Lalb_Chr12g0197601 Lupinus albus HOM05D005975 ORTHO05D007373 2.4e-90 335.9 215 75.3
Glyma.06G210800 Glycine max HOM05D005975 ORTHO05D007373 6.8e-90 334.3 215 74.4
PSO782G2585 Papaver somniferum HOM05D005975 ORTHO05D007373 6.8e-90 334.3 216 75.9
PSO063G1047 Papaver somniferum HOM05D005975 ORTHO05D007373 8.9e-90 334.0 216 75.5
Phvul.003G176900 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 1.2e-89 333.6 215 75.3
Oeu024324.1 Olea europaea HOM05D005975 ORTHO05D007373 1.5e-89 333.2 215 75.3
Ah.11g047090 Amaranthus hybridus HOM05D005975 ORTHO05D007373 2.0e-89 332.8 215 76.3
Hma1.2p1_0592F.1_g185285 Hydrangea macrophylla HOM05D005975 ORTHO05D007373 2.6e-89 332.4 215 77.2
CAN.G438.116 Capsicum annuum HOM05D005975 ORTHO05D007373 3.4e-89 332.0 215 72.1
SGA_v2.0_scaffold25G10981 Striga asiatica HOM05D005975 ORTHO05D007373 3.4e-89 332.0 215 73.5
AUR62032193 Chenopodium quinoa HOM05D005975 ORTHO05D007373 4.4e-89 331.6 215 76.3
AUR62036958 Chenopodium quinoa HOM05D005975 ORTHO05D007373 4.4e-89 331.6 215 76.7
VMungo1215G0359 Vigna mungo HOM05D005975 ORTHO05D007373 4.4e-89 331.6 218 75.2
Aa31LG4G4220 Aethionema arabicum HOM05D005975 ORTHO05D007373 1.7e-88 329.7 215 79.5
MELO3C017289.2 Cucumis melo HOM05D005975 ORTHO05D007373 2.9e-88 328.9 215 74.9
CsaV3_1G003650 Cucumis sativus L. HOM05D005975 ORTHO05D007373 2.9e-88 328.9 215 74.9
TAR374G1293 Trochodendron aralioides HOM05D005975 ORTHO05D007373 4.9e-88 328.2 215 73.0
ClCG06G015000 Citrullus lanatus HOM05D005975 ORTHO05D007373 2.4e-87 325.9 215 74.4
MBI19_g38388_MAGBIO Magnolia biondii HOM05D005975 ORTHO05D007373 3.2e-87 325.5 216 74.5
Aqoxy3G03906 Aquilegia oxysepala HOM05D005975 ORTHO05D007373 4.2e-87 325.1 215 71.2
Lsat_1_v5_gn_3_10441 Lactuca sativa HOM05D005975 ORTHO05D007373 4.2e-87 325.1 215 73.5
Sed0024013 Sechium edule HOM05D005975 ORTHO05D007373 7.1e-87 324.3 215 74.4
MSTRG.22940 Avicennia marina HOM05D005975 ORTHO05D007373 1.3e-85 320.1 215 70.2
DCAR_015134 Daucus carota HOM05D005975 ORTHO05D007373 2.3e-85 319.3 215 73.0
Migut.I00389 Erythranthe guttata HOM05D005975 ORTHO05D007373 3.9e-85 318.5 216 72.2
TAR622G0473 Trochodendron aralioides HOM05D005975 ORTHO05D007373 3.9e-85 318.5 216 70.8
Sc10g0009550 Simmondsia chinensis HOM05D005975 ORTHO05D007373 1.1e-84 317.0 215 71.2
Lj9A429T54 Lonicera japonica HOM05D005975 ORTHO05D007373 2.5e-84 315.8 215 72.6
GSVIVG01008239001 Vitis vinifera HOM05D005975 ORTHO05D007373 2.5e-84 315.8 215 74.0
unitig_22.g6248 Utricularia gibba HOM05D005975 ORTHO05D007373 3.6e-83 312.0 215 71.2
Os03g0259700 Oryza sativa ssp. japonica HOM05D005975 ORTHO05D007373 9.0e-82 307.4 216 69.0
SalBow5G4970 Salvia bowleyana HOM05D005975 ORTHO05D007373 2.0e-81 306.2 203 72.9
ATR0753G136 Amborella trichopoda HOM05D005975 ORTHO05D007373 3.8e-80 302.0 215 69.3
SEGI_09157 Sequoiadendron giganteum HOM05D005975 ORTHO05D007373 1.1e-79 300.4 219 69.4
Zm00001eb011310 Zea mays HOM05D005975 ORTHO05D007373 3.2e-79 298.9 216 66.7
Mapoly0016s0160 Marchantia polymorpha HOM05D005975 ORTHO05D007373 1.0e-77 293.9 221 64.7
Glyma.05G013100 Glycine max HOM05D005975 ORTHO05D007373 1.7e-77 293.1 215 67.4
TAR622G1340 Trochodendron aralioides HOM05D005975 ORTHO05D007373 3.0e-77 292.4 203 68.5
Pp3c12_18170 Physcomitrium patens HOM05D005975 ORTHO05D007373 1.3e-75 287.0 215 63.7
AagrBONN_evm.TU.Sc2ySwM_228.4839 Anthoceros agrestis HOM05D005975 ORTHO05D007373 2.8e-75 285.8 217 65.9
Pp3c4_11450 Physcomitrium patens HOM05D005975 ORTHO05D007373 2.8e-75 285.8 215 63.3
Sabra15G0077800 Salix brachista HOM05D005975 ORTHO05D007373 4.2e-71 271.9 216 65.3
CBR_g30105 Chara braunii HOM05D005975 ORTHO05D007373 1.4e-63 246.9 258 51.6
HPP92_016580 Vanilla planifolia HOM05D005975 ORTHO05D007373 9.6e-60 234.2 142 75.4
SMO367G0788 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 8.2e-59 231.1 217 56.2
Zm00001eb078910 Zea mays HOM05D005975 ORTHO05D007373 1.1e-58 230.7 148 71.6
Zm00001eb237870 Zea mays HOM05D005975 ORTHO05D007373 4.5e-57 225.3 149 69.8
SMO146G0145 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 1.1e-44 184.1 220 48.2
CDE05G1454 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 2.8e-35 152.9 202 45.0
CDE05G3359 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 4.8e-35 152.1 124 64.5
Nn3g17719 Nelumbo nucifera HOM05D005975 ORTHO05D007373 7.2e-23 111.7 84 70.2
Cre14.g633500 Chlamydomonas reinhardtii HOM05D005975 ORTHO05D007373 8.5e-16 88.2 227 30.0


User provided reference genes

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