Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24816 Brassica carinata HOM05D005829 ORTHO05D007246 6.8e-111 404.1 212 100.0
BcaB05g24818 Brassica carinata HOM05D005829 ORTHO05D007246 6.8e-111 404.1 212 100.0
BcaC03g15467 Brassica carinata HOM05D005829 ORTHO05D007246 3.4e-102 375.2 212 91.5
C02p31470 Brassica napus HOM05D005829 ORTHO05D007246 3.4e-102 375.2 212 91.5
BolC2t09178H Brassica oleracea HOM05D005829 ORTHO05D007246 3.4e-102 375.2 212 91.5
BraA02t06935Z Brassica rapa HOM05D005829 ORTHO05D007246 2.2e-101 372.5 212 91.0
A02p18930 Brassica napus HOM05D005829 ORTHO05D007246 3.5e-99 365.2 215 89.3
Sp5g29090 Schrenkiella parvula HOM05D005829 ORTHO05D007246 4.4e-94 348.2 216 85.2
BcaC08g45615 Brassica carinata HOM05D005829 ORTHO05D007246 3.3e-89 332.0 215 82.3
BcaB03g15734 Brassica carinata HOM05D005829 ORTHO05D007246 3.1e-87 325.5 216 82.4
Thhalv10019131m.g Eutrema salsugineum HOM05D005829 ORTHO05D007246 6.9e-87 324.3 216 82.4
Carub.0002s2066 Capsella rubella HOM05D005829 ORTHO05D007246 1.5e-86 323.2 216 78.2
AL2G33720 Arabidopsis lyrata HOM05D005829 ORTHO05D007246 1.2e-83 313.5 216 78.2
BolC6t38490H Brassica oleracea HOM05D005829 ORTHO05D007246 7.9e-83 310.8 215 81.4
C06p33760 Brassica napus HOM05D005829 ORTHO05D007246 1.5e-81 306.6 215 80.5
A07p29590 Brassica napus HOM05D005829 ORTHO05D007246 3.6e-80 302.0 215 78.6
BraA07t30600Z Brassica rapa HOM05D005829 ORTHO05D007246 8.1e-80 300.8 215 78.6
BcaC03g15466 Brassica carinata HOM05D005829 ORTHO05D007246 1.1e-79 300.4 212 78.3
CARHR067000 Cardamine hirsuta HOM05D005829 ORTHO05D007246 4.9e-77 291.6 218 74.3
Aa31LG4G4200 Aethionema arabicum HOM05D005829 ORTHO05D007246 1.0e-69 267.3 215 66.5
AT1G73885 Arabidopsis thaliana HOM05D005829 ORTHO05D007246 3.9e-66 255.4 212 66.0
THA.LOC104813901 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 1.9e-57 226.5 216 63.0
BcaC09g48855 Brassica carinata HOM05D005829 ORTHO05D007246 2.0e-41 173.3 95 91.6
C01p45190 Brassica napus HOM05D005829 ORTHO05D007246 2.0e-41 173.3 95 91.6
BolC1t04492H Brassica oleracea HOM05D005829 ORTHO05D007246 2.0e-41 173.3 95 91.6
HanXRQChr10g0314971 Helianthus annuus HOM05D005829 ORTHO05D007246 2.0e-41 173.3 196 52.6
Cpa.g.sc13.3 Carica papaya HOM05D005829 ORTHO05D007246 2.8e-40 169.5 215 52.6
Cfa019789 Carpinus fangiana HOM05D005829 ORTHO05D007246 1.2e-38 164.1 223 46.6
Lsat_1_v5_gn_8_146520 Lactuca sativa HOM05D005829 ORTHO05D007246 2.6e-38 162.9 190 49.5
Haze_18659 Corylus avellana HOM05D005829 ORTHO05D007246 5.9e-38 161.8 225 47.1
Atru.chr9.821 Acer truncatum HOM05D005829 ORTHO05D007246 1.3e-37 160.6 228 49.1
Dinv36156 Davidia involucrata HOM05D005829 ORTHO05D007246 2.2e-37 159.8 225 50.2
Manes.01G012500 Manihot esculenta HOM05D005829 ORTHO05D007246 2.9e-37 159.5 220 49.5
GSVIVG01008273001 Vitis vinifera HOM05D005829 ORTHO05D007246 2.9e-37 159.5 187 49.7
Duzib084G1006 Durio zibethinus HOM05D005829 ORTHO05D007246 3.8e-37 159.1 173 54.9
PGR083G1885 Punica granatum HOM05D005829 ORTHO05D007246 6.5e-37 158.3 219 49.3
Manes.05G145805 Manihot esculenta HOM05D005829 ORTHO05D007246 1.1e-36 157.5 220 51.8
Ciclev10022208m.g Citrus clementina HOM05D005829 ORTHO05D007246 1.5e-36 157.1 220 46.4
Migut.I00369 Erythranthe guttata HOM05D005829 ORTHO05D007246 1.5e-36 157.1 190 53.2
ClCG06G014890 Citrullus lanatus HOM05D005829 ORTHO05D007246 1.9e-36 156.8 223 48.4
Gohir.A09G177500 Gossypium hirsutum HOM05D005829 ORTHO05D007246 1.9e-36 156.8 217 46.5
Actinidia06971 Actinidia chinensis HOM05D005829 ORTHO05D007246 2.5e-36 156.4 216 50.0
Sabra15G0075500 Salix brachista HOM05D005829 ORTHO05D007246 3.2e-36 156.0 218 46.8
Duzib068G0473 Durio zibethinus HOM05D005829 ORTHO05D007246 4.2e-36 155.6 221 47.5
Potri.015G053800 Populus trichocarpa HOM05D005829 ORTHO05D007246 4.2e-36 155.6 222 44.1
ECA234G2972 Erigeron canadensis HOM05D005829 ORTHO05D007246 7.2e-36 154.8 173 52.6
Gohir.D09G173000 Gossypium hirsutum HOM05D005829 ORTHO05D007246 9.4e-36 154.5 217 46.1
Cc04_g07210 Coffea canephora HOM05D005829 ORTHO05D007246 1.2e-35 154.1 188 52.1
Hund02393 Selenicereus undatus HOM05D005829 ORTHO05D007246 2.1e-35 153.3 215 46.0
Gorai.006G194900 Gossypium raimondii HOM05D005829 ORTHO05D007246 2.7e-35 152.9 217 45.6
QL10p025073 Quercus lobata HOM05D005829 ORTHO05D007246 4.7e-35 152.1 223 48.4
Thecc.03G033800 Theobroma cacao HOM05D005829 ORTHO05D007246 6.1e-35 151.8 232 45.7
CSS0021100 Camellia sinensis var. sinensis HOM05D005829 ORTHO05D007246 1.4e-34 150.6 171 53.8
CsaV3_1G003750 Cucumis sativus L. HOM05D005829 ORTHO05D007246 1.8e-34 150.2 222 46.8
CiPaw.15G129500 Carya illinoinensis HOM05D005829 ORTHO05D007246 2.3e-34 149.8 220 45.5
TAR629G3023 Trochodendron aralioides HOM05D005829 ORTHO05D007246 6.7e-34 148.3 214 44.9
Oeu046995.1 Olea europaea HOM05D005829 ORTHO05D007246 8.8e-34 147.9 190 48.4
MSTRG.11323 Avicennia marina HOM05D005829 ORTHO05D007246 1.1e-33 147.5 193 49.7
Eucgr.K02215 Eucalyptus grandis HOM05D005829 ORTHO05D007246 1.1e-33 147.5 218 48.2
MELO3C017300.2 Cucumis melo HOM05D005829 ORTHO05D007246 2.6e-33 146.4 223 47.5
Oeu006380.1 Olea europaea HOM05D005829 ORTHO05D007246 4.4e-33 145.6 194 47.4
RcHm_v2.0_Chr7g0185261 Rosa chinensis HOM05D005829 ORTHO05D007246 9.7e-33 144.4 218 49.1
Aqoxy3G00323 Aquilegia oxysepala HOM05D005829 ORTHO05D007246 1.3e-32 144.1 204 45.1
arahy.Tifrunner.gnm1.ann1.K96EGP Arachis hypogaea HOM05D005829 ORTHO05D007246 1.3e-32 144.1 222 45.5
PSO017G1947 Papaver somniferum HOM05D005829 ORTHO05D007246 1.3e-32 144.1 222 43.2
Sed0000228 Sechium edule HOM05D005829 ORTHO05D007246 1.3e-32 144.1 177 52.5
TWI15G0782 Tripterygium wilfordii HOM05D005829 ORTHO05D007246 1.7e-32 143.7 173 50.9
PSO478G3740 Papaver somniferum HOM05D005829 ORTHO05D007246 2.2e-32 143.3 214 46.3
Solyc06g069170.4 Solanum lycopersicum HOM05D005829 ORTHO05D007246 8.2e-32 141.4 117 65.8
EL10Ac5g11432 Beta vulgaris HOM05D005829 ORTHO05D007246 1.1e-31 141.0 226 42.9
Nitab4.5_0011561g0030 Nicotiana tabacum HOM05D005829 ORTHO05D007246 1.1e-31 141.0 122 61.5
CANSAT21G0600 Cannabis sativa HOM05D005829 ORTHO05D007246 1.4e-31 140.6 224 43.3
FAN04G2288 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.4e-31 140.6 219 43.4
Potri.015G054100 Populus trichocarpa HOM05D005829 ORTHO05D007246 1.4e-31 140.6 92 73.9
PGSC0003DMG400004051 Solanum tuberosum HOM05D005829 ORTHO05D007246 1.4e-31 140.6 115 66.1
FAN13G0492 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.8e-31 140.2 219 43.4
Lalb_Chr14g0371231 Lupinus albus HOM05D005829 ORTHO05D007246 3.1e-31 139.4 122 60.7
Nitab4.5_0010801g0020 Nicotiana tabacum HOM05D005829 ORTHO05D007246 4.1e-31 139.0 193 46.1
Sc12g0006790 Simmondsia chinensis HOM05D005829 ORTHO05D007246 4.1e-31 139.0 212 42.5
FAN08G3097 Fragaria x ananassa HOM05D005829 ORTHO05D007246 5.3e-31 138.7 219 45.2
FAN18G3094 Fragaria x ananassa HOM05D005829 ORTHO05D007246 5.3e-31 138.7 219 43.8
Sopen06g026440 Solanum pennellii HOM05D005829 ORTHO05D007246 7.0e-31 138.3 199 47.7
CAN.G423.7 Capsicum annuum HOM05D005829 ORTHO05D007246 9.1e-31 137.9 104 68.3
DCAR_023199 Daucus carota HOM05D005829 ORTHO05D007246 9.1e-31 137.9 92 71.7
FvH4_5g12290 Fragaria vesca HOM05D005829 ORTHO05D007246 9.1e-31 137.9 219 44.7
FAN18G2130 Fragaria x ananassa HOM05D005829 ORTHO05D007246 9.1e-31 137.9 219 44.7
CDE05G0659 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 2.7e-30 136.3 189 41.3
Peaxi162Scf00013g00945 Petunia axillaris HOM05D005829 ORTHO05D007246 7.7e-30 134.8 128 56.2
Prupe.5G220500 Prunus persica HOM05D005829 ORTHO05D007246 7.7e-30 134.8 217 47.0
ATR0665G268 Amborella trichopoda HOM05D005829 ORTHO05D007246 3.8e-29 132.5 181 48.1
MD14G1226000 Malus domestica HOM05D005829 ORTHO05D007246 8.5e-29 131.3 221 43.9
Rhsim13G0208500 Rhododendron simsii HOM05D005829 ORTHO05D007246 5.5e-28 128.6 250 40.8
MD06G1215200 Malus domestica HOM05D005829 ORTHO05D007246 7.2e-28 128.3 224 42.0
unitig_749.g13417 Utricularia gibba HOM05D005829 ORTHO05D007246 1.6e-27 127.1 91 67.0
arahy.Tifrunner.gnm1.ann1.SID7TX Arachis hypogaea HOM05D005829 ORTHO05D007246 2.1e-27 126.7 252 40.1
Ah.11g045030 Amaranthus hybridus HOM05D005829 ORTHO05D007246 4.7e-27 125.6 92 66.3
CDE11G0392 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 4.7e-27 125.6 189 41.8
vmacro04041 Vaccinium macrocarpon HOM05D005829 ORTHO05D007246 6.1e-27 125.2 267 39.3
Os03g0710600 Oryza sativa ssp. japonica HOM05D005829 ORTHO05D007246 8.8e-26 121.3 218 41.3
SEGI_06072 Sequoiadendron giganteum HOM05D005829 ORTHO05D007246 1.5e-25 120.6 88 62.5
SGA_v2.0_scaffold25G10988 Striga asiatica HOM05D005829 ORTHO05D007246 1.5e-25 120.6 228 39.0
Zm00001eb216440 Zea mays HOM05D005829 ORTHO05D007246 1.5e-25 120.6 127 52.8
Lj2g0004175 Lotus japonicus HOM05D005829 ORTHO05D007246 2.6e-25 119.8 212 39.2
Zm00001eb054790 Zea mays HOM05D005829 ORTHO05D007246 2.6e-25 119.8 125 52.8
Nn1g06955 Nelumbo nucifera HOM05D005829 ORTHO05D007246 3.4e-25 119.4 201 44.3
Ca_25501_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 4.4e-25 119.0 209 40.2
HPP92_013263 Vanilla planifolia HOM05D005829 ORTHO05D007246 4.4e-25 119.0 179 41.9
HPP92_013214 Vanilla planifolia HOM05D005829 ORTHO05D007246 2.8e-24 116.3 172 42.4
TPR.G35237 Trifolium pratense HOM05D005829 ORTHO05D007246 1.0e-21 107.8 87 60.9
Ca_00264_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 1.3e-21 107.5 202 38.1
THA.LOC104813291 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 2.9e-21 106.3 69 81.2
Medtr6g084620 Medicago truncatula HOM05D005829 ORTHO05D007246 5.5e-20 102.1 214 40.7
AagrBONN_evm.TU.Sc2ySwM_228.1174 Anthoceros agrestis HOM05D005829 ORTHO05D007246 2.7e-19 99.8 104 53.8
AagrBONN_evm.TU.Sc2ySwM_228.2224 Anthoceros agrestis HOM05D005829 ORTHO05D007246 2.7e-19 99.8 104 53.8
Gohir.A08G094610 Gossypium hirsutum HOM05D005829 ORTHO05D007246 6.8e-18 95.1 203 39.4
FAN14G0369 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.2e-17 94.4 60 71.7
Mapoly0028s0124 Marchantia polymorpha HOM05D005829 ORTHO05D007246 2.4e-15 86.7 89 43.8
BolC2t09172H Brassica oleracea HOM05D000194 ORTHO05D007246 2.0e-14 83.6 71 70.4
BcaC03g15457 Brassica carinata HOM05D000194 ORTHO05D000069 5.9e-14 82.0 59 81.4
AUR62025855 Chenopodium quinoa HOM05D005829 ORTHO05D007246 7.7e-14 81.6 59 69.5
AUR62029856 Chenopodium quinoa HOM05D005829 ORTHO05D007246 7.7e-14 81.6 59 69.5
A05p27070 Brassica napus HOM05D005829 ORTHO05D007246 5.6e-12 75.5 63 65.1
Pp3c4_12650 Physcomitrium patens HOM05D005829 ORTHO05D007246 2.1e-11 73.6 76 50.0
Pp3c4_12780 Physcomitrium patens HOM05D005829 ORTHO05D007246 2.1e-11 73.6 76 50.0
COL.COLO4_04672 Corchorus olitorius HOM05D005829 ORTHO05D007246 3.6e-11 72.8 163 38.0
Actinidia24460 Actinidia chinensis HOM05D005829 ORTHO05D007246 6.8e-10 68.6 38 73.7
Nn3g17806 Nelumbo nucifera HOM05D005829 ORTHO05D007246 3.4e-09 66.2 135 37.0
SMO241G0040 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 6.4e-08 62.0 133 33.8
SMO232G0029 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 7.0e-07 58.5 68 45.6


User provided reference genes

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