Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24812 Brassica carinata HOM05D003094 ORTHO05D003482 1.1e-96 357.1 243 100.0
BraA02t06932Z Brassica rapa HOM05D003094 ORTHO05D003482 1.5e-50 203.8 146 80.1
C02p31410 Brassica napus HOM05D003094 ORTHO05D003482 2.0e-50 203.4 146 82.9
A02p18880 Brassica napus HOM05D003094 ORTHO05D003482 1.2e-47 194.1 141 81.6
BcaC03g15460 Brassica carinata HOM05D003094 ORTHO05D003482 3.6e-47 192.6 129 84.5
BolC2t09174H Brassica oleracea HOM05D003094 ORTHO05D003482 3.6e-47 192.6 129 84.5
Thhalv10019822m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 7.0e-43 178.3 150 72.7
AL2G33580 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 3.2e-40 169.5 248 56.5
Sp5g28960 Schrenkiella parvula HOM05D003094 ORTHO05D003482 1.4e-38 164.1 150 69.3
AT1G73770 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 4.0e-30 136.0 171 52.6
Carub.0002s2052 Capsella rubella HOM05D003094 ORTHO05D003482 8.8e-30 134.8 150 54.0
CARHR066840 Cardamine hirsuta HOM05D003094 ORTHO05D003482 1.5e-29 134.0 256 47.7
Aa31LG4G4100 Aethionema arabicum HOM05D003094 ORTHO05D003482 1.6e-23 114.0 144 52.1
THA.LOC104812151 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 3.6e-15 86.3 112 50.0
Atru.chr9.906 Acer truncatum HOM05D003094 ORTHO05D003482 9.8e-13 78.2 131 42.0
Dinv09627 Davidia involucrata HOM05D003094 ORTHO05D003482 6.4e-12 75.5 154 38.3
Gohir.A07G059300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 6.4e-12 75.5 129 41.9
Gorai.001G067600 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.1e-11 74.7 89 50.6
Duzib084G0458 Durio zibethinus HOM05D003094 ORTHO05D003482 1.4e-11 74.3 100 46.0
Dinv07353 Davidia involucrata HOM05D003094 ORTHO05D003482 2.4e-11 73.6 154 37.7
Gohir.D07G064100 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.2e-11 73.2 89 49.4
TWI81G0976 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 4.1e-11 72.8 139 39.6
AL3G31470 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 5.4e-11 72.4 162 36.4
Ah.11g047710 Amaranthus hybridus HOM05D003094 ORTHO05D003482 7.0e-11 72.0 77 54.5
AUR62042498 Chenopodium quinoa HOM05D003094 ORTHO05D003482 7.0e-11 72.0 160 35.6
PSO063G0897 Papaver somniferum HOM05D003094 ORTHO05D003482 7.0e-11 72.0 145 37.2
PSO017G6706 Papaver somniferum HOM05D003094 ORTHO05D003482 9.2e-11 71.6 145 37.9
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 1.2e-10 71.2 165 33.3
Dinv17506 Davidia involucrata HOM05D003094 ORTHO05D003482 1.6e-10 70.9 155 38.7
AT3G18240 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 2.7e-10 70.1 159 35.8
CANSAT80G1577 Cannabis sativa HOM05D003094 ORTHO05D003482 2.7e-10 70.1 143 37.1
Carub.0003s1800 Capsella rubella HOM05D003094 ORTHO05D003482 2.7e-10 70.1 161 32.9
MELO3C002109.2 Cucumis melo HOM05D003094 ORTHO05D003482 2.7e-10 70.1 96 44.8
CsaV3_1G006930 Cucumis sativus L. HOM05D003094 ORTHO05D003482 6.0e-10 68.9 125 37.6
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 1.3e-09 67.8 151 39.1
Hund02353 Selenicereus undatus HOM05D003094 ORTHO05D003482 1.3e-09 67.8 136 35.3
EL10Ac5g11481 Beta vulgaris HOM05D003094 ORTHO05D003482 1.7e-09 67.4 136 40.4
Hund11930 Selenicereus undatus HOM05D003094 ORTHO05D003482 2.3e-09 67.0 125 36.8
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.0e-09 66.6 173 35.8
EL10Ac7g16627 Beta vulgaris HOM05D003094 ORTHO05D003482 3.9e-09 66.2 177 33.9
COL.COLO4_38537 Corchorus olitorius HOM05D003094 ORTHO05D003482 3.9e-09 66.2 56 57.1
Gorai.002G151500 Gossypium raimondii HOM05D003094 ORTHO05D003482 3.9e-09 66.2 137 36.5
Actinidia35101 Actinidia chinensis HOM05D003094 ORTHO05D003482 5.0e-09 65.9 126 36.5
TWI60G1358 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 6.6e-09 65.5 162 34.0
Actinidia19943 Actinidia chinensis HOM05D003094 ORTHO05D003482 8.6e-09 65.1 159 34.6
Cpa.g.sc3.463 Carica papaya HOM05D003094 ORTHO05D003482 8.6e-09 65.1 138 36.2
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 8.6e-09 65.1 173 34.7
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 1.1e-08 64.7 162 33.3
AT4G21460 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 1.5e-08 64.3 136 35.3
EL10Ac4g10181 Beta vulgaris HOM05D003094 ORTHO05D003482 1.5e-08 64.3 177 33.3
Thhalv10020806m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 1.5e-08 64.3 95 36.8
Actinidia36579 Actinidia chinensis HOM05D003094 ORTHO05D003482 1.9e-08 63.9 155 34.2
CARHR093590 Cardamine hirsuta HOM05D003094 ORTHO05D003482 1.9e-08 63.9 175 29.7
AUR62040348 Chenopodium quinoa HOM05D003094 ORTHO05D003482 1.9e-08 63.9 160 33.8
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.9e-08 63.9 134 38.1
MBI16_g44830_MAGBIO Magnolia biondii HOM05D003094 ORTHO05D003482 1.9e-08 63.9 152 34.2
Rhsim12G0141600 Rhododendron simsii HOM05D003094 ORTHO05D003482 1.9e-08 63.9 65 50.8
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 1.9e-08 63.9 79 46.8
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 2.5e-08 63.5 151 37.1
Solyc03g119170.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 2.5e-08 63.5 88 42.0
Sopen03g038060 Solanum pennellii HOM05D003094 ORTHO05D003482 2.5e-08 63.5 88 42.0
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 3.3e-08 63.2 85 47.1
CiPaw.16G089200 Carya illinoinensis HOM05D003094 ORTHO05D003482 3.3e-08 63.2 159 33.3
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.3e-08 63.2 173 34.1
Sed0019035 Sechium edule HOM05D003094 ORTHO05D003482 3.3e-08 63.2 90 43.3
vmacro16434 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 3.3e-08 63.2 125 40.0
PGSC0003DMG402005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 4.3e-08 62.8 86 41.9
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 5.6e-08 62.4 173 34.1
Nitab4.5_0001986g0070 Nicotiana tabacum HOM05D003094 ORTHO05D003482 5.6e-08 62.4 139 30.2
THA.LOC104820380 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 5.6e-08 62.4 165 32.1
VMungo0251G1973 Vigna mungo HOM05D003094 ORTHO05D003482 5.6e-08 62.4 80 43.8
MD06G1220600 Malus domestica HOM05D003094 ORTHO05D003482 7.3e-08 62.0 148 33.1
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 9.5e-08 61.6 164 34.8
Prupe.5G225000 Prunus persica HOM05D003094 ORTHO05D003482 9.5e-08 61.6 132 34.1
TAR374G0733 Trochodendron aralioides HOM05D003094 ORTHO05D003482 9.5e-08 61.6 139 31.7
Cc04_g06860 Coffea canephora HOM05D003094 ORTHO05D003482 1.2e-07 61.2 81 42.0
Sc10g0009380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 1.2e-07 61.2 99 41.4
TPR.G35824 Trifolium pratense HOM05D003094 ORTHO05D003482 1.2e-07 61.2 137 35.0
TAR374G0309 Trochodendron aralioides HOM05D003094 ORTHO05D003482 1.2e-07 61.2 139 31.7
BolC5t33491H Brassica oleracea HOM05D003094 ORTHO05D003482 1.6e-07 60.8 81 39.5
FAN14G2495 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.6e-07 60.8 83 39.8
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.6e-07 60.8 173 33.5
Phvul.002G182800 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 1.6e-07 60.8 79 46.8
C05p47760 Brassica napus HOM05D003094 ORTHO05D003482 2.1e-07 60.5 81 39.5
Gorai.003G056600 Gossypium raimondii HOM05D003094 ORTHO05D003482 2.1e-07 60.5 82 46.3
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 2.1e-07 60.5 163 33.7
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 2.8e-07 60.1 79 44.3
Ciclev10023622m.g Citrus clementina HOM05D003094 ORTHO05D003482 2.8e-07 60.1 81 44.4
FvH4_6g26830 Fragaria vesca HOM05D003094 ORTHO05D003482 2.8e-07 60.1 167 31.7
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 2.8e-07 60.1 133 38.3
Peaxi162Scf00683g00019 Petunia axillaris HOM05D003094 ORTHO05D003482 2.8e-07 60.1 146 34.9
BcaC05g28648 Brassica carinata HOM05D003094 ORTHO05D003482 3.6e-07 59.7 81 39.5
BraA05t21983Z Brassica rapa HOM05D003094 ORTHO05D003482 3.6e-07 59.7 163 31.9
Nitab4.5_0004955g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 3.6e-07 59.7 86 37.2
Peaxi162Scf00683g00159 Petunia axillaris HOM05D003094 ORTHO05D003482 3.6e-07 59.7 125 30.4
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 3.6e-07 59.7 85 44.7
A05p31440 Brassica napus HOM05D003094 ORTHO05D003482 4.7e-07 59.3 163 31.9
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 4.7e-07 59.3 76 44.7
FAN02G1016 Fragaria x ananassa HOM05D003094 ORTHO05D003482 4.7e-07 59.3 83 38.6
FAN05G2182 Fragaria x ananassa HOM05D003094 ORTHO05D003482 4.7e-07 59.3 83 38.6
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 4.7e-07 59.3 79 44.3
Gorai.001G159100 Gossypium raimondii HOM05D003094 ORTHO05D003482 4.7e-07 59.3 60 48.3
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 4.7e-07 59.3 81 45.7
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 4.7e-07 59.3 119 36.1
arahy.Tifrunner.gnm1.ann1.2IG2A1 Arachis hypogaea HOM05D003094 ORTHO05D003482 6.2e-07 58.9 150 34.7
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 6.2e-07 58.9 164 32.3
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 6.2e-07 58.9 169 30.2
Cpa.g.sc51.5 Carica papaya HOM05D003094 ORTHO05D003482 8.0e-07 58.5 158 34.2
CDE11G0955 Ceratophyllum demersum HOM05D003094 ORTHO05D003482 8.0e-07 58.5 160 33.1
Potri.015G044100 Populus trichocarpa HOM05D003094 ORTHO05D003482 8.0e-07 58.5 168 35.1
TPR.G5116 Trifolium pratense HOM05D003094 ORTHO05D003482 8.0e-07 58.5 140 35.0
Gohir.D10G153150 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.1e-06 58.2 65 49.2
Sc04g0003380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 1.1e-06 58.2 96 40.6
Solyc03g119160.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 1.1e-06 58.2 101 39.6
Eucgr.K02236 Eucalyptus grandis HOM05D003094 ORTHO05D003482 1.4e-06 57.8 85 44.7
Gorai.012G098500 Gossypium raimondii HOM05D000575 ORTHO05D003482 1.4e-06 57.8 65 49.2
Oeu052057.1 Olea europaea HOM05D003094 ORTHO05D003482 1.4e-06 57.8 169 32.5
PGSC0003DMG401005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 1.4e-06 57.8 96 40.6
MSTRG.4516 Avicennia marina HOM05D003094 ORTHO05D003482 1.8e-06 57.4 101 30.7
Lj9A424T34 Lonicera japonica HOM05D003094 ORTHO05D003482 1.8e-06 57.4 75 42.7
Lj4g0013095 Lotus japonicus HOM05D003094 ORTHO05D003482 1.8e-06 57.4 117 35.0
SHI53281 Sapria himalayana HOM05D003094 ORTHO05D003482 1.8e-06 57.4 165 30.9
unitig_21.g20424 Utricularia gibba HOM05D003094 ORTHO05D003482 1.8e-06 57.4 165 32.1
ATR0757G079 Amborella trichopoda HOM05D003094 ORTHO05D003482 2.3e-06 57.0 83 39.8
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 2.3e-06 57.0 162 31.5
ECA233G5083 Erigeron canadensis HOM05D003094 ORTHO05D003482 2.3e-06 57.0 79 45.6
Nitab4.5_0001986g0080 Nicotiana tabacum HOM05D003094 ORTHO05D003482 2.3e-06 57.0 81 43.2
Sp3g16360 Schrenkiella parvula HOM05D003094 ORTHO05D003482 2.3e-06 57.0 81 35.8
CsaV3_1G004020 Cucumis sativus L. HOM05D003094 ORTHO05D003482 3.1e-06 56.6 79 41.8
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 3.1e-06 56.6 146 33.6
SalBow7G3604 Salvia bowleyana HOM05D003094 ORTHO05D003482 3.1e-06 56.6 81 39.5
Migut.D00778 Erythranthe guttata HOM05D003094 ORTHO05D003482 4.0e-06 56.2 81 40.7
FvH4_5g16690 Fragaria vesca HOM05D003094 ORTHO05D003482 4.0e-06 56.2 72 41.7
Gohir.D05G318800 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.0e-06 56.2 60 48.3
Manes.01G015200 Manihot esculenta HOM05D003094 ORTHO05D003482 4.0e-06 56.2 66 43.9
PGR044G0078 Punica granatum HOM05D003094 ORTHO05D003482 4.0e-06 56.2 165 35.2
arahy.Tifrunner.gnm1.ann1.D1K70W Arachis hypogaea HOM05D003094 ORTHO05D003482 5.2e-06 55.8 154 33.1
Gohir.A02G112001 Gossypium hirsutum HOM05D003094 ORTHO05D003482 5.2e-06 55.8 65 47.7
RcHm_v2.0_Chr2g0128201 Rosa chinensis HOM05D003094 ORTHO05D003482 5.2e-06 55.8 172 30.8
ClCG04G010900 Citrullus lanatus HOM05D003094 ORTHO05D003482 6.8e-06 55.5 90 37.8
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 6.8e-06 55.5 164 33.5
FAN18G0043 Fragaria x ananassa HOM05D003094 ORTHO05D003482 6.8e-06 55.5 107 36.4
Oeu029034.1 Olea europaea HOM05D003094 ORTHO05D003482 8.9e-06 55.1 79 32.9
vmacro07219 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 8.9e-06 55.1 83 43.4


User provided reference genes

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