Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24703 Brassica carinata HOM05D007628 ORTHO05D007342 8.4e-41 169.9 82 100.0
BcaC03g15330 Brassica carinata HOM05D007628 ORTHO05D007342 2.8e-36 154.8 82 87.8
C02p29350 Brassica napus HOM05D007628 ORTHO05D007342 2.8e-36 154.8 82 87.8
BolC2t08986H Brassica oleracea HOM05D007628 ORTHO05D007342 2.8e-36 154.8 82 87.8
BraA02t06812Z Brassica rapa HOM05D007628 ORTHO05D007342 1.1e-35 152.9 82 86.6
AT1G72060 Arabidopsis thaliana HOM05D007628 ORTHO05D007342 9.9e-34 146.4 82 80.5
CARHR064880 Cardamine hirsuta HOM05D007628 ORTHO05D007342 1.9e-32 142.1 82 81.7
Carub.0002s1884 Capsella rubella HOM05D007628 ORTHO05D007342 2.3e-30 135.2 79 82.3
Aa31LG4G8570 Aethionema arabicum HOM05D007628 ORTHO05D007342 6.2e-28 127.1 79 75.9
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 1.6e-20 102.4 69 69.6
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 6.9e-19 97.1 69 65.2
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 2.0e-18 95.5 73 60.3
Manes.18G103800 Manihot esculenta HOM05D007628 ORTHO05D007342 1.0e-17 93.2 63 66.7
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 2.2e-17 92.0 49 77.6
Manes.18G104000 Manihot esculenta HOM05D007628 ORTHO05D007342 2.2e-17 92.0 49 77.6
CiPaw.08G002000 Carya illinoinensis HOM05D007628 ORTHO05D007342 3.8e-17 91.3 73 63.0
THA.LOC104800123 Tarenaya hassleriana HOM05D007628 ORTHO05D007342 5.5e-16 87.4 79 51.9
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 1.6e-15 85.9 71 54.9
Potri.019G080600 Populus trichocarpa HOM05D007628 ORTHO05D007342 6.0e-15 84.0 69 56.5
Zm00001eb127310 Zea mays HOM05D007628 ORTHO05D007342 6.0e-15 84.0 82 52.4
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 1.3e-14 82.8 80 50.0
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 1.8e-14 82.4 72 56.9
Cc10_g10200 Coffea canephora HOM05D007628 ORTHO05D007342 5.1e-14 80.9 73 54.8
Ah.06g183420 Amaranthus hybridus HOM05D007628 ORTHO05D007342 7.4e-13 77.0 49 63.3
GSVIVG01023245001 Vitis vinifera HOM05D007628 ORTHO05D007342 7.4e-13 77.0 69 53.6
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 9.6e-13 76.6 79 49.4
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 9.6e-13 76.6 79 49.4
Duzib177G0741 Durio zibethinus HOM05D007628 ORTHO05D007342 3.7e-12 74.7 67 53.7
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 6.2e-12 73.9 79 50.6
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 6.2e-12 73.9 79 50.6
Sc16g0006710 Simmondsia chinensis HOM05D007628 ORTHO05D007342 8.2e-12 73.6 72 52.8
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 4.0e-11 71.2 74 51.4
Cc10_g10180 Coffea canephora HOM05D013878 ORTHO05D007342 5.3e-11 70.9 72 48.6
CSS0046525 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 2.6e-10 68.6 50 54.0
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 3.4e-10 68.2 72 45.8
SHI05836 Sapria himalayana HOM05D007628 ORTHO05D007342 5.8e-10 67.4 67 53.7
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.7e-09 65.9 72 44.4
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 2.9e-09 65.1 75 48.0
CSS0008166 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 3.8e-09 64.7 56 50.0
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 6.5e-09 63.9 72 44.4
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 1.9e-08 62.4 76 47.4
Rhsim11G0055100 Rhododendron simsii HOM05D007628 ORTHO05D007342 1.9e-08 62.4 69 50.7
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 1.9e-08 62.4 75 44.0
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 3.2e-08 61.6 82 41.5
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 3.2e-08 61.6 75 45.3
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 3.2e-08 61.6 74 40.5
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 4.2e-08 61.2 79 40.5
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 4.2e-08 61.2 76 46.1
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 5.5e-08 60.8 77 45.5
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 9.3e-08 60.1 75 44.0
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 9.3e-08 60.1 75 44.0
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 9.3e-08 60.1 74 44.6
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.2e-07 59.7 74 44.6
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 1.2e-07 59.7 74 43.2
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 2.1e-07 58.9 75 42.7
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 2.7e-07 58.5 83 41.0
AUR62022642 Chenopodium quinoa HOM05D007628 ORTHO05D007342 3.5e-07 58.2 80 45.0
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 3.5e-07 58.2 83 43.4
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 3.5e-07 58.2 77 45.5
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 3.5e-07 58.2 74 47.3
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 4.6e-07 57.8 80 42.5
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 4.6e-07 57.8 83 47.0
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 6.1e-07 57.4 74 41.9
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 6.1e-07 57.4 48 54.2
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 6.1e-07 57.4 71 46.5
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 7.9e-07 57.0 74 43.2
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 7.9e-07 57.0 74 43.2
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 7.9e-07 57.0 77 44.2
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 7.9e-07 57.0 77 44.2
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 1.0e-06 56.6 74 44.6
AUR62004619 Chenopodium quinoa HOM05D007628 ORTHO05D007342 1.8e-06 55.8 80 43.8
Ah.09g230940 Amaranthus hybridus HOM05D007628 ORTHO05D007342 2.3e-06 55.5 51 54.9
FvH4_5g32170 Fragaria vesca HOM05D007628 ORTHO05D007342 2.3e-06 55.5 67 46.3
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 2.3e-06 55.5 68 45.6
SalBow7G0776 Salvia bowleyana HOM05D007628 ORTHO05D007342 5.1e-06 54.3 40 60.0
Hund27101 Selenicereus undatus HOM05D007628 ORTHO05D007342 6.7e-06 53.9 49 44.9
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 8.7e-06 53.5 74 39.2
Rhsim06G0114400 Rhododendron simsii HOM05D007628 ORTHO05D007342 8.7e-06 53.5 73 41.1


User provided reference genes

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