Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 5.1e-295 1016.9 490 100.0
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 6.5e-282 973.4 490 95.5
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 1.4e-281 972.2 490 94.9
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 1.8e-279 965.3 506 92.7
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 7.0e-268 926.8 490 90.2
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 1.5e-265 919.1 493 90.1
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 2.4e-260 901.7 493 88.0
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 4.5e-259 897.5 493 87.8
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 2.0e-251 872.1 491 84.3
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 1.5e-238 829.3 425 92.7
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 2.0e-214 749.2 402 88.8
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 1.8e-194 682.9 490 67.1
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 1.7e-189 666.4 485 66.2
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 3.5e-187 658.7 450 68.9
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 5.7e-185 651.4 443 69.8
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 7.4e-185 651.0 494 64.2
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 2.2e-184 649.4 479 64.7
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 2.8e-184 649.0 483 63.8
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 4.8e-184 648.3 493 64.1
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 4.8e-184 648.3 484 66.1
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 1.1e-183 647.1 528 60.4
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 1.8e-183 646.4 491 64.4
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 4.1e-183 645.2 479 64.1
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 9.0e-183 644.0 492 62.4
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 2.6e-182 642.5 508 62.2
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 3.4e-182 642.1 427 70.0
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 5.9e-182 641.3 488 64.1
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 7.7e-182 641.0 480 64.6
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 1.9e-180 636.3 483 64.6
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 7.9e-179 630.9 490 61.6
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 1.4e-178 630.2 493 61.1
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 2.3e-178 629.4 430 68.4
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 5.1e-178 628.2 465 64.1
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 6.7e-178 627.9 487 61.6
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 1.1e-177 627.1 485 61.9
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 2.0e-177 626.3 467 63.2
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 3.3e-177 625.5 428 69.4
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 4.3e-177 625.2 491 61.9
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 5.7e-177 624.8 479 63.3
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 1.3e-176 623.6 477 62.3
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 2.2e-176 622.9 471 63.9
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 8.2e-176 620.9 481 62.4
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 8.2e-176 620.9 491 61.9
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 1.8e-175 619.8 481 60.7
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 4.1e-175 618.6 520 59.6
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 4.1e-175 618.6 455 64.4
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 7.7e-174 614.4 447 65.1
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 1.0e-173 614.0 440 64.5
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 5.0e-173 611.7 469 63.1
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 1.4e-172 610.1 501 59.5
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 2.5e-172 609.4 466 62.9
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 5.5e-172 608.2 481 62.2
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 5.5e-172 608.2 484 60.7
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 1.2e-171 607.1 451 63.2
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 3.6e-171 605.5 481 62.2
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 3.6e-171 605.5 482 60.4
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 4.7e-171 605.1 452 64.4
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 4.7e-171 605.1 458 62.9
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 1.0e-170 604.0 481 60.5
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 1.4e-170 603.6 486 59.9
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 5.1e-170 601.7 468 61.1
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 1.1e-169 600.5 485 61.0
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 1.3e-168 597.0 481 61.1
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 3.7e-168 595.5 478 59.6
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 1.1e-167 594.0 471 61.8
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 1.2e-166 590.5 478 58.4
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 1.5e-166 590.1 474 61.4
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 1.5e-164 583.6 378 70.6
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 2.5e-164 582.8 459 61.0
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.7e-163 579.3 502 58.2
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 2.6e-161 572.8 485 58.4
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 1.7e-160 570.1 425 63.3
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 3.7e-160 568.9 487 57.1
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 4.8e-160 568.5 395 66.8
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 6.3e-160 568.2 405 66.4
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 2.4e-159 566.2 479 56.8
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 2.0e-158 563.1 402 64.4
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 1.0e-157 560.8 387 68.0
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 8.0e-155 551.2 505 56.4
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 1.2e-153 547.4 437 61.1
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 1.5e-153 547.0 458 57.6
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 9.8e-153 544.3 400 64.0
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 1.6e-150 537.0 389 64.0
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 1.7e-149 533.5 395 63.0
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 4.2e-148 528.9 479 55.1
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 3.5e-142 509.2 357 67.2
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 7.7e-142 508.1 476 54.8
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.9e-141 506.1 505 54.1
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 4.0e-138 495.7 525 51.6
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 1.3e-136 490.7 309 70.2
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 4.6e-134 482.3 394 61.2
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 6.6e-133 478.4 360 63.3
SMO116G0063 Selaginella moellendorffii HOM05D005921 ORTHO05D007374 1.5e-132 477.2 425 55.8
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 1.9e-132 476.9 534 49.8
BolC2t08937H Brassica oleracea HOM05D005921 ORTHO05D007374 2.5e-132 476.5 243 93.4
BraA02t06774Z Brassica rapa HOM05D005921 ORTHO05D007374 5.6e-132 475.3 243 92.6
Mapoly0096s0032 Marchantia polymorpha HOM05D005921 ORTHO05D007374 5.2e-130 468.8 361 57.9
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 1.5e-129 467.2 327 67.0
AagrBONN_evm.TU.Sc2ySwM_344.3190 Anthoceros agrestis HOM05D005921 ORTHO05D007374 1.3e-125 454.1 427 50.1
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 1.2e-123 447.6 379 57.8
Pp3c16_14030 Physcomitrium patens HOM05D005921 ORTHO05D007374 5.2e-122 442.2 334 59.0
BolC2t08936H Brassica oleracea HOM05D005921 ORTHO05D007374 9.8e-121 438.0 238 91.2
BraA02t06773Z Brassica rapa HOM05D005921 ORTHO05D007374 1.1e-119 434.5 231 92.2
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 7.1e-119 431.8 377 58.6
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 3.9e-109 399.4 268 70.5
QL02p037958 Quercus lobata HOM05D005921 ORTHO05D007374 7.9e-94 348.6 240 70.4
QL02p037460 Quercus lobata HOM05D005921 ORTHO05D007374 3.9e-93 346.3 240 70.0
Pp3c6_12100 Physcomitrium patens HOM05D005921 ORTHO05D007374 8.7e-93 345.1 370 47.8
CBR_g30849 Chara braunii HOM05D005921 ORTHO05D007374 6.2e-91 339.0 349 46.4
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 3.4e-89 333.2 329 51.7
QL02p037446 Quercus lobata HOM05D005921 ORTHO05D007374 3.9e-85 319.7 238 63.4
QL02p037946 Quercus lobata HOM05D005921 ORTHO05D007374 3.9e-85 319.7 238 63.4
Oeu017621.1 Olea europaea HOM05D005921 ORTHO05D007374 4.8e-83 312.8 178 77.5
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 1.4e-82 311.2 231 62.8
MCO15G195 Micromonas commoda HOM05D005921 ORTHO05D007374 2.1e-70 270.8 385 38.2
PRCOL_00005633 Prasinoderma coloniale HOM05D005921 ORTHO05D007374 4.2e-63 246.5 328 40.9
Os06g0144600 Oryza sativa ssp. japonica HOM05D005921 ORTHO05D007374 2.5e-55 220.7 191 57.6
Zm00001eb035610 Zea mays HOM05D005921 ORTHO05D007374 3.9e-53 213.4 141 67.4
SEGI_33860 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 1.5e-52 211.5 213 51.6
Zm00001eb246880 Zea mays HOM05D005921 ORTHO05D007374 1.2e-41 175.3 108 69.4
Cre07.g335900 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 4.2e-39 166.8 369 32.0
SEGI_16149 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 1.5e-36 158.3 104 63.5
SHI09097 Sapria himalayana HOM05D005921 ORTHO05D007374 1.6e-30 138.3 74 78.4
Cre06.g309450 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 2.1e-30 137.9 332 30.7
Duzib093G1718 Durio zibethinus HOM05D005921 ORTHO05D007374 3.4e-28 130.6 73 76.7
Pp3c27_7150 Physcomitrium patens HOM05D005921 ORTHO05D007374 2.9e-24 117.5 368 27.7
Zm00001eb035620 Zea mays HOM05D005921 ORTHO05D007374 4.7e-22 110.2 55 83.6
MD10G1034600 Malus domestica HOM05D005921 ORTHO05D007374 5.7e-20 103.2 127 42.5
Sabra02G0051300 Salix brachista HOM05D005921 ORTHO05D007374 1.1e-10 72.4 111 40.5
Prupe.8G040900 Prunus persica HOM05D005921 ORTHO05D007374 7.3e-07 59.7 87 40.2
CBR_g24397 Chara braunii HOM05D005921 ORTHO05D132278 6.2e-06 56.6 81 30.9


User provided reference genes

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