Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24627 Brassica carinata HOM05D003553 ORTHO05D005072 7.1e-77 290.4 137 100.0
BcaB08g35674 Brassica carinata HOM05D003553 ORTHO05D005072 2.5e-53 212.2 103 98.1
BcaC08g46898 Brassica carinata HOM05D003553 ORTHO05D005072 6.5e-30 134.4 106 62.3
AT1G74710 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 8.5e-30 134.0 106 61.3
BcaB02g06963 Brassica carinata HOM05D003553 ORTHO05D005072 8.5e-30 134.0 106 63.2
BcaC03g15524 Brassica carinata HOM05D003553 ORTHO05D005072 1.9e-29 132.9 106 61.3
Thhalv10018346m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 1.9e-29 132.9 83 77.1
AL2G34600 Arabidopsis lyrata HOM05D003553 ORTHO05D005072 5.5e-29 131.3 106 61.3
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 5.5e-29 131.3 107 63.6
Aa31LG4G4940 Aethionema arabicum HOM05D003553 ORTHO05D005072 1.2e-28 130.2 106 59.4
C06p48750 Brassica napus HOM05D003553 ORTHO05D005072 1.6e-28 129.8 107 61.7
A07p29260 Brassica napus HOM05D003553 ORTHO05D005072 2.1e-28 129.4 107 62.6
BraA07t30565Z Brassica rapa HOM05D003553 ORTHO05D005072 2.1e-28 129.4 107 62.6
Sp5g29830 Schrenkiella parvula HOM05D003553 ORTHO05D005072 2.1e-28 129.4 106 60.4
BolC6t39911H Brassica oleracea HOM05D003553 ORTHO05D005072 3.6e-28 128.6 107 61.7
A02p19540 Brassica napus HOM05D003553 ORTHO05D005072 4.7e-28 128.3 107 60.7
C02p32080 Brassica napus HOM05D003553 ORTHO05D005072 4.7e-28 128.3 107 60.7
BolC2t09243H Brassica oleracea HOM05D003553 ORTHO05D005072 4.7e-28 128.3 107 60.7
BraA02t06991Z Brassica rapa HOM05D003553 ORTHO05D005072 4.7e-28 128.3 107 60.7
Carub.0002s2150 Capsella rubella HOM05D003553 ORTHO05D005072 4.7e-28 128.3 106 59.4
BraA07t31582Z Brassica rapa HOM05D003553 ORTHO05D005072 1.8e-27 126.3 107 60.7
CARHR068010 Cardamine hirsuta HOM05D003553 ORTHO05D005072 1.8e-27 126.3 106 59.4
C06p33160 Brassica napus HOM05D003553 ORTHO05D005072 8.8e-27 124.0 107 60.7
BolC6t38431H Brassica oleracea HOM05D003553 ORTHO05D005072 8.8e-27 124.0 107 60.7
Carub.0001s1852 Capsella rubella HOM05D003553 ORTHO05D005072 1.5e-26 123.2 106 57.5
Thhalv10007243m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 2.6e-26 122.5 127 51.2
AT1G18870 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 3.3e-26 122.1 127 50.4
BcaC07g38956 Brassica carinata HOM05D003553 ORTHO05D005072 5.7e-26 121.3 106 56.6
C08p19030 Brassica napus HOM05D003553 ORTHO05D005072 5.7e-26 121.3 106 56.6
BolC8t49526H Brassica oleracea HOM05D003553 ORTHO05D005072 5.7e-26 121.3 106 56.6
A08p30110 Brassica napus HOM05D003553 ORTHO05D005072 7.4e-26 120.9 106 56.6
BraA08t34946Z Brassica rapa HOM05D003553 ORTHO05D005072 7.4e-26 120.9 106 56.6
Sp1g16850 Schrenkiella parvula HOM05D003553 ORTHO05D005072 9.7e-26 120.6 127 50.4
BraA06t24624Z Brassica rapa HOM05D003553 ORTHO05D005072 1.3e-25 120.2 127 48.8
BcaB07g31908 Brassica carinata HOM05D003553 ORTHO05D005072 1.7e-25 119.8 106 54.7
Aa31LG7G3710 Aethionema arabicum HOM05D003553 ORTHO05D005072 4.8e-25 118.2 127 47.2
CARHR019520 Cardamine hirsuta HOM05D003553 ORTHO05D005072 4.8e-25 118.2 83 66.3
BcaB03g12949 Brassica carinata HOM05D003553 ORTHO05D005072 1.4e-24 116.7 127 50.4
A06p15100 Brassica napus HOM05D003553 ORTHO05D005072 1.8e-24 116.3 127 48.0
BolC5t30429H Brassica oleracea HOM05D003553 ORTHO05D005072 2.4e-24 115.9 83 63.9
THA.LOC104813869 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 2.6e-23 112.5 127 47.2
BcaC05g25790 Brassica carinata HOM05D003553 ORTHO05D005072 1.3e-22 110.2 100 55.0
THA.LOC104812556 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 2.9e-22 109.0 83 60.2
A06p09090 Brassica napus HOM05D003553 ORTHO05D005072 1.4e-19 100.1 128 45.3
unitig_750.g28498 Utricularia gibba HOM05D003553 ORTHO05D005072 8.8e-19 97.4 84 54.8
Atru.chr9.2308 Acer truncatum HOM05D003553 ORTHO05D005072 2.0e-18 96.3 83 54.2
Actinidia19057 Actinidia chinensis HOM05D003553 ORTHO05D005072 9.7e-18 94.0 82 52.4
Gohir.A12G175340 Gossypium hirsutum HOM05D003553 ORTHO05D005072 9.7e-18 94.0 83 56.6
Gohir.D05G331200 Gossypium hirsutum HOM05D003553 ORTHO05D005072 1.3e-17 93.6 83 55.4
Gorai.009G355100 Gossypium raimondii HOM05D003553 ORTHO05D005072 1.3e-17 93.6 83 55.4
Potri.012G070000 Populus trichocarpa HOM05D003553 ORTHO05D005072 1.3e-17 93.6 107 49.5
Rhsim08G0159300 Rhododendron simsii HOM05D003553 ORTHO05D005072 1.7e-17 93.2 82 53.7
Gohir.D12G178408 Gossypium hirsutum HOM05D003553 ORTHO05D005072 2.8e-17 92.4 83 55.4
SalBow5G1335 Salvia bowleyana HOM05D003553 ORTHO05D005072 2.8e-17 92.4 83 53.0
CSS0033583 Camellia sinensis var. sinensis HOM05D003553 ORTHO05D005072 6.3e-17 91.3 81 53.1
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 8.3e-17 90.9 127 44.9
Thecc.03G080100 Theobroma cacao HOM05D003553 ORTHO05D005072 8.3e-17 90.9 82 53.7
Cpa.g.sc17.207 Carica papaya HOM05D003553 ORTHO05D005072 1.1e-16 90.5 82 53.7
Duzib084G0749 Durio zibethinus HOM05D003553 ORTHO05D005072 1.1e-16 90.5 82 53.7
Gohir.A04G049100 Gossypium hirsutum HOM05D003553 ORTHO05D005072 1.4e-16 90.1 83 54.2
Ciclev10024236m.g Citrus clementina HOM05D003553 ORTHO05D005072 1.8e-16 89.7 82 56.1
COL.COLO4_05913 Corchorus olitorius HOM05D003553 ORTHO05D005072 1.8e-16 89.7 82 53.7
Migut.I00130 Erythranthe guttata HOM05D003553 ORTHO05D005072 1.8e-16 89.7 83 50.6
FAN04G3159 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.8e-16 89.7 127 44.9
Aqoxy3G03280 Aquilegia oxysepala HOM05D003553 ORTHO05D005072 2.4e-16 89.4 82 52.4
Migut.I00129 Erythranthe guttata HOM05D003553 ORTHO05D005072 2.4e-16 89.4 83 51.8
ECA247G0496 Erigeron canadensis HOM05D003553 ORTHO05D005072 3.1e-16 89.0 125 39.2
FvH4_5g15420 Fragaria vesca HOM05D003553 ORTHO05D005072 3.1e-16 89.0 82 57.3
SGA_v2.0_scaffold25G10906 Striga asiatica HOM05D003553 ORTHO05D005072 3.1e-16 89.0 83 48.2
GSVIVG01008052001 Vitis vinifera HOM05D003553 ORTHO05D005072 3.1e-16 89.0 82 53.7
Cfa018984 Carpinus fangiana HOM05D003553 ORTHO05D005072 4.1e-16 88.6 82 52.4
Dinv19921 Davidia involucrata HOM05D003553 ORTHO05D005072 5.3e-16 88.2 82 52.4
Oeu006476.1 Olea europaea HOM05D003553 ORTHO05D005072 5.3e-16 88.2 83 51.8
Manes.14G075200 Manihot esculenta HOM05D003553 ORTHO05D005072 9.1e-16 87.4 79 54.4
MSTRG.11397 Avicennia marina HOM05D003553 ORTHO05D005072 1.2e-15 87.0 83 48.2
CARHR115670 Cardamine hirsuta HOM05D003553 ORTHO05D005072 1.2e-15 87.0 69 62.3
Gorai.008G190900 Gossypium raimondii HOM05D003553 ORTHO05D005072 1.2e-15 87.0 83 54.2
Lj9A460T56 Lonicera japonica HOM05D003553 ORTHO05D005072 1.2e-15 87.0 115 41.7
Eucgr.B00433 Eucalyptus grandis HOM05D003553 ORTHO05D005072 1.6e-15 86.7 82 52.4
C05p17290 Brassica napus HOM05D003553 ORTHO05D000856 2.0e-15 86.3 58 67.2
Cc04_g15460 Coffea canephora HOM05D003553 ORTHO05D005072 2.0e-15 86.3 79 53.2
Haze_07373 Corylus avellana HOM05D003553 ORTHO05D005072 2.0e-15 86.3 82 51.2
Sc23g0004450 Simmondsia chinensis HOM05D003553 ORTHO05D005072 2.0e-15 86.3 70 61.4
Nn3g17139 Nelumbo nucifera HOM05D003553 ORTHO05D005072 2.7e-15 85.9 81 49.4
Prupe.5G187000 Prunus persica HOM05D003553 ORTHO05D005072 2.7e-15 85.9 82 54.9
Hund26920 Selenicereus undatus HOM05D003553 ORTHO05D005072 3.5e-15 85.5 81 51.9
HanXRQChr14g0461161 Helianthus annuus HOM05D003553 ORTHO05D005072 4.5e-15 85.1 79 50.6
QL10p015682 Quercus lobata HOM05D003553 ORTHO05D005072 4.5e-15 85.1 82 52.4
Peaxi162Scf00013g00033 Petunia axillaris HOM05D003553 ORTHO05D005072 5.9e-15 84.7 82 47.6
DCAR_032137 Daucus carota HOM05D003553 ORTHO05D005072 7.7e-15 84.3 82 50.0
MD06G1188700 Malus domestica HOM05D003553 ORTHO05D005072 7.7e-15 84.3 79 57.0
RcHm_v2.0_Chr7g0180661 Rosa chinensis HOM05D003553 ORTHO05D005072 7.7e-15 84.3 82 54.9
PGSC0003DMG400033038 Solanum tuberosum HOM05D003553 ORTHO05D005072 7.7e-15 84.3 84 46.4
CAN.G628.39 Capsicum annuum HOM05D003553 ORTHO05D005072 1.0e-14 84.0 82 47.6
Sabra12G0049900 Salix brachista HOM05D003553 ORTHO05D005072 1.0e-14 84.0 77 51.9
MSTRG.23042 Avicennia marina HOM05D003553 ORTHO05D005072 1.3e-14 83.6 83 48.2
CsaV3_1G002150 Cucumis sativus L. HOM05D003553 ORTHO05D005072 1.3e-14 83.6 82 45.1
Sed0007559 Sechium edule HOM05D003553 ORTHO05D005072 1.3e-14 83.6 82 42.7
CiPaw.12G016200 Carya illinoinensis HOM05D003553 ORTHO05D005072 1.7e-14 83.2 83 48.2
CDE06G2389 Ceratophyllum demersum HOM05D003553 ORTHO05D005072 1.7e-14 83.2 81 46.9
Zm00001eb310840 Zea mays HOM05D003553 ORTHO05D005072 1.7e-14 83.2 125 40.0
FAN18G1891 Fragaria x ananassa HOM05D003553 ORTHO05D005072 2.2e-14 82.8 70 58.6
BcaC01g03013 Brassica carinata HOM05D003553 ORTHO05D039244 2.9e-14 82.4 97 51.5
MBI11_g14660_MAGBIO Magnolia biondii HOM05D003553 ORTHO05D005072 2.9e-14 82.4 83 47.0
Sopen06g027330 Solanum pennellii HOM05D003553 ORTHO05D005072 3.8e-14 82.0 82 46.3
Lalb_Chr07g0192981 Lupinus albus HOM05D003553 ORTHO05D005072 5.0e-14 81.6 79 50.6
Solyc06g071030.3 Solanum lycopersicum HOM05D003553 ORTHO05D005072 5.0e-14 81.6 82 46.3
vmacro17511 Vaccinium macrocarpon HOM05D003553 ORTHO05D005072 5.0e-14 81.6 82 48.8
EL10Ac1g00671 Beta vulgaris HOM05D003553 ORTHO05D005072 6.5e-14 81.3 81 50.6
Nitab4.5_0009895g0030 Nicotiana tabacum HOM05D003553 ORTHO05D005072 6.5e-14 81.3 129 38.0
Lsat_1_v5_gn_3_22001 Lactuca sativa HOM05D003553 ORTHO05D005072 8.5e-14 80.9 81 50.6
TAR622G0519 Trochodendron aralioides HOM05D003553 ORTHO05D005072 1.1e-13 80.5 77 51.9
Nitab4.5_0000269g0200 Nicotiana tabacum HOM05D003553 ORTHO05D005072 1.9e-13 79.7 129 38.0
arahy.Tifrunner.gnm1.ann1.9TI54L Arachis hypogaea HOM05D003553 ORTHO05D005072 2.5e-13 79.3 79 50.6
arahy.Tifrunner.gnm1.ann1.D3VYYS Arachis hypogaea HOM05D003553 ORTHO05D005072 2.5e-13 79.3 79 50.6
arahy.Tifrunner.gnm1.ann1.PUHY82 Arachis hypogaea HOM05D003553 ORTHO05D005072 2.5e-13 79.3 79 50.6
Glyma.03G070600 Glycine max HOM05D003553 ORTHO05D005072 2.5e-13 79.3 79 50.6
VMungo0331G1422 Vigna mungo HOM05D003553 ORTHO05D005072 2.5e-13 79.3 79 49.4
Glyma.01G104100 Glycine max HOM05D003553 ORTHO05D005072 3.2e-13 79.0 79 50.6
Medtr4g076520 Medicago truncatula HOM05D003553 ORTHO05D005072 3.2e-13 79.0 79 49.4
AUR62038016 Chenopodium quinoa HOM05D003553 ORTHO05D005072 4.2e-13 78.6 113 40.7
Oeu048740.1 Olea europaea HOM05D003553 ORTHO05D005072 4.2e-13 78.6 131 36.6
Phvul.010G011700 Phaseolus vulgaris HOM05D003553 ORTHO05D005072 5.5e-13 78.2 70 52.9
Psat7g237240 Pisum sativum HOM05D003553 ORTHO05D005072 5.5e-13 78.2 70 51.4
AUR62014518 Chenopodium quinoa HOM05D003553 ORTHO05D005072 7.2e-13 77.8 70 55.7
Lj3g0022540 Lotus japonicus HOM05D003553 ORTHO05D005072 7.2e-13 77.8 79 49.4
Ah.08g217620 Amaranthus hybridus HOM05D003553 ORTHO05D005072 9.4e-13 77.4 84 46.4
BcaB01g02747 Brassica carinata HOM05D003553 ORTHO05D039541 9.4e-13 77.4 48 72.9
TPR.G24814 Trifolium pratense HOM05D003553 ORTHO05D005072 1.2e-12 77.0 78 51.3
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 3.6e-12 75.5 127 41.7
Os09g0361500 Oryza sativa ssp. japonica HOM05D003553 ORTHO05D005072 4.7e-12 75.1 77 49.4
ATR1120G170 Amborella trichopoda HOM05D003553 ORTHO05D005072 8.0e-12 74.3 89 44.9
CiPaw.11G039100 Carya illinoinensis HOM05D003553 ORTHO05D005072 1.4e-11 73.6 81 48.1
MELO3C017156.2 Cucumis melo HOM05D003553 ORTHO05D005072 4.0e-11 72.0 82 42.7
HPP92_007667 Vanilla planifolia HOM05D003553 ORTHO05D005072 1.5e-10 70.1 77 45.5
Sc23g0004630 Simmondsia chinensis HOM05D003553 ORTHO05D005072 3.5e-07 58.9 56 55.4
CBR_g48051 Chara braunii HOM05D003553 ORTHO05D005072 4.5e-07 58.5 57 45.6
SMO270G0001 Selaginella moellendorffii HOM05D003553 ORTHO05D005072 5.0e-06 55.1 83 33.7
BcaC01g00346 Brassica carinata HOM05D009862 ORTHO05D018588 6.6e-06 54.7 104 36.5


User provided reference genes

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