Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24626 Brassica carinata HOM05D007874 ORTHO05D009614 7.5e-64 247.3 149 100.0
CARHR064260 Cardamine hirsuta HOM05D007874 ORTHO05D009614 5.4e-38 161.4 142 61.3
BcaB03g14859 Brassica carinata HOM05D007874 ORTHO05D009614 2.7e-37 159.1 149 77.2
Sp5g26130 Schrenkiella parvula HOM05D007874 ORTHO05D009614 2.7e-37 159.1 147 76.9
Thhalv10019301m.g Eutrema salsugineum HOM05D007874 ORTHO05D009614 7.8e-37 157.5 148 70.3
AT1G70985 Arabidopsis thaliana HOM05D007874 ORTHO05D009614 7.3e-35 151.0 139 68.3
AL2G30530 Arabidopsis lyrata HOM05D007874 ORTHO05D009614 2.1e-34 149.4 139 71.2
C02p28490 Brassica napus HOM05D009085 ORTHO05D010299 3.2e-30 135.6 120 81.7
BolC2t08890H Brassica oleracea HOM05D009085 ORTHO05D010299 3.2e-30 135.6 120 81.7
BolC6t39564H Brassica oleracea HOM05D007874 ORTHO05D009614 2.9e-23 112.5 149 65.8
BraA07t31296Z Brassica rapa HOM05D007874 ORTHO05D009614 3.8e-23 112.1 141 66.0
BcaB03g14857 Brassica carinata HOM05D007874 ORTHO05D009614 6.4e-23 111.3 148 66.2
A07p37380 Brassica napus HOM05D007874 ORTHO05D009614 1.2e-21 107.1 141 64.5
A09p41670 Brassica napus HOM05D007874 ORTHO05D009614 4.6e-21 105.1 150 48.7
BraA09t39656Z Brassica rapa HOM05D007874 ORTHO05D009614 4.6e-21 105.1 150 48.7
C06p45060 Brassica napus HOM05D007874 ORTHO05D009614 1.7e-20 103.2 144 61.8
AT1G23050 Arabidopsis thaliana HOM05D007874 ORTHO05D009614 6.6e-20 101.3 152 48.7
BcaC05g26216 Brassica carinata HOM05D007874 ORTHO05D009614 2.5e-19 99.4 142 48.6
C05p22280 Brassica napus HOM05D007874 ORTHO05D009614 2.5e-19 99.4 142 48.6
BolC5t30927H Brassica oleracea HOM05D007874 ORTHO05D009614 2.5e-19 99.4 142 48.6
THA.LOC104809191 Tarenaya hassleriana HOM05D007874 ORTHO05D009614 4.3e-19 98.6 142 50.0
Aa31LG4G10100 Aethionema arabicum HOM05D007874 ORTHO05D009614 3.6e-18 95.5 104 56.7
Ciclev10017051m.g Citrus clementina HOM05D007874 ORTHO05D009614 1.1e-17 94.0 149 37.6
Carub.0002s1776 Capsella rubella HOM05D007874 ORTHO05D009614 1.4e-17 93.6 141 53.2
Cpa.g.sc65.135 Carica papaya HOM05D007874 ORTHO05D009614 1.4e-17 93.6 160 41.2
Carub.0001s2257 Capsella rubella HOM05D007874 ORTHO05D009614 6.4e-15 84.7 144 42.4
Thecc.02G281500 Theobroma cacao HOM05D007874 ORTHO05D009614 1.9e-14 83.2 152 38.2
Duzib251G0922 Durio zibethinus HOM05D007874 ORTHO05D009614 2.4e-14 82.8 143 43.4
Hma1.2p1_0096F.1_g047930 Hydrangea macrophylla HOM05D007874 ORTHO05D009614 3.2e-14 82.4 136 44.1
Manes.17G076900 Manihot esculenta HOM05D007874 ORTHO05D009614 5.4e-14 81.6 142 42.3
Manes.15G127500 Manihot esculenta HOM05D007874 ORTHO05D009614 7.9e-13 77.8 144 41.0
Potri.008G129200 Populus trichocarpa HOM05D007874 ORTHO05D009614 7.9e-13 77.8 150 37.3
AL1G36620 Arabidopsis lyrata HOM05D007874 ORTHO05D009614 2.3e-12 76.3 154 39.6
Sabra08G0097900 Salix brachista HOM05D007874 ORTHO05D009614 2.3e-12 76.3 147 36.7
Sabra10G0083200 Salix brachista HOM05D007874 ORTHO05D009614 2.3e-12 76.3 142 38.7
Sp1g20500 Schrenkiella parvula HOM05D007874 ORTHO05D009614 1.9e-11 73.2 150 50.0
CANSAT01G3222 Cannabis sativa HOM05D007874 ORTHO05D009614 5.6e-11 71.6 134 38.1
Glyma.07G216900 Glycine max HOM05D017162 ORTHO05D009614 1.6e-10 70.1 138 45.7
DCAR_026776 Daucus carota HOM05D007874 ORTHO05D009614 2.1e-10 69.7 149 37.6
CiPaw.06G012000 Carya illinoinensis HOM05D007874 ORTHO05D009614 1.1e-09 67.4 159 34.0
EL10Ac6g14213 Beta vulgaris HOM05D007874 ORTHO05D009614 1.4e-09 67.0 147 37.4
CiPaw.05G249700 Carya illinoinensis HOM05D007874 ORTHO05D009614 1.8e-09 66.6 153 35.9
Cc11_g08720 Coffea canephora HOM05D007874 ORTHO05D009614 3.1e-09 65.9 132 46.2
Dinv05171 Davidia involucrata HOM05D007874 ORTHO05D009614 3.1e-09 65.9 143 38.5
Duzib248G1518 Durio zibethinus HOM05D007874 ORTHO05D009614 5.3e-09 65.1 112 39.3
CARHR023430 Cardamine hirsuta HOM05D007874 ORTHO05D009614 6.9e-09 64.7 160 41.9
Haze_11010 Corylus avellana HOM05D007874 ORTHO05D009614 1.2e-08 63.9 144 32.6
Gorai.002G179200 Gossypium raimondii HOM05D007874 ORTHO05D009614 2.0e-08 63.2 119 42.0
Atru.chr11.536 Acer truncatum HOM05D007874 ORTHO05D009614 2.6e-08 62.8 106 44.3
MSTRG.901 Avicennia marina HOM05D007874 ORTHO05D009614 3.4e-08 62.4 146 42.5
Psat7g128240 Pisum sativum HOM05D007874 ORTHO05D009614 3.4e-08 62.4 156 37.8
Potri.010G113100 Populus trichocarpa HOM05D007874 ORTHO05D009614 5.8e-08 61.6 139 54.0
QL01p001738 Quercus lobata HOM05D007874 ORTHO05D009614 9.9e-08 60.8 119 36.1
Sed0007191 Sechium edule HOM05D007874 ORTHO05D009614 9.9e-08 60.8 114 34.2
RcHm_v2.0_Chr4g0441281 Rosa chinensis HOM05D020194 ORTHO05D009614 1.3e-07 60.5 150 45.3
Nitab4.5_0000742g0160 Nicotiana tabacum HOM05D007874 ORTHO05D009614 1.7e-07 60.1 123 39.0
Lalb_Chr05g0219441 Lupinus albus HOM05D007874 ORTHO05D009614 4.9e-07 58.5 114 49.1
Migut.L00989 Erythranthe guttata HOM05D007874 ORTHO05D009614 4.2e-06 55.5 142 45.8
DCAR_030219 Daucus carota HOM05D007874 ORTHO05D009614 7.1e-06 54.7 140 44.3
Migut.F00186 Erythranthe guttata HOM05D007874 ORTHO05D009614 7.1e-06 54.7 141 48.2


User provided reference genes

Program Settings