Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24610 Brassica carinata HOM05D007477 ORTHO05D009428 3.2e-107 391.7 195 100.0
BcaC03g15231 Brassica carinata HOM05D007477 ORTHO05D009428 1.4e-94 349.7 193 90.7
C02p28170 Brassica napus HOM05D007477 ORTHO05D009428 1.4e-94 349.7 193 90.7
BolC2t08861H Brassica oleracea HOM05D007477 ORTHO05D009428 1.4e-94 349.7 193 90.7
BraA02t06739Z Brassica rapa HOM05D007477 ORTHO05D009428 4.1e-94 348.2 193 90.7
A02p16850 Brassica napus HOM05D007477 ORTHO05D009428 4.5e-93 344.7 193 90.2
BcaC08g46513 Brassica carinata HOM05D007477 ORTHO05D009428 1.1e-91 340.1 194 87.6
Sp5g25940 Schrenkiella parvula HOM05D007477 ORTHO05D009428 1.5e-91 339.7 193 87.6
A07p37160 Brassica napus HOM05D007477 ORTHO05D009428 2.7e-90 335.5 195 86.7
C06p44830 Brassica napus HOM05D007477 ORTHO05D009428 3.6e-90 335.1 195 86.7
BraA07t31278Z Brassica rapa HOM05D007477 ORTHO05D009428 4.7e-90 334.7 195 86.2
BolC6t39542H Brassica oleracea HOM05D007477 ORTHO05D009428 3.0e-89 332.0 195 86.2
Thhalv10019160m.g Eutrema salsugineum HOM05D007477 ORTHO05D009428 3.3e-88 328.6 199 84.4
Carub.0002s1750 Capsella rubella HOM05D007477 ORTHO05D009428 1.9e-83 312.8 191 82.2
AL2G30200 Arabidopsis lyrata HOM05D007477 ORTHO05D009428 3.6e-82 308.5 191 81.7
CARHR064020 Cardamine hirsuta HOM05D007477 ORTHO05D009428 2.3e-81 305.8 192 80.2
AT1G70760 Arabidopsis thaliana HOM05D007477 ORTHO05D009428 4.4e-80 301.6 191 80.6
Aa31LG4G10230 Aethionema arabicum HOM05D007477 ORTHO05D009428 2.4e-70 269.2 192 69.3
THA.LOC104823000 Tarenaya hassleriana HOM05D007477 ORTHO05D009428 1.8e-62 243.0 193 61.7
Duzib251G0266 Durio zibethinus HOM05D007477 ORTHO05D009428 4.0e-57 225.3 190 58.9
Thecc.02G287400 Theobroma cacao HOM05D007477 ORTHO05D009428 8.9e-57 224.2 164 64.0
Cpa.g.sc1084.2 Carica papaya HOM05D007477 ORTHO05D009428 7.5e-56 221.1 175 64.6
Gohir.D02G141700 Gossypium hirsutum HOM05D007477 ORTHO05D009428 1.7e-52 209.9 193 58.0
Gohir.A03G118700 Gossypium hirsutum HOM05D007477 ORTHO05D009428 1.5e-51 206.8 192 57.3
QL03p033890 Quercus lobata HOM05D007477 ORTHO05D009428 2.5e-51 206.1 163 60.1
Prupe.1G330000 Prunus persica HOM05D007477 ORTHO05D009428 3.3e-51 205.7 187 55.1
GSVIVG01011707001 Vitis vinifera HOM05D007477 ORTHO05D009428 2.1e-50 203.0 158 58.9
Dinv28044 Davidia involucrata HOM05D007477 ORTHO05D009428 8.1e-50 201.1 188 53.2
Lalb_Chr07g0187731 Lupinus albus HOM05D007477 ORTHO05D009428 8.1e-50 201.1 191 52.4
Cfa014979 Carpinus fangiana HOM05D007477 ORTHO05D009428 1.1e-49 200.7 175 56.0
Ciclev10016822m.g Citrus clementina HOM05D007477 ORTHO05D009428 2.3e-49 199.5 190 56.8
Manes.15G131100 Manihot esculenta HOM05D007477 ORTHO05D009428 2.3e-49 199.5 188 54.8
TWI74G0372 Tripterygium wilfordii HOM05D007477 ORTHO05D009428 4.0e-49 198.7 175 53.7
PGR004G1414 Punica granatum HOM05D007477 ORTHO05D009428 5.2e-49 198.4 143 65.0
RcHm_v2.0_Chr4g0443591 Rosa chinensis HOM05D007477 ORTHO05D009428 6.8e-49 198.0 191 53.4
CiPaw.06G048300 Carya illinoinensis HOM05D007477 ORTHO05D009428 8.9e-49 197.6 188 52.1
DCAR_023590 Daucus carota HOM05D007477 ORTHO05D009428 1.5e-48 196.8 189 57.1
Lj4g0016169 Lotus japonicus HOM05D007477 ORTHO05D009428 2.2e-47 193.0 189 51.9
CANSAT01G0728 Cannabis sativa HOM05D007477 ORTHO05D009428 3.7e-47 192.2 188 52.7
Actinidia12373 Actinidia chinensis HOM05D007477 ORTHO05D009428 6.4e-47 191.4 176 53.4
MELO3C005297.2 Cucumis melo HOM05D007477 ORTHO05D009428 6.4e-47 191.4 134 67.9
Eucgr.G02161 Eucalyptus grandis HOM05D007477 ORTHO05D009428 3.2e-46 189.1 178 52.8
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 1.2e-45 187.2 202 52.0
Gorai.005G159500 Gossypium raimondii HOM05D007477 ORTHO05D009428 1.6e-45 186.8 194 53.1
arahy.Tifrunner.gnm1.ann1.4G9RAC Arachis hypogaea HOM05D007477 ORTHO05D009428 2.1e-45 186.4 184 53.8
arahy.Tifrunner.gnm1.ann1.KUTA9A Arachis hypogaea HOM05D007477 ORTHO05D009428 2.1e-45 186.4 184 53.8
Sed0009759 Sechium edule HOM05D007477 ORTHO05D009428 7.8e-45 184.5 191 51.8
Lj3A866T67 Lonicera japonica HOM05D007477 ORTHO05D009428 1.1e-43 180.6 187 50.3
Potri.010G110400 Populus trichocarpa HOM05D007477 ORTHO05D009428 1.1e-43 180.6 182 51.6
Actinidia36649 Actinidia chinensis HOM05D007477 ORTHO05D009428 2.5e-43 179.5 181 52.5
Atru.chr11.654 Acer truncatum HOM05D007477 ORTHO05D009428 5.6e-43 178.3 190 49.5
HanXRQChr12g0363541 Helianthus annuus HOM05D007477 ORTHO05D009428 7.3e-43 177.9 163 53.4
Solyc05g026550.3 Solanum lycopersicum HOM05D007477 ORTHO05D009428 9.5e-43 177.6 142 62.7
MSTRG.7617 Avicennia marina HOM05D007477 ORTHO05D009428 2.1e-42 176.4 190 50.5
Psat7g082600 Pisum sativum HOM05D007477 ORTHO05D009428 2.1e-42 176.4 196 51.5
Nitab4.5_0003022g0050 Nicotiana tabacum HOM05D007477 ORTHO05D009428 3.6e-42 175.6 165 54.5
Peaxi162Scf00376g00125 Petunia axillaris HOM05D007477 ORTHO05D009428 4.7e-42 175.3 192 50.5
Sopen05g023010 Solanum pennellii HOM05D007477 ORTHO05D002065 4.7e-42 175.3 142 62.0
PGSC0003DMG400015900 Solanum tuberosum HOM05D007477 ORTHO05D009428 4.7e-42 175.3 142 62.0
AUR62014194 Chenopodium quinoa HOM05D007477 ORTHO05D009428 6.2e-42 174.9 180 47.8
Ca_11592_v3 Cicer arietinum L. HOM05D007477 ORTHO05D009428 8.1e-42 174.5 198 52.0
ECA233G5235 Erigeron canadensis HOM05D007477 ORTHO05D009428 8.1e-42 174.5 192 50.5
FAN17G0828 Fragaria x ananassa HOM05D007477 ORTHO05D009428 8.1e-42 174.5 193 49.7
Nn4g24250 Nelumbo nucifera HOM05D007477 ORTHO05D009428 8.1e-42 174.5 139 58.3
Lsat_1_v5_gn_8_44241 Lactuca sativa HOM05D007477 ORTHO05D009428 1.1e-41 174.1 140 59.3
Glyma.05G139800 Glycine max HOM05D007477 ORTHO05D009428 2.4e-41 172.9 182 50.5
FAN07G0335 Fragaria x ananassa HOM05D007477 ORTHO05D009428 3.1e-41 172.6 193 49.7
Migut.L00398 Erythranthe guttata HOM05D007477 ORTHO05D009428 4.0e-41 172.2 188 50.5
FvH4_4g34090 Fragaria vesca HOM05D007477 ORTHO05D009428 5.2e-41 171.8 192 49.0
SalBow8G0293 Salvia bowleyana HOM05D007477 ORTHO05D009428 5.2e-41 171.8 126 62.7
FAN12G2365 Fragaria x ananassa HOM05D007477 ORTHO05D009428 6.8e-41 171.4 193 49.2
Nitab4.5_0002473g0010 Nicotiana tabacum HOM05D007477 ORTHO05D009428 6.8e-41 171.4 184 50.5
Phvul.002G183200 Phaseolus vulgaris HOM05D007477 ORTHO05D009428 1.2e-40 170.6 188 50.0
unitig_26.g9564 Utricularia gibba HOM05D000544 ORTHO05D009428 1.2e-40 170.6 187 49.2
MBI12_g05373_MAGBIO Magnolia biondii HOM05D007477 ORTHO05D009428 3.4e-40 169.1 113 65.5
VMungo0251G0485 Vigna mungo HOM05D007477 ORTHO05D009428 2.2e-39 166.4 189 49.2
Cc11_g08270 Coffea canephora HOM05D007477 ORTHO05D009428 8.4e-39 164.5 126 61.1
PSO478G2137 Papaver somniferum HOM05D007477 ORTHO05D009428 1.2e-37 160.6 171 49.7
CAN.G439.27 Capsicum annuum HOM05D007477 ORTHO05D009428 2.7e-37 159.5 140 56.4
Rhsim09G0093900 Rhododendron simsii HOM05D007477 ORTHO05D009428 1.1e-35 154.1 192 44.8
Haze_10942 Corylus avellana HOM05D007477 ORTHO05D009428 1.9e-35 153.3 174 45.4
Aqoxy3G00052 Aquilegia oxysepala HOM05D007477 ORTHO05D009428 5.6e-35 151.8 118 59.3
CDE05G1013 Ceratophyllum demersum HOM05D007477 ORTHO05D009428 5.6e-35 151.8 177 49.2
ClCG01G006330 Citrullus lanatus HOM05D007477 ORTHO05D009428 8.1e-34 147.9 194 43.8
vmacro10662 Vaccinium macrocarpon HOM05D007477 ORTHO05D009428 2.4e-33 146.4 182 46.7
EL10Ac9g22714 Beta vulgaris HOM05D007477 ORTHO05D009428 2.9e-31 139.4 122 52.5
ATR0564G098 Amborella trichopoda HOM05D007477 ORTHO05D009428 1.9e-30 136.7 108 58.3
Ah.01g007630 Amaranthus hybridus HOM05D007477 ORTHO05D009428 1.7e-28 130.2 161 45.3
Zm00001eb312390 Zea mays HOM05D007477 ORTHO05D009428 8.7e-28 127.9 160 44.4
Glyma.08G095100 Glycine max HOM05D007477 ORTHO05D009428 1.5e-27 127.1 181 43.1
MD16G1022900 Malus domestica HOM05D007477 ORTHO05D009428 3.3e-27 125.9 140 47.9
Zm00001eb099410 Zea mays HOM05D007477 ORTHO05D009428 4.3e-27 125.6 103 54.4
Os05g0348100 Oryza sativa ssp. japonica HOM05D007477 ORTHO05D009428 4.9e-23 112.1 70 67.1
MD13G1021900 Malus domestica HOM05D007477 ORTHO05D009428 4.2e-22 109.0 101 51.5
AUR62039526 Chenopodium quinoa HOM05D007477 ORTHO05D009428 7.6e-16 88.2 132 34.8
SEGI_14142 Sequoiadendron giganteum HOM05D007477 ORTHO05D009428 2.9e-15 86.3 161 35.4
FAN22G0194 Fragaria x ananassa HOM05D007477 ORTHO05D009428 1.1e-14 84.3 193 33.2
Mapoly0003s0200 Marchantia polymorpha HOM05D007477 ORTHO05D009428 3.2e-14 82.8 124 42.7
Pp3c24_18490 Physcomitrium patens HOM05D007477 ORTHO05D009428 3.2e-14 82.8 76 56.6
COL.COLO4_13101 Corchorus olitorius HOM05D007477 ORTHO05D009428 3.0e-12 76.3 117 40.2
Sabra10G0080700 Salix brachista HOM05D007477 ORTHO05D009428 1.1e-11 74.3 102 39.2
TAR622G1153 Trochodendron aralioides HOM05D007477 ORTHO05D009428 2.0e-08 63.5 53 49.1
AagrBONN_evm.TU.Sc2ySwM_344.2533 Anthoceros agrestis HOM05D007477 ORTHO05D009428 1.9e-06 57.0 54 50.0


User provided reference genes

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