Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24599 Brassica carinata HOM05D002002 ORTHO05D008797 0.0e+00 1366.3 857 100.0
BraA02t06728Z Brassica rapa HOM05D002002 ORTHO05D008797 7.2e-308 1060.4 898 75.1
A02p16740 Brassica napus HOM05D002002 ORTHO05D008797 3.1e-303 1045.0 866 77.4
BolC2t08843H Brassica oleracea HOM05D002002 ORTHO05D008797 1.6e-278 963.0 879 74.7
BcaC03g15213 Brassica carinata HOM05D002002 ORTHO05D008797 1.9e-271 939.5 865 75.0
C02p28000 Brassica napus HOM05D002002 ORTHO05D008797 4.2e-263 911.8 808 73.8
Sp5g25780 Schrenkiella parvula HOM05D002002 ORTHO05D008797 1.2e-241 840.5 912 67.0
Thhalv10018098m.g Eutrema salsugineum HOM05D002002 ORTHO05D008797 2.0e-212 743.4 776 63.8
AL2G30050 Arabidopsis lyrata HOM05D002002 ORTHO05D008797 5.0e-208 728.8 842 60.3
CARHR063850 Cardamine hirsuta HOM05D002002 ORTHO05D008797 6.1e-206 721.8 903 61.6
Aa31LG4G10340 Aethionema arabicum HOM05D002002 ORTHO05D008711 1.7e-171 607.4 961 50.2
Carub.0002s1735 Capsella rubella HOM05D002002 ORTHO05D008797 1.5e-151 541.2 632 65.0
AT1G70620 Arabidopsis thaliana HOM05D002002 ORTHO05D008797 1.9e-138 497.7 633 61.1
Atru.chr11.2102 Acer truncatum HOM05D002002 ORTHO05D008797 1.7e-46 192.2 907 29.7
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 2.9e-46 191.4 872 31.0
CiPaw.05G182600 Carya illinoinensis HOM05D002002 ORTHO05D008797 8.3e-46 189.9 764 30.5
Potri.010G046000 Populus trichocarpa HOM05D002002 ORTHO05D008797 8.3e-46 189.9 905 27.6
Duzib248G0209 Durio zibethinus HOM05D002002 ORTHO05D008797 4.1e-45 187.6 931 29.4
Gohir.D04G179800 Gossypium hirsutum HOM05D002002 ORTHO05D008797 2.3e-43 181.8 918 30.4
Gorai.012G173000 Gossypium raimondii HOM05D002002 ORTHO05D008797 3.0e-43 181.4 920 30.4
Thecc.02G259600 Theobroma cacao HOM05D002002 ORTHO05D008797 3.3e-42 177.9 940 28.7
Manes.13G024600 Manihot esculenta HOM05D002002 ORTHO05D008797 3.6e-41 174.5 908 30.4
FAN17G1038 Fragaria x ananassa HOM05D002002 ORTHO05D008711 4.7e-41 174.1 800 28.0
Dinv15235 Davidia involucrata HOM05D002002 ORTHO05D008797 3.1e-40 171.4 970 29.4
Duzib251G0042 Durio zibethinus HOM05D002002 ORTHO05D008797 3.1e-40 171.4 958 28.8
Cfa009210 Carpinus fangiana HOM05D002002 ORTHO05D008797 1.2e-39 169.5 907 30.4
Ciclev10030634m.g Citrus clementina HOM05D002002 ORTHO05D008797 4.4e-39 167.5 843 28.5
Gohir.A04G136700 Gossypium hirsutum HOM05D002002 ORTHO05D008797 4.4e-39 167.5 792 28.5
Cpa.g.sc33.18 Carica papaya HOM05D002002 ORTHO05D008797 5.8e-39 167.2 849 29.6
RcHm_v2.0_Chr4g0432951 Rosa chinensis HOM05D002002 ORTHO05D008797 8.4e-38 163.3 739 28.8
MD16G1102300 Malus domestica HOM05D002002 ORTHO05D008797 9.2e-37 159.8 881 27.7
QL03p058108 Quercus lobata HOM05D002002 ORTHO05D008797 3.5e-36 157.9 674 29.4
Lalb_Chr16g0392181 Lupinus albus HOM05D002002 ORTHO05D008797 4.6e-36 157.5 900 26.3
Glyma.18G143900 Glycine max HOM05D002002 ORTHO05D008797 1.0e-35 156.4 866 26.6
Sabra08G0141500 Salix brachista HOM05D002002 ORTHO05D008797 1.0e-35 156.4 904 30.3
MD13G1101700 Malus domestica HOM05D002002 ORTHO05D008797 3.0e-35 154.8 732 29.0
GSVIVG01005756001 Vitis vinifera HOM05D002002 ORTHO05D008797 1.9e-34 152.1 577 29.5
Phvul.003G065200 Phaseolus vulgaris HOM05D002002 ORTHO05D008797 7.3e-34 150.2 886 29.1
arahy.Tifrunner.gnm1.ann1.PHTA8N Arachis hypogaea HOM05D002002 ORTHO05D008711 9.6e-34 149.8 767 29.3
Dinv24786 Davidia involucrata HOM05D002002 ORTHO05D008797 1.3e-33 149.4 778 27.9
FvH4_4g25541 Fragaria vesca HOM05D002002 ORTHO05D008797 5.3e-32 144.1 796 29.5
Potri.008G186900 Populus trichocarpa HOM05D002002 ORTHO05D008797 1.2e-31 142.9 888 29.1
Eucgr.H02500 Eucalyptus grandis HOM05D002002 ORTHO05D008797 4.4e-31 141.0 934 26.6
Migut.K00597 Erythranthe guttata HOM05D002002 ORTHO05D008797 9.9e-31 139.8 960 28.0
PGR119G0425 Punica granatum HOM05D002002 ORTHO05D008797 6.4e-30 137.1 727 29.4
Lj4g0017193 Lotus japonicus HOM05D002002 ORTHO05D008797 1.6e-28 132.5 844 28.0
COL.COLO4_24277 Corchorus olitorius HOM05D002002 ORTHO05D008797 1.7e-27 129.0 702 31.5
Psat4g115320 Pisum sativum HOM05D002002 ORTHO05D008797 5.1e-27 127.5 874 24.9
Nitab4.5_0000007g0090 Nicotiana tabacum HOM05D002002 ORTHO05D008797 1.1e-26 126.3 889 28.2
AUR62005461 Chenopodium quinoa HOM05D002002 ORTHO05D008797 4.3e-26 124.4 832 29.0
TWI75G1475 Tripterygium wilfordii HOM05D002002 ORTHO05D008797 4.3e-26 124.4 970 28.5
AUR62024280 Chenopodium quinoa HOM05D002002 ORTHO05D008797 2.8e-25 121.7 734 26.3
CsaV3_5G031140 Cucumis sativus L. HOM05D002002 ORTHO05D008797 1.8e-24 119.0 947 25.4
Glyma.08G282400 Glycine max HOM05D002002 ORTHO05D008797 2.4e-24 118.6 898 26.3
MELO3C011952.2 Cucumis melo HOM05D002002 ORTHO05D008711 4.0e-24 117.9 908 25.4
Aqoxy3G01206 Aquilegia oxysepala HOM05D002002 ORTHO05D008797 5.3e-24 117.5 893 25.4
FAN22G2309 Fragaria x ananassa HOM05D002002 ORTHO05D008797 5.3e-24 117.5 590 27.5
TPR.G17755 Trifolium pratense HOM05D002002 ORTHO05D008711 9.0e-24 116.7 577 28.6
SGA_v2.0_scaffold476G52131 Striga asiatica HOM05D002002 ORTHO05D008797 1.5e-23 115.9 643 31.4
Nn4g22624 Nelumbo nucifera HOM05D002002 ORTHO05D008797 2.0e-23 115.5 796 30.0
Ca_22584_v3 Cicer arietinum L. HOM05D002002 ORTHO05D008711 3.4e-23 114.8 836 25.2
Prupe.1G244100 Prunus persica HOM05D002002 ORTHO05D008797 4.5e-23 114.4 657 31.5
arahy.Tifrunner.gnm1.ann1.YSSX7I Arachis hypogaea HOM05D002002 ORTHO05D008797 7.6e-23 113.6 831 26.7
TAR374G0715 Trochodendron aralioides HOM05D002002 ORTHO05D008797 7.6e-23 113.6 848 29.6
Lalb_Chr05g0228431 Lupinus albus HOM05D002002 ORTHO05D008797 9.9e-23 113.2 870 26.6
vmacro16196 Vaccinium macrocarpon HOM05D002002 ORTHO05D008797 9.9e-23 113.2 533 30.4
ECA233G4520 Erigeron canadensis HOM05D002002 ORTHO05D008797 1.7e-22 112.5 900 25.6
Sed0005394 Sechium edule HOM05D002002 ORTHO05D008797 1.7e-22 112.5 859 26.2
Actinidia15094 Actinidia chinensis HOM05D002002 ORTHO05D008797 2.9e-22 111.7 912 27.2
EL10Ac6g13807 Beta vulgaris HOM05D002002 ORTHO05D008797 2.4e-21 108.6 885 27.9
ClCG05G025730 Citrullus lanatus HOM05D002002 ORTHO05D008797 7.1e-21 107.1 847 26.3
SGA_v2.0_scaffold98G29360 Striga asiatica HOM05D002002 ORTHO05D008797 3.5e-20 104.8 445 29.2
CANSAT01G0132 Cannabis sativa HOM05D002002 ORTHO05D008797 2.3e-19 102.1 770 24.9
Oeu029877.3 Olea europaea HOM05D002002 ORTHO05D008797 6.7e-19 100.5 718 30.8
TAR622G0079 Trochodendron aralioides HOM05D002002 ORTHO05D008797 1.5e-18 99.4 891 31.2
PSO478G2109 Papaver somniferum HOM05D002002 ORTHO05D008797 1.1e-16 93.2 691 26.8
PSO017G3282 Papaver somniferum HOM05D002002 ORTHO05D008797 1.4e-16 92.8 895 27.4
Hund25388 Selenicereus undatus HOM05D002002 ORTHO05D008797 1.8e-16 92.4 727 26.0
Sc11g0000970 Simmondsia chinensis HOM05D002002 ORTHO05D008797 5.3e-16 90.9 886 26.6
Nn3g16709 Nelumbo nucifera HOM05D002002 ORTHO05D008797 6.9e-16 90.5 797 28.2
CAN.G832.3 Capsicum annuum HOM05D002002 ORTHO05D008797 9.0e-16 90.1 831 26.8
DCAR_031153 Daucus carota HOM05D002002 ORTHO05D008797 1.5e-15 89.4 843 25.3
Oeu059906.4 Olea europaea HOM05D002002 ORTHO05D008797 1.5e-15 89.4 894 27.2
ATR0824G114 Amborella trichopoda HOM05D002002 ORTHO05D008797 7.6e-15 87.0 752 25.0
CSS0037172 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D008797 2.2e-14 85.5 892 27.8
DCAR_007056 Daucus carota HOM05D002002 ORTHO05D008797 2.9e-14 85.1 756 26.5
Sopen05g008360 Solanum pennellii HOM05D002002 ORTHO05D008797 2.9e-14 85.1 834 26.5
TPR.G3025 Trifolium pratense HOM05D002002 ORTHO05D008797 1.4e-13 82.8 242 32.2
Peaxi162Scf00128g00134 Petunia axillaris HOM05D002002 ORTHO05D008797 1.9e-13 82.4 909 25.9
Nitab4.5_0009240g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008797 9.3e-13 80.1 808 24.1
HanXRQChr08g0208141 Helianthus annuus HOM05D002002 ORTHO05D008797 3.5e-12 78.2 793 26.5
Cc11_g15720 Coffea canephora HOM05D002002 ORTHO05D008797 7.9e-12 77.0 853 28.3
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 3.9e-11 74.7 891 25.5
TPR.G2569 Trifolium pratense HOM05D002002 ORTHO05D008797 5.1e-11 74.3 152 34.9
TPR.G3029 Trifolium pratense HOM05D002002 ORTHO05D008797 7.4e-10 70.5 643 28.9
Lj6A812T43 Lonicera japonica HOM05D002002 ORTHO05D008797 1.1e-08 66.6 146 33.6
Rhsim12G0110400 Rhododendron simsii HOM05D002002 ORTHO05D008797 1.5e-07 62.8 700 27.7
SalBow2G1965 Salvia bowleyana HOM05D002002 ORTHO05D008797 2.6e-07 62.0 710 25.5
SEGI_37990 Sequoiadendron giganteum HOM05D002002 ORTHO05D008797 1.0e-06 60.1 699 23.6


User provided reference genes

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