Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24594 Brassica carinata HOM05D005895 ORTHO05D012801 4.4e-65 251.1 126 100.0
A02p16670 Brassica napus HOM05D005895 ORTHO05D012801 4.4e-33 144.8 156 55.8
BraA02t06723Z Brassica rapa HOM05D005895 ORTHO05D012801 4.4e-33 144.8 156 55.8
C02p27930 Brassica napus HOM05D005895 ORTHO05D012801 9.9e-33 143.7 159 55.3
BolC2t08838H Brassica oleracea HOM05D005895 ORTHO05D012801 9.9e-33 143.7 159 55.3
C02p27920 Brassica napus HOM05D005895 ORTHO05D007916 4.0e-26 121.7 107 67.3
BolC2t08837H Brassica oleracea HOM05D005895 ORTHO05D007916 4.0e-26 121.7 107 67.3
AT1G70570 Arabidopsis thaliana HOM05D005895 ORTHO05D007916 8.9e-26 120.6 107 67.3
Sp5g25720 Schrenkiella parvula HOM05D005895 ORTHO05D007916 8.9e-26 120.6 107 65.4
BcaB08g34808 Brassica carinata HOM05D005895 ORTHO05D007916 1.2e-25 120.2 74 83.8
Thhalv10018314m.g Eutrema salsugineum HOM05D005895 ORTHO05D007916 1.2e-25 120.2 107 65.4
Aa31LG4G10380 Aethionema arabicum HOM05D005895 ORTHO05D007916 2.0e-25 119.4 107 64.5
BcaB05g24593 Brassica carinata HOM05D005895 ORTHO05D007916 2.0e-25 119.4 107 66.4
A02p16660 Brassica napus HOM05D005895 ORTHO05D007916 2.0e-25 119.4 107 66.4
BraA02t06722Z Brassica rapa HOM05D005895 ORTHO05D007916 2.0e-25 119.4 107 66.4
CARHR063780 Cardamine hirsuta HOM05D005895 ORTHO05D007916 2.0e-25 119.4 74 85.1
AL2G29960 Arabidopsis lyrata HOM05D005895 ORTHO05D007916 3.4e-25 118.6 107 66.4
Carub.0002s1729 Capsella rubella HOM05D005895 ORTHO05D007916 3.4e-25 118.6 107 66.4
THA.LOC104822982 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 7.6e-25 117.5 73 80.8
Ciclev10030909m.g Citrus clementina HOM05D005895 ORTHO05D007916 1.7e-24 116.3 111 59.5
Gorai.005G179700 Gossypium raimondii HOM05D005895 ORTHO05D007916 1.4e-23 113.2 74 77.0
MELO3C011963.2 Cucumis melo HOM05D005895 ORTHO05D007916 2.4e-23 112.5 74 77.0
Gorai.012G172600 Gossypium raimondii HOM05D005895 ORTHO05D007916 2.4e-23 112.5 74 74.3
Eucgr.H02516 Eucalyptus grandis HOM05D005895 ORTHO05D007916 4.2e-23 111.7 105 58.1
Gohir.A04G136400 Gossypium hirsutum HOM05D005895 ORTHO05D007916 5.4e-23 111.3 74 73.0
Gohir.D02G159600 Gossypium hirsutum HOM05D005895 ORTHO05D007916 7.1e-23 110.9 74 75.7
Atru.chr11.2117 Acer truncatum HOM05D005895 ORTHO05D007916 9.3e-23 110.5 74 71.6
Atru.chr11.2133 Acer truncatum HOM05D005895 ORTHO05D007916 9.3e-23 110.5 74 71.6
CsaV3_5G031240 Cucumis sativus L. HOM05D005895 ORTHO05D007916 9.3e-23 110.5 74 75.7
Sed0023548 Sechium edule HOM05D005895 ORTHO05D007916 9.3e-23 110.5 74 74.3
Actinidia27801 Actinidia chinensis HOM05D005895 ORTHO05D007916 1.6e-22 109.8 106 56.6
Cfa009199 Carpinus fangiana HOM05D005895 ORTHO05D007916 1.6e-22 109.8 106 57.5
COL.COLO4_24246 Corchorus olitorius HOM05D005895 ORTHO05D007916 1.6e-22 109.8 74 75.7
Sabra10G0023200 Salix brachista HOM05D005895 ORTHO05D007916 1.6e-22 109.8 111 54.1
Haze_12237 Corylus avellana HOM05D005895 ORTHO05D007916 2.1e-22 109.4 106 56.6
Hund06020 Selenicereus undatus HOM05D005895 ORTHO05D007916 2.7e-22 109.0 107 56.1
AUR62024296 Chenopodium quinoa HOM05D005895 ORTHO05D007916 3.5e-22 108.6 74 73.0
QL03p058522 Quercus lobata HOM05D005895 ORTHO05D007916 3.5e-22 108.6 104 57.7
Ah.03g133150 Amaranthus hybridus HOM05D005895 ORTHO05D007916 4.6e-22 108.2 74 74.3
AUR62005446 Chenopodium quinoa HOM05D005895 ORTHO05D007916 4.6e-22 108.2 74 73.0
Potri.010G044900 Populus trichocarpa HOM05D005895 ORTHO05D007916 6.0e-22 107.8 111 54.1
Aqoxy3G01161 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 7.8e-22 107.5 73 69.9
PGR119G2505 Punica granatum HOM05D005895 ORTHO05D007916 7.8e-22 107.5 73 71.2
CSS0018548 Camellia sinensis var. sinensis HOM05D005895 ORTHO05D007916 1.0e-21 107.1 105 55.2
CiPaw.05G183400 Carya illinoinensis HOM05D005895 ORTHO05D007916 1.0e-21 107.1 106 56.6
Duzib251G0200 Durio zibethinus HOM05D005895 ORTHO05D007916 1.0e-21 107.1 74 70.3
Nn4g22655 Nelumbo nucifera HOM05D005895 ORTHO05D007916 1.0e-21 107.1 74 68.9
GSVIVG01004086001 Vitis vinifera HOM05D005895 ORTHO05D007916 1.0e-21 107.1 107 57.0
CANSAT01G2589 Cannabis sativa HOM05D005895 ORTHO05D007916 1.3e-21 106.7 73 68.5
MD13G1098000 Malus domestica HOM05D005895 ORTHO05D007916 1.3e-21 106.7 72 69.4
TWI36G0590 Tripterygium wilfordii HOM05D005895 ORTHO05D007916 1.3e-21 106.7 72 72.2
vmacro01130 Vaccinium macrocarpon HOM05D005895 ORTHO05D007916 1.7e-21 106.3 74 71.6
TAR371G0306 Trochodendron aralioides HOM05D005895 ORTHO05D007916 2.3e-21 105.9 106 55.7
arahy.Tifrunner.gnm1.ann1.LQ91H7 Arachis hypogaea HOM05D005895 ORTHO05D007916 3.0e-21 105.5 72 72.2
Cc04_g11160 Coffea canephora HOM05D005895 ORTHO05D007916 3.0e-21 105.5 74 67.6
HPP92_003081 Vanilla planifolia HOM05D005895 ORTHO05D007916 3.0e-21 105.5 72 68.1
DCAR_007061 Daucus carota HOM05D005895 ORTHO05D007916 3.9e-21 105.1 74 67.6
EL10Ac6g13787 Beta vulgaris HOM05D005895 ORTHO05D007916 8.7e-21 104.0 88 60.2
Lj6A811T72 Lonicera japonica HOM05D005895 ORTHO05D007916 8.7e-21 104.0 104 53.8
MD16G1098900 Malus domestica HOM05D005895 ORTHO05D007916 8.7e-21 104.0 72 66.7
Thecc.02G257400 Theobroma cacao HOM05D005895 ORTHO05D007916 1.1e-20 103.6 74 68.9
ECA233G5390 Erigeron canadensis HOM05D005895 ORTHO05D007916 1.5e-20 103.2 74 70.3
FvH4_4g25910 Fragaria vesca HOM05D005895 ORTHO05D007916 1.5e-20 103.2 73 64.4
FAN12G1268 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.5e-20 103.2 73 64.4
Prupe.1G247400 Prunus persica HOM05D005895 ORTHO05D007916 1.5e-20 103.2 104 54.8
HanXRQChr08g0208071 Helianthus annuus HOM05D005895 ORTHO05D007916 1.9e-20 102.8 74 67.6
ClCG05G025660 Citrullus lanatus HOM05D005895 ORTHO05D007916 2.5e-20 102.4 105 57.1
Lsat_1_v5_gn_8_150700 Lactuca sativa HOM05D005895 ORTHO05D007916 2.5e-20 102.4 74 68.9
Solyc04g025540.3 Solanum lycopersicum HOM05D005895 ORTHO05D007916 2.5e-20 102.4 72 69.4
Sopen04g012770 Solanum pennellii HOM05D005895 ORTHO05D007916 2.5e-20 102.4 72 69.4
SalBow8G2958 Salvia bowleyana HOM05D005895 ORTHO05D007916 3.3e-20 102.1 102 53.9
FAN07G1086 Fragaria x ananassa HOM05D005895 ORTHO05D007916 4.3e-20 101.7 73 64.4
Lalb_Chr05g0228401 Lupinus albus HOM05D005895 ORTHO05D007916 4.3e-20 101.7 72 69.4
Peaxi162Scf02256g00001 Petunia axillaris HOM05D005895 ORTHO05D007916 4.3e-20 101.7 105 53.3
Aqoxy5G03807 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 5.6e-20 101.3 74 64.9
PSO017G6602 Papaver somniferum HOM05D005895 ORTHO05D007916 5.6e-20 101.3 104 53.8
PSO478G2260 Papaver somniferum HOM05D005895 ORTHO05D007916 5.6e-20 101.3 104 53.8
RcHm_v2.0_Chr4g0433361 Rosa chinensis HOM05D005895 ORTHO05D007916 5.6e-20 101.3 105 52.4
unitig_52.g17177 Utricularia gibba HOM05D005895 ORTHO05D007916 5.6e-20 101.3 72 68.1
CAN.G7.20 Capsicum annuum HOM05D005895 ORTHO05D007916 7.3e-20 100.9 102 53.9
FAN17G0264 Fragaria x ananassa HOM05D005895 ORTHO05D007916 7.3e-20 100.9 105 50.5
ATR0585G083 Amborella trichopoda HOM05D005895 ORTHO05D007916 9.6e-20 100.5 114 55.3
BcaC03g15207 Brassica carinata HOM05D005895 ORTHO05D007916 9.6e-20 100.5 94 63.8
Phvul.003G063900 Phaseolus vulgaris HOM05D005895 ORTHO05D007916 9.6e-20 100.5 109 50.5
TPR.G34672 Trifolium pratense HOM05D005895 ORTHO05D007916 9.6e-20 100.5 106 53.8
FAN22G0931 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.3e-19 100.1 72 63.9
Medtr8g069525 Medicago truncatula HOM05D005895 ORTHO05D007916 1.6e-19 99.8 111 51.4
Nitab4.5_0000370g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 1.6e-19 99.8 102 52.9
FAN12G2739 Fragaria x ananassa HOM05D005895 ORTHO05D007916 2.1e-19 99.4 69 66.7
Zm00001eb231230 Zea mays HOM05D005895 ORTHO05D007916 2.1e-19 99.4 72 63.9
Glyma.08G283100 Glycine max HOM05D005895 ORTHO05D007916 2.8e-19 99.0 109 53.2
MBI10_g00734_MAGBIO Magnolia biondii HOM05D005895 ORTHO05D007916 3.6e-19 98.6 72 66.7
Rhsim12G0041200 Rhododendron simsii HOM05D005895 ORTHO05D007916 3.6e-19 98.6 69 68.1
VMungo0251G0514 Vigna mungo HOM05D005895 ORTHO05D007916 6.2e-19 97.8 109 50.5
Zm00001eb209010 Zea mays HOM05D005895 ORTHO05D007916 6.2e-19 97.8 72 62.5
Migut.E00194 Erythranthe guttata HOM05D005895 ORTHO05D007916 8.1e-19 97.4 102 52.9
Nitab4.5_0006332g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 8.1e-19 97.4 102 52.0
Os02g0131200 Oryza sativa ssp. japonica HOM05D005895 ORTHO05D007916 8.1e-19 97.4 106 52.8
MSTRG.2417 Avicennia marina HOM05D005895 ORTHO05D007916 1.8e-18 96.3 103 52.4
SEGI_08481 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 9.0e-18 94.0 72 63.9
Pp3c12_14340 Physcomitrium patens HOM05D005895 ORTHO05D007916 2.6e-17 92.4 72 65.3
Mapoly0129s0050 Marchantia polymorpha HOM05D005895 ORTHO05D007916 3.4e-17 92.0 74 66.2
Lj4g0008127 Lotus japonicus HOM05D005895 ORTHO05D007916 4.4e-17 91.7 113 48.7
SHI17741 Sapria himalayana HOM05D000002 ORTHO05D000001 5.8e-17 91.3 71 59.2
Cpa.g.sc33.4 Carica papaya HOM05D005895 ORTHO05D007916 1.3e-16 90.1 99 51.5
CBR_g37584 Chara braunii HOM05D000019 ORTHO05D000048 3.8e-16 88.6 101 49.5
SMO119G0060 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 3.2e-15 85.5 74 59.5
Oeu059911.1 Olea europaea HOM05D005895 ORTHO05D007916 5.4e-15 84.7 51 78.4
Gohir.D04G179500 Gossypium hirsutum HOM05D005895 ORTHO05D007916 9.3e-15 84.0 55 72.7
BcaC03g15209 Brassica carinata HOM05D011341 ORTHO05D012801 3.5e-14 82.0 58 75.9
C02p27970 Brassica napus HOM05D011341 ORTHO05D012801 3.5e-14 82.0 58 75.9
BolC2t08840H Brassica oleracea HOM05D011341 ORTHO05D012801 3.5e-14 82.0 58 75.9
Sc04g0009430 Simmondsia chinensis HOM05D005895 ORTHO05D007916 7.9e-14 80.9 88 52.3
Sp5g25740 Schrenkiella parvula HOM05D011341 ORTHO05D012801 2.3e-13 79.3 89 52.8
Gohir.A03G136300 Gossypium hirsutum HOM05D005895 ORTHO05D007916 2.5e-12 75.9 42 85.7
CARHR063800 Cardamine hirsuta HOM05D011341 ORTHO05D012801 1.3e-11 73.6 87 49.4
AL2G30000 Arabidopsis lyrata HOM05D011341 ORTHO05D012801 2.4e-10 69.3 62 54.8
A07p37010 Brassica napus HOM05D011341 ORTHO05D012801 1.9e-07 59.7 53 60.4
BraA07t31264Z Brassica rapa HOM05D011341 ORTHO05D012801 1.9e-07 59.7 53 60.4
BolC6t39522H Brassica oleracea HOM05D011341 ORTHO05D012801 2.4e-07 59.3 55 60.0
BcaC08g46508 Brassica carinata HOM05D011341 ORTHO05D012801 5.5e-07 58.2 49 63.3
C06p44580 Brassica napus HOM05D011341 ORTHO05D012801 5.5e-07 58.2 49 63.3
BcaB05g24596 Brassica carinata HOM05D011341 ORTHO05D012801 1.2e-06 57.0 49 55.1
BcaC03g15211 Brassica carinata HOM05D016736 ORTHO05D019958 3.5e-06 55.5 55 61.8
A02p16700 Brassica napus HOM05D011341 ORTHO05D042382 3.5e-06 55.5 36 69.4
BraA02t06725Z Brassica rapa HOM05D011341 ORTHO05D042382 3.5e-06 55.5 36 69.4


User provided reference genes

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