Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24593 Brassica carinata HOM05D005895 ORTHO05D007916 0.0e+00 1174.1 595 100.0
A02p16660 Brassica napus HOM05D005895 ORTHO05D007916 0.0e+00 1124.0 598 96.5
BraA02t06722Z Brassica rapa HOM05D005895 ORTHO05D007916 0.0e+00 1117.8 598 95.8
C02p27920 Brassica napus HOM05D005895 ORTHO05D007916 0.0e+00 1110.9 597 95.3
BolC2t08837H Brassica oleracea HOM05D005895 ORTHO05D007916 0.0e+00 1110.9 597 95.3
BcaC03g15207 Brassica carinata HOM05D005895 ORTHO05D007916 0.0e+00 1088.2 584 95.2
Sp5g25720 Schrenkiella parvula HOM05D005895 ORTHO05D007916 0.0e+00 1087.0 599 93.5
Thhalv10018314m.g Eutrema salsugineum HOM05D005895 ORTHO05D007916 8.1e-311 1069.7 599 92.0
AT1G70570 Arabidopsis thaliana HOM05D005895 ORTHO05D007916 7.1e-307 1056.6 598 91.8
AL2G29960 Arabidopsis lyrata HOM05D005895 ORTHO05D007916 3.0e-305 1051.2 599 91.0
Carub.0002s1729 Capsella rubella HOM05D005895 ORTHO05D007916 5.6e-304 1047.0 598 90.8
CARHR063780 Cardamine hirsuta HOM05D005895 ORTHO05D007916 2.8e-303 1044.6 595 90.4
Aa31LG4G10380 Aethionema arabicum HOM05D005895 ORTHO05D007916 1.1e-288 996.1 599 85.6
THA.LOC104822982 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 4.9e-284 980.7 596 84.1
Gohir.A04G136400 Gossypium hirsutum HOM05D005895 ORTHO05D007916 7.2e-267 923.7 599 78.0
Gorai.012G172600 Gossypium raimondii HOM05D005895 ORTHO05D007916 5.1e-265 917.5 599 77.6
COL.COLO4_24246 Corchorus olitorius HOM05D005895 ORTHO05D007916 1.5e-264 916.0 596 78.0
Thecc.02G257400 Theobroma cacao HOM05D005895 ORTHO05D007916 4.1e-262 907.9 595 77.0
Haze_12237 Corylus avellana HOM05D005895 ORTHO05D007916 1.1e-259 899.8 599 76.1
Ciclev10030909m.g Citrus clementina HOM05D005895 ORTHO05D007916 1.5e-259 899.4 597 76.7
QL03p058522 Quercus lobata HOM05D005895 ORTHO05D007916 4.2e-259 897.9 597 75.7
Cfa009199 Carpinus fangiana HOM05D005895 ORTHO05D007916 1.6e-258 896.0 599 76.0
Gohir.D04G179500 Gossypium hirsutum HOM05D005895 ORTHO05D007916 3.9e-257 891.3 580 77.8
Atru.chr11.2133 Acer truncatum HOM05D005895 ORTHO05D007916 6.7e-257 890.6 598 75.8
Atru.chr11.2117 Acer truncatum HOM05D005895 ORTHO05D007916 4.4e-256 887.9 598 75.3
PGR119G2505 Punica granatum HOM05D005895 ORTHO05D007916 1.1e-254 883.2 596 74.3
CiPaw.05G183400 Carya illinoinensis HOM05D005895 ORTHO05D007916 1.8e-254 882.5 597 74.9
Potri.010G044900 Populus trichocarpa HOM05D005895 ORTHO05D007916 9.1e-254 880.2 596 74.7
Eucgr.H02516 Eucalyptus grandis HOM05D005895 ORTHO05D007916 1.2e-253 879.8 594 74.2
Cpa.g.sc33.4 Carica papaya HOM05D005895 ORTHO05D007916 1.6e-253 879.4 584 76.9
Prupe.1G247400 Prunus persica HOM05D005895 ORTHO05D007916 2.6e-253 878.6 597 75.2
MELO3C011963.2 Cucumis melo HOM05D005895 ORTHO05D007916 4.5e-253 877.9 607 74.0
CANSAT01G2589 Cannabis sativa HOM05D005895 ORTHO05D007916 1.0e-252 876.7 598 74.4
GSVIVG01004086001 Vitis vinifera HOM05D005895 ORTHO05D007916 2.9e-252 875.2 598 73.7
Gorai.005G179700 Gossypium raimondii HOM05D005895 ORTHO05D007916 1.5e-251 872.8 596 75.3
AUR62024296 Chenopodium quinoa HOM05D005895 ORTHO05D007916 2.1e-250 869.0 597 73.7
Sabra10G0023200 Salix brachista HOM05D005895 ORTHO05D007916 3.6e-250 868.2 601 73.2
CsaV3_5G031240 Cucumis sativus L. HOM05D005895 ORTHO05D007916 4.0e-249 864.8 607 73.0
RcHm_v2.0_Chr4g0433361 Rosa chinensis HOM05D005895 ORTHO05D007916 1.5e-248 862.8 596 73.0
TWI36G0590 Tripterygium wilfordii HOM05D005895 ORTHO05D007916 3.4e-248 861.7 600 72.3
Hund06020 Selenicereus undatus HOM05D005895 ORTHO05D007916 1.1e-246 856.7 604 71.7
FvH4_4g25910 Fragaria vesca HOM05D005895 ORTHO05D007916 1.4e-246 856.3 604 72.8
MBI10_g00734_MAGBIO Magnolia biondii HOM05D005895 ORTHO05D007916 1.4e-246 856.3 596 73.0
CSS0018548 Camellia sinensis var. sinensis HOM05D005895 ORTHO05D007916 1.8e-246 855.9 594 72.4
MD13G1098000 Malus domestica HOM05D005895 ORTHO05D007916 1.8e-246 855.9 599 72.8
AUR62005446 Chenopodium quinoa HOM05D005895 ORTHO05D007916 3.1e-246 855.1 600 72.7
TPR.G34672 Trifolium pratense HOM05D005895 ORTHO05D007916 9.1e-246 853.6 603 71.6
TAR371G0306 Trochodendron aralioides HOM05D005895 ORTHO05D007916 3.5e-245 851.7 540 77.4
Glyma.08G283100 Glycine max HOM05D005895 ORTHO05D007916 1.0e-244 850.1 577 73.1
Sed0023548 Sechium edule HOM05D005895 ORTHO05D007916 1.0e-244 850.1 607 72.0
FAN07G1086 Fragaria x ananassa HOM05D005895 ORTHO05D007916 5.0e-244 847.8 604 72.4
arahy.Tifrunner.gnm1.ann1.LQ91H7 Arachis hypogaea HOM05D005895 ORTHO05D007916 6.5e-244 847.4 598 72.2
Actinidia27801 Actinidia chinensis HOM05D005895 ORTHO05D007916 8.5e-244 847.0 597 71.7
Ah.03g133150 Amaranthus hybridus HOM05D005895 ORTHO05D007916 1.1e-243 846.7 597 72.5
Solyc04g025540.3 Solanum lycopersicum HOM05D005895 ORTHO05D007916 1.9e-243 845.9 594 71.9
FAN12G1268 Fragaria x ananassa HOM05D005895 ORTHO05D007916 4.2e-243 844.7 604 72.4
MD16G1098900 Malus domestica HOM05D005895 ORTHO05D007916 9.4e-243 843.6 600 72.2
Medtr8g069525 Medicago truncatula HOM05D005895 ORTHO05D007916 9.4e-243 843.6 600 71.7
FAN12G2739 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.6e-242 842.8 600 72.7
Lj6A811T72 Lonicera japonica HOM05D005895 ORTHO05D007916 4.7e-242 841.3 606 70.8
CAN.G7.20 Capsicum annuum HOM05D005895 ORTHO05D007916 8.0e-242 840.5 538 76.4
ECA233G5390 Erigeron canadensis HOM05D005895 ORTHO05D007916 4.0e-241 838.2 568 73.4
Sopen04g012770 Solanum pennellii HOM05D005895 ORTHO05D007916 4.0e-241 838.2 594 71.2
DCAR_007061 Daucus carota HOM05D005895 ORTHO05D007916 2.0e-240 835.9 595 70.3
EL10Ac6g13787 Beta vulgaris HOM05D005895 ORTHO05D007916 2.6e-240 835.5 623 69.0
VMungo0251G0514 Vigna mungo HOM05D005895 ORTHO05D007916 4.4e-240 834.7 597 70.2
FAN17G0264 Fragaria x ananassa HOM05D005895 ORTHO05D007916 2.8e-239 832.0 574 73.2
vmacro01130 Vaccinium macrocarpon HOM05D005895 ORTHO05D007916 3.1e-238 828.6 636 67.9
Sc04g0009430 Simmondsia chinensis HOM05D005895 ORTHO05D007916 5.4e-238 827.8 578 72.0
Lalb_Chr05g0228401 Lupinus albus HOM05D005895 ORTHO05D007916 2.7e-237 825.5 576 72.0
SalBow8G2958 Salvia bowleyana HOM05D005895 ORTHO05D007916 3.8e-236 821.6 594 69.9
PSO017G6602 Papaver somniferum HOM05D005895 ORTHO05D007916 6.6e-236 820.8 539 75.5
PSO478G2260 Papaver somniferum HOM05D005895 ORTHO05D007916 6.6e-236 820.8 599 70.5
Aqoxy5G03807 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 1.5e-235 819.7 578 71.1
Gohir.D02G159600 Gossypium hirsutum HOM05D005895 ORTHO05D007916 3.3e-235 818.5 595 72.6
THA.LOC104818151 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 1.4e-233 813.1 496 83.1
Migut.E00194 Erythranthe guttata HOM05D005895 ORTHO05D007916 8.9e-233 810.4 594 69.0
Lj4g0008127 Lotus japonicus HOM05D005895 ORTHO05D007916 1.2e-232 810.1 596 69.0
Cc04_g11160 Coffea canephora HOM05D005895 ORTHO05D007916 4.9e-231 804.7 542 73.1
FAN22G0931 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.2e-229 800.0 637 67.2
HanXRQChr08g0208071 Helianthus annuus HOM05D005895 ORTHO05D007916 2.3e-228 795.8 543 72.6
Nitab4.5_0006332g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 4.0e-225 785.0 593 67.6
Aqoxy3G01161 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 3.7e-223 778.5 536 72.4
ClCG05G025660 Citrullus lanatus HOM05D005895 ORTHO05D007916 5.4e-222 774.6 598 68.7
Manes.12G024300 Manihot esculenta HOM05D005895 ORTHO05D007916 9.2e-222 773.9 521 75.8
Zm00001eb231230 Zea mays HOM05D005895 ORTHO05D007916 1.0e-220 770.4 598 66.6
HPP92_003081 Vanilla planifolia HOM05D005895 ORTHO05D007916 1.7e-220 769.6 522 73.0
ATR0585G083 Amborella trichopoda HOM05D005895 ORTHO05D007916 5.0e-220 768.1 537 72.8
Nn4g22655 Nelumbo nucifera HOM05D005895 ORTHO05D007916 8.6e-220 767.3 542 70.7
Os02g0131200 Oryza sativa ssp. japonica HOM05D005895 ORTHO05D007916 2.5e-219 765.8 564 69.9
Nitab4.5_0000370g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 2.4e-214 749.2 593 65.4
Lsat_1_v5_gn_8_150700 Lactuca sativa HOM05D005895 ORTHO05D007916 7.1e-214 747.7 592 66.2
Manes.13G025800 Manihot esculenta HOM05D005895 ORTHO05D007916 3.5e-213 745.3 470 78.9
Psat0s3772g0040 Pisum sativum HOM05D005895 ORTHO05D007916 4.6e-213 745.0 524 71.2
Ca_22578_v3 Cicer arietinum L. HOM05D005895 ORTHO05D007916 1.3e-212 743.4 524 71.0
arahy.Tifrunner.gnm1.ann1.0I87EX Arachis hypogaea HOM05D005895 ORTHO05D007916 3.0e-212 742.3 527 71.7
Phvul.003G063900 Phaseolus vulgaris HOM05D005895 ORTHO05D007916 6.2e-210 734.6 461 76.1
Gohir.A03G136300 Gossypium hirsutum HOM05D005895 ORTHO05D007916 4.3e-203 711.8 494 72.9
Duzib251G0200 Durio zibethinus HOM05D005895 ORTHO05D007916 1.4e-201 706.8 595 64.7
MSTRG.2417 Avicennia marina HOM05D005895 ORTHO05D007916 4.0e-201 705.3 442 77.4
Oeu059911.1 Olea europaea HOM05D005895 ORTHO05D007916 7.1e-198 694.5 528 67.4
Sed0009772 Sechium edule HOM05D005895 ORTHO05D007916 1.7e-196 689.9 495 71.9
Mapoly0129s0050 Marchantia polymorpha HOM05D005895 ORTHO05D007916 7.3e-195 684.5 510 67.6
Zm00001eb209010 Zea mays HOM05D005895 ORTHO05D007916 7.1e-190 667.9 546 63.4
Pp3c12_14340 Physcomitrium patens HOM05D005895 ORTHO05D007916 2.3e-188 662.9 504 66.3
unitig_52.g17177 Utricularia gibba HOM05D005895 ORTHO05D007916 7.6e-184 647.9 539 62.7
Peaxi162Scf01242g00143 Petunia axillaris HOM05D005895 ORTHO05D007916 2.4e-177 626.3 382 78.3
SMO119G0060 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 6.9e-177 624.8 520 63.3
AagrBONN_evm.TU.Sc2ySwM_368.1304 Anthoceros agrestis HOM05D005895 ORTHO05D007916 2.3e-164 583.2 446 65.2
Dinv24803 Davidia involucrata HOM05D005895 ORTHO05D007916 3.9e-156 555.8 394 71.8
Pp3c10_19590 Physcomitrium patens HOM05D005895 ORTHO05D007916 3.7e-122 443.0 346 62.7
FAN18G3006 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.7e-90 337.8 200 82.0
SHI17741 Sapria himalayana HOM05D000002 ORTHO05D000001 6.4e-90 335.9 253 68.4
CBR_g37586 Chara braunii HOM05D000019 ORTHO05D000048 4.0e-68 263.5 274 52.2
CBR_g37584 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-55 222.2 208 53.8
SEGI_05407 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 3.1e-52 210.7 139 74.8
Peaxi162Scf02256g00001 Petunia axillaris HOM05D005895 ORTHO05D007916 2.1e-48 198.0 143 68.5
BcaB08g34808 Brassica carinata HOM05D005895 ORTHO05D007916 2.2e-45 188.0 102 95.1
SEGI_24305 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 4.8e-37 160.2 100 75.0
SEGI_08481 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 3.6e-32 144.1 101 67.3
BcaB05g24594 Brassica carinata HOM05D005895 ORTHO05D012801 5.5e-25 120.2 107 66.4
DCAR_028023 Daucus carota HOM05D005895 ORTHO05D007916 9.4e-25 119.4 65 86.2
SMO163G0072 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 5.2e-23 113.6 174 42.0
Ah.07g201790 Amaranthus hybridus HOM05D005895 ORTHO05D007916 3.3e-22 110.9 66 75.8
A02p16670 Brassica napus HOM05D005895 ORTHO05D012801 4.1e-20 104.0 65 83.1
BraA02t06723Z Brassica rapa HOM05D005895 ORTHO05D012801 4.1e-20 104.0 65 83.1
Rhsim12G0041200 Rhododendron simsii HOM05D005895 ORTHO05D007916 5.3e-20 103.6 76 67.1
C02p27930 Brassica napus HOM05D005895 ORTHO05D012801 2.7e-19 101.3 68 79.4
BolC2t08838H Brassica oleracea HOM05D005895 ORTHO05D012801 2.7e-19 101.3 68 79.4
DCAR_029453 Daucus carota HOM05D005895 ORTHO05D007916 3.2e-17 94.4 68 70.6
Gorai.012G172500 Gossypium raimondii HOM05D005895 ORTHO05D007916 3.6e-16 90.9 54 79.6
CSS0038190 Camellia sinensis var. sinensis HOM05D033929 ORTHO05D026310 4.7e-16 90.5 121 44.6
Actinidia08142 Actinidia chinensis HOM05D005895 ORTHO05D026310 1.5e-06 58.9 124 35.5


User provided reference genes

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