Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24561 Brassica carinata HOM05D007293 ORTHO05D009143 5.0e-46 187.6 105 100.0
Sp5g25470 Schrenkiella parvula HOM05D007293 ORTHO05D009143 1.4e-37 159.5 107 87.9
BcaB03g15542 Brassica carinata HOM05D007293 ORTHO05D009143 5.5e-37 157.5 107 86.9
BcaC03g15179 Brassica carinata HOM05D007293 ORTHO05D009143 9.7e-34 146.7 108 83.3
BcaC08g45820 Brassica carinata HOM05D007293 ORTHO05D009143 1.7e-33 146.0 106 84.9
Thhalv10019350m.g Eutrema salsugineum HOM05D007293 ORTHO05D009143 4.1e-32 141.4 107 79.4
AT1G70350 Arabidopsis thaliana HOM05D007293 ORTHO05D009143 1.6e-31 139.4 107 78.5
BolC6t38732H Brassica oleracea HOM05D007293 ORTHO05D009143 2.6e-31 138.7 104 82.7
AL2G29660 Arabidopsis lyrata HOM05D007293 ORTHO05D009143 4.5e-31 137.9 107 76.6
C02p27590 Brassica napus HOM05D007293 ORTHO05D009143 5.9e-31 137.5 107 80.4
CARHR063530 Cardamine hirsuta HOM05D007293 ORTHO05D009143 7.7e-31 137.1 107 77.6
BolC2t08814H Brassica oleracea HOM05D007293 ORTHO05D009143 1.0e-30 136.7 107 80.4
Carub.0002s1704 Capsella rubella HOM05D007293 ORTHO05D009143 1.0e-30 136.7 107 76.6
A02p16490 Brassica napus HOM05D007293 ORTHO05D009143 2.2e-30 135.6 107 78.5
BraA02t06707Z Brassica rapa HOM05D007293 ORTHO05D009143 2.2e-30 135.6 107 78.5
C06p36130 Brassica napus HOM05D007293 ORTHO05D009143 2.9e-30 135.2 104 81.7
A07p31100 Brassica napus HOM05D007293 ORTHO05D009143 4.7e-28 127.9 102 78.4
BraA07t30744Z Brassica rapa HOM05D007293 ORTHO05D009143 4.7e-28 127.9 102 78.4
BcaB07g33183 Brassica carinata HOM05D027076 ORTHO05D027107 2.3e-27 125.6 84 85.7
THA.LOC104808972 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 1.5e-21 106.3 107 62.6
THA.LOC104822141 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 7.2e-21 104.0 107 65.4
PGR119G0124 Punica granatum HOM05D007293 ORTHO05D009143 6.3e-17 90.9 107 57.9
Atru.chr11.2025 Acer truncatum HOM05D007293 ORTHO05D009143 4.1e-16 88.2 105 53.3
Duzib268G1575 Durio zibethinus HOM05D007293 ORTHO05D009143 4.1e-16 88.2 105 58.1
FAN17G1887 Fragaria x ananassa HOM05D007293 ORTHO05D009143 5.4e-16 87.8 106 56.6
FAN22G1529 Fragaria x ananassa HOM05D007293 ORTHO05D009143 5.4e-16 87.8 106 56.6
Thecc.02G249100 Theobroma cacao HOM05D007293 ORTHO05D009143 5.4e-16 87.8 106 57.5
FAN12G1260 Fragaria x ananassa HOM05D007293 ORTHO05D009143 1.2e-15 86.7 106 56.6
RcHm_v2.0_Chr4g0443851 Rosa chinensis HOM05D007293 ORTHO05D009143 1.6e-15 86.3 105 56.2
TWI75G0451 Tripterygium wilfordii HOM05D007293 ORTHO05D009143 2.7e-15 85.5 108 55.6
Ciclev10033010m.g Citrus clementina HOM05D007293 ORTHO05D009143 4.5e-15 84.7 105 54.3
FvH4_4g34460 Fragaria vesca HOM05D007293 ORTHO05D009143 5.9e-15 84.3 106 55.7
MD13G1091900 Malus domestica HOM05D007293 ORTHO05D009143 1.0e-14 83.6 106 52.8
ClCG08G018060 Citrullus lanatus HOM05D007293 ORTHO05D009143 1.3e-14 83.2 110 57.3
Glyma.02G034600 Glycine max HOM05D007293 ORTHO05D009143 1.3e-14 83.2 105 54.3
Gohir.A03G139900 Gossypium hirsutum HOM05D007293 ORTHO05D009143 1.3e-14 83.2 106 56.6
Gohir.D02G162700 Gossypium hirsutum HOM05D007293 ORTHO05D009143 1.3e-14 83.2 106 56.6
RcHm_v2.0_Chr4g0443841 Rosa chinensis HOM05D007293 ORTHO05D009143 1.3e-14 83.2 107 54.2
TPR.G13591 Trifolium pratense HOM05D007293 ORTHO05D009143 1.3e-14 83.2 105 53.3
Manes.13G030700 Manihot esculenta HOM05D007293 ORTHO05D009143 1.7e-14 82.8 117 52.1
MD16G1092500 Malus domestica HOM05D007293 ORTHO05D009143 2.2e-14 82.4 106 52.8
Gorai.005G182700 Gossypium raimondii HOM05D007293 ORTHO05D009143 2.9e-14 82.0 106 55.7
Psat2g106240 Pisum sativum HOM05D007293 ORTHO05D009143 6.5e-14 80.9 108 49.1
Psat0s2875g0160 Pisum sativum HOM05D007293 ORTHO05D009143 8.5e-14 80.5 107 50.5
Prupe.1G253900 Prunus persica HOM05D007293 ORTHO05D009143 8.5e-14 80.5 109 53.2
Cfa009144 Carpinus fangiana HOM05D007293 ORTHO05D009143 1.1e-13 80.1 105 51.4
Duzib251G0045 Durio zibethinus HOM05D007293 ORTHO05D009143 1.9e-13 79.3 100 55.0
Phvul.002G071600 Phaseolus vulgaris HOM05D007293 ORTHO05D009143 2.5e-13 79.0 105 50.5
Lj2g0011400 Lotus japonicus HOM05D007293 ORTHO05D009143 9.5e-13 77.0 111 51.4
CiPaw.05G150900 Carya illinoinensis HOM05D007293 ORTHO05D009143 1.2e-12 76.6 105 47.6
COL.COLO4_36768 Corchorus olitorius HOM05D007293 ORTHO05D009143 3.6e-12 75.1 100 55.0
Medtr5g034340 Medicago truncatula HOM05D007293 ORTHO05D009143 3.6e-12 75.1 99 48.5
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 6.1e-12 74.3 83 62.7
CANSAT01G1482 Cannabis sativa HOM05D007293 ORTHO05D009143 8.0e-12 73.9 106 50.0
Eucgr.H02610 Eucalyptus grandis HOM05D007293 ORTHO05D009143 8.0e-12 73.9 115 49.6
Lalb_Chr09g0326381 Lupinus albus HOM05D007293 ORTHO05D009143 3.0e-11 72.0 105 45.7
Prupe.5G015600 Prunus persica HOM05D007293 ORTHO05D009143 3.0e-11 72.0 102 52.0
Aa31LG4G10590 Aethionema arabicum HOM05D007293 ORTHO05D009143 4.0e-11 71.6 64 68.8
Ca_13998_v3 Cicer arietinum L. HOM05D007293 ORTHO05D009143 6.8e-11 70.9 98 48.0
Haze_12178 Corylus avellana HOM05D007293 ORTHO05D009143 6.8e-11 70.9 104 46.2
Dinv33495 Davidia involucrata HOM05D007293 ORTHO05D009143 6.8e-11 70.9 112 48.2
VMungo1215G2593 Vigna mungo HOM05D007293 ORTHO05D009143 2.0e-10 69.3 100 47.0
Migut.K01369 Erythranthe guttata HOM05D007293 ORTHO05D009143 2.6e-10 68.9 106 47.2
QL03p061237 Quercus lobata HOM05D007293 ORTHO05D009143 5.7e-10 67.8 111 48.6
Sc04g0009130 Simmondsia chinensis HOM05D007293 ORTHO05D009143 1.3e-09 66.6 55 72.7
AUR62014041 Chenopodium quinoa HOM05D007293 ORTHO05D009143 2.2e-09 65.9 94 52.1
Os01g0738000 Oryza sativa ssp. japonica HOM05D007293 ORTHO05D009143 4.9e-09 64.7 105 47.6
TPR.G13583 Trifolium pratense HOM05D007293 ORTHO05D009143 6.3e-09 64.3 110 45.5
CsaV3_4G037870 Cucumis sativus L. HOM05D001719 ORTHO05D008883 8.3e-09 63.9 103 50.5
Dinv35058 Davidia involucrata HOM05D007293 ORTHO05D009143 1.1e-08 63.5 106 43.4
Migut.H00123 Erythranthe guttata HOM05D007293 ORTHO05D009143 1.1e-08 63.5 109 49.5
GSVIVG01032483001 Vitis vinifera HOM05D007293 ORTHO05D009143 1.1e-08 63.5 113 47.8
CSS0045153 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 3.1e-08 62.0 106 44.3
Zm00001eb153880 Zea mays HOM05D007293 ORTHO05D009143 4.1e-08 61.6 105 47.6
AUR62005378 Chenopodium quinoa HOM05D007293 ORTHO05D009143 5.4e-08 61.2 93 50.5
FAN07G2443 Fragaria x ananassa HOM05D007293 ORTHO05D009143 5.4e-08 61.2 89 53.9
Hund05995 Selenicereus undatus HOM05D007293 ORTHO05D009143 5.4e-08 61.2 106 47.2
arahy.Tifrunner.gnm1.ann1.F37JRW Arachis hypogaea HOM05D007293 ORTHO05D009143 1.2e-07 60.1 102 48.0
DCAR_011205 Daucus carota HOM05D007293 ORTHO05D009143 1.2e-07 60.1 111 45.9
TAR622G0242 Trochodendron aralioides HOM05D007293 ORTHO05D009143 1.2e-07 60.1 104 46.2
Aqoxy3G02974 Aquilegia oxysepala HOM05D007293 ORTHO05D009143 1.6e-07 59.7 110 48.2
Lj7A591G78 Lonicera japonica HOM05D007293 ORTHO05D009143 2.0e-07 59.3 51 66.7
CSS0040497 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 4.5e-07 58.2 106 42.5
Oeu062917.1 Olea europaea HOM05D007293 ORTHO05D009143 4.5e-07 58.2 101 47.5
Medtr5g034360 Medicago truncatula HOM05D007293 ORTHO05D009143 1.7e-06 56.2 44 68.2
Nn3g16892 Nelumbo nucifera HOM05D007293 ORTHO05D009143 1.7e-06 56.2 48 68.8
RcHm_v2.0_Chr7g0223421 Rosa chinensis HOM05D002091 ORTHO05D002140 2.9e-06 55.5 90 45.6
CSS0015603 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 3.8e-06 55.1 103 43.7
CDE06G2495 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 3.8e-06 55.1 72 54.2
arahy.Tifrunner.gnm1.ann1.HDCN36 Arachis hypogaea HOM05D007293 ORTHO05D009143 5.0e-06 54.7 102 46.1
Actinidia06026 Actinidia chinensis HOM05D007293 ORTHO05D009143 8.6e-06 53.9 51 62.7


User provided reference genes

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