Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 1.1e-66 256.5 132 100.0
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 3.7e-46 188.3 128 77.3
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 9.0e-45 183.7 129 76.7
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 2.0e-44 182.6 129 76.0
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 3.8e-43 178.3 131 72.5
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 3.8e-43 178.3 131 72.5
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 8.5e-35 150.6 128 60.9
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 5.5e-34 147.9 130 58.5
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 3.4e-28 128.6 129 50.4
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 7.9e-25 117.5 129 51.2
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.8e-24 116.3 131 51.9
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 2.3e-24 115.9 131 51.1
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 3.9e-24 115.2 131 48.9
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 5.1e-24 114.8 131 49.6
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.1e-23 113.6 131 49.6
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 1.5e-23 113.2 131 48.9
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 2.0e-23 112.8 131 49.6
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 2.0e-23 112.8 131 50.4
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 9.7e-23 110.5 83 63.9
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 9.7e-23 110.5 131 48.1
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 9.7e-23 110.5 131 48.1
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 1.7e-22 109.8 131 48.1
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 3.7e-22 108.6 129 45.7
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 3.7e-22 108.6 132 47.7
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 3.7e-22 108.6 132 45.5
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 4.8e-22 108.2 131 46.6
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 8.2e-22 107.5 130 47.7
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 1.1e-21 107.1 130 46.9
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 1.4e-21 106.7 132 47.0
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 1.8e-21 106.3 130 47.7
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 3.1e-21 105.5 122 48.4
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 4.1e-21 105.1 120 50.8
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 4.1e-21 105.1 122 47.5
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 5.3e-21 104.8 130 46.2
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 5.3e-21 104.8 122 48.4
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 6.9e-21 104.4 130 46.9
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 9.1e-21 104.0 129 45.7
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 9.1e-21 104.0 130 45.4
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.2e-20 103.6 120 46.7
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 2.0e-20 102.8 120 49.2
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 2.0e-20 102.8 129 45.0
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 2.6e-20 102.4 129 46.5
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 2.6e-20 102.4 121 47.1
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 2.6e-20 102.4 130 46.9
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 2.6e-20 102.4 129 44.2
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 3.4e-20 102.1 129 46.5
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 4.5e-20 101.7 130 46.2
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.9e-20 101.3 127 44.1
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.9e-20 101.3 127 44.1
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 5.9e-20 101.3 129 46.5
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 7.7e-20 100.9 135 43.7
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 7.7e-20 100.9 129 45.7
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 1.3e-19 100.1 121 46.3
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 1.3e-19 100.1 129 45.7
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 1.7e-19 99.8 130 45.4
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.7e-19 99.8 127 45.7
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 2.2e-19 99.4 129 45.7
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 3.8e-19 98.6 128 44.5
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 5.0e-19 98.2 130 44.6
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 5.0e-19 98.2 129 43.4
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 6.5e-19 97.8 130 44.6
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 6.5e-19 97.8 130 45.4
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 8.5e-19 97.4 129 43.4
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 8.5e-19 97.4 121 45.5
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 8.5e-19 97.4 129 45.0
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 1.4e-18 96.7 130 44.6
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 1.9e-18 96.3 123 44.7
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.9e-18 96.3 118 44.9
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 1.9e-18 96.3 129 45.7
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.9e-18 96.3 129 45.7
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 1.9e-18 96.3 131 42.7
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 2.5e-18 95.9 128 44.5
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 2.5e-18 95.9 130 43.1
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 3.2e-18 95.5 121 44.6
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 3.2e-18 95.5 130 43.8
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 4.2e-18 95.1 129 41.9
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 4.2e-18 95.1 129 43.4
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 5.5e-18 94.7 129 45.0
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 5.5e-18 94.7 128 45.3
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 9.4e-18 94.0 130 43.1
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 9.4e-18 94.0 129 43.4
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 9.4e-18 94.0 127 42.5
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 9.4e-18 94.0 128 46.1
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 9.4e-18 94.0 128 43.8
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 1.2e-17 93.6 135 43.0
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 1.6e-17 93.2 132 43.9
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 1.6e-17 93.2 122 45.1
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 2.1e-17 92.8 128 42.2
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 2.1e-17 92.8 128 43.0
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.7e-17 92.4 129 44.2
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 3.6e-17 92.0 134 42.5
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 6.1e-17 91.3 129 44.2
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 8.0e-17 90.9 127 41.7
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 8.0e-17 90.9 124 42.7
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 8.0e-17 90.9 128 45.3
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 1.0e-16 90.5 122 43.4
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.4e-16 90.1 121 44.6
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 1.4e-16 90.1 123 43.9
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 1.4e-16 90.1 128 42.2
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.8e-16 89.7 129 41.1
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 2.3e-16 89.4 132 41.7
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 3.0e-16 89.0 108 47.2
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 3.9e-16 88.6 121 42.1
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 5.2e-16 88.2 130 40.0
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 5.2e-16 88.2 129 41.1
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 5.2e-16 88.2 128 39.8
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 5.2e-16 88.2 125 43.2
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 6.7e-16 87.8 128 42.2
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 2.6e-15 85.9 128 39.8
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 7.4e-15 84.3 126 39.7
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 9.7e-15 84.0 114 44.7
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 2.8e-14 82.4 128 42.2
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 1.1e-13 80.5 121 39.7
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 2.0e-12 76.3 121 36.4
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 5.9e-12 74.7 194 30.4
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 1.0e-11 73.9 121 33.1
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 2.9e-11 72.4 98 43.9
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 3.8e-11 72.0 130 34.6
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 3.8e-11 72.0 164 32.3
BolC5t28869H Brassica oleracea HOM05D000630 ORTHO05D014858 5.0e-11 71.6 49 67.3
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 5.0e-11 71.6 188 31.4
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 1.5e-10 70.1 98 43.9
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 2.5e-10 69.3 130 33.8
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 3.2e-10 68.9 118 37.3
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 3.6e-09 65.5 121 38.0
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 1.0e-08 63.9 102 39.2
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 1.4e-08 63.5 97 40.2
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 3.0e-08 62.4 161 29.8
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 3.0e-08 62.4 97 41.2
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 2.8e-06 55.8 79 44.3
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 8.2e-06 54.3 56 48.2


User provided reference genes

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