Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24538 Brassica carinata HOM05D000231 ORTHO05D000132 2.0e-47 192.2 97 100.0
BcaC03g15166 Brassica carinata HOM05D000231 ORTHO05D000132 1.8e-32 142.5 74 95.9
C02p27390 Brassica napus HOM05D000231 ORTHO05D000132 1.8e-32 142.5 74 95.9
BolC2t08800H Brassica oleracea HOM05D000231 ORTHO05D000132 1.8e-32 142.5 74 95.9
A02p16380 Brassica napus HOM05D000231 ORTHO05D000132 2.0e-31 139.0 74 93.2
BraA02t06697Z Brassica rapa HOM05D000231 ORTHO05D000132 2.0e-31 139.0 74 93.2
Sp5g25340 Schrenkiella parvula HOM05D000231 ORTHO05D000132 6.7e-27 124.0 75 81.3
C06p44070 Brassica napus HOM05D000231 ORTHO05D000132 1.4e-24 116.3 89 69.7
BolC6t39480H Brassica oleracea HOM05D000231 ORTHO05D000132 1.4e-24 116.3 74 78.4
Thhalv10018896m.g Eutrema salsugineum HOM05D000231 ORTHO05D000132 2.4e-24 115.5 87 74.7
BcaB03g14793 Brassica carinata HOM05D000231 ORTHO05D000132 3.1e-24 115.2 87 72.4
BcaB03g14794 Brassica carinata HOM05D000231 ORTHO05D000132 3.1e-24 115.2 87 72.4
BcaC08g46468 Brassica carinata HOM05D000231 ORTHO05D000132 3.1e-24 115.2 77 75.3
AL2G29510 Arabidopsis lyrata HOM05D000231 ORTHO05D000132 1.5e-23 112.8 87 71.3
AT1G70210 Arabidopsis thaliana HOM05D000231 ORTHO05D000132 3.8e-22 108.2 87 70.1
Aa31LG4G10690 Aethionema arabicum HOM05D000231 ORTHO05D000132 6.5e-22 107.5 87 69.0
A07p36670 Brassica napus HOM05D000231 ORTHO05D000132 9.3e-21 103.6 67 79.1
CARHR063330 Cardamine hirsuta HOM05D000231 ORTHO05D000132 1.6e-20 102.8 90 68.9
BraA07t31235Z Brassica rapa HOM05D000231 ORTHO05D000132 4.6e-20 101.3 67 77.6
THA.LOC104822061 Tarenaya hassleriana HOM05D000231 ORTHO05D000132 6.1e-20 100.9 87 66.7
Carub.0002s1691 Capsella rubella HOM05D000231 ORTHO05D000132 3.0e-19 98.6 89 69.7
Sabra10G0067800 Salix brachista HOM05D000231 ORTHO05D000132 7.4e-18 94.0 77 67.5
Manes.05G090600 Manihot esculenta HOM05D000231 ORTHO05D000132 2.8e-17 92.0 86 62.8
Potri.010G095200 Populus trichocarpa HOM05D000231 ORTHO05D000132 2.8e-17 92.0 87 63.2
Manes.01G196900 Manihot esculenta HOM05D000231 ORTHO05D000132 3.7e-17 91.7 86 62.8
Cpa.g.sc5.354 Carica papaya HOM05D000231 ORTHO05D000132 6.3e-17 90.9 86 64.0
Potri.008G146600 Populus trichocarpa HOM05D000231 ORTHO05D000132 8.2e-17 90.5 87 63.2
Cfa009105 Carpinus fangiana HOM05D000231 ORTHO05D000132 3.1e-16 88.6 88 60.2
ClCG09G020690 Citrullus lanatus HOM05D000231 ORTHO05D000132 3.1e-16 88.6 85 60.0
Ciclev10032080m.g Citrus clementina HOM05D000231 ORTHO05D000132 4.1e-16 88.2 84 60.7
Haze_12142 Corylus avellana HOM05D000231 ORTHO05D000132 4.1e-16 88.2 76 64.5
Sabra08G0111500 Salix brachista HOM05D000231 ORTHO05D000132 4.1e-16 88.2 87 62.1
QL03p062401 Quercus lobata HOM05D000231 ORTHO05D000132 5.3e-16 87.8 88 60.2
Duzib251G0957 Durio zibethinus HOM05D000231 ORTHO05D000132 6.9e-16 87.4 90 61.1
Phvul.002G074800 Phaseolus vulgaris HOM05D000231 ORTHO05D000132 9.0e-16 87.0 88 60.2
Duzib248G0367 Durio zibethinus HOM05D000231 ORTHO05D000132 1.2e-15 86.7 90 60.0
VMungo1215G2559 Vigna mungo HOM05D000231 ORTHO05D000132 1.2e-15 86.7 88 60.2
CsaV3_5G025710 Cucumis sativus L. HOM05D000231 ORTHO05D000132 1.5e-15 86.3 85 58.8
MELO3C002910.2 Cucumis melo HOM05D000231 ORTHO05D000132 2.0e-15 85.9 85 58.8
FAN22G1702 Fragaria x ananassa HOM05D000231 ORTHO05D000132 3.4e-15 85.1 86 58.1
Sed0012559 Sechium edule HOM05D000231 ORTHO05D000132 3.4e-15 85.1 85 57.6
Thecc.02G243000 Theobroma cacao HOM05D000231 ORTHO05D000132 4.5e-15 84.7 90 58.9
Lj2g0015622 Lotus japonicus HOM05D000231 ORTHO05D000132 7.7e-15 84.0 80 57.5
TWI75G0906 Tripterygium wilfordii HOM05D000231 ORTHO05D000132 7.7e-15 84.0 90 61.1
CAN.G1341.1 Capsicum annuum HOM05D000231 ORTHO05D000132 1.0e-14 83.6 81 58.0
Atru.chr11.1967 Acer truncatum HOM05D000231 ORTHO05D000132 1.3e-14 83.2 88 61.4
Cc11_g14290 Coffea canephora HOM05D000231 ORTHO05D000132 1.3e-14 83.2 90 54.4
MD13G1087200 Malus domestica HOM05D000231 ORTHO05D000132 1.3e-14 83.2 86 58.1
vmacro16277 Vaccinium macrocarpon HOM05D000231 ORTHO05D000132 1.3e-14 83.2 74 62.2
vmacro16293 Vaccinium macrocarpon HOM05D000231 ORTHO05D000132 1.3e-14 83.2 74 62.2
PGSC0003DMG400015597 Solanum tuberosum HOM05D000231 ORTHO05D000132 2.2e-14 82.4 81 55.6
Nitab4.5_0000257g0270 Nicotiana tabacum HOM05D000231 ORTHO05D000132 2.9e-14 82.0 84 58.3
GSVIVG01020167001 Vitis vinifera HOM05D000231 ORTHO05D000132 2.9e-14 82.0 86 58.1
CiPaw.06G074600 Carya illinoinensis HOM05D000231 ORTHO05D000132 3.8e-14 81.6 86 57.0
TWI18G1109 Tripterygium wilfordii HOM05D000231 ORTHO05D000132 3.8e-14 81.6 89 59.6
COL.COLO4_37906 Corchorus olitorius HOM05D000231 ORTHO05D000132 5.0e-14 81.3 89 56.2
Sopen05g002080 Solanum pennellii HOM05D000231 ORTHO05D000132 5.0e-14 81.3 81 54.3
Dinv31001 Davidia involucrata HOM05D000231 ORTHO05D000132 6.5e-14 80.9 72 61.1
Dinv31102 Davidia involucrata HOM05D000231 ORTHO05D000132 6.5e-14 80.9 72 61.1
Glyma.02G030200 Glycine max HOM05D000231 ORTHO05D000132 6.5e-14 80.9 87 55.2
Rhsim12G0124100 Rhododendron simsii HOM05D000231 ORTHO05D000132 6.5e-14 80.9 75 58.7
TWI36G0152 Tripterygium wilfordii HOM05D000231 ORTHO05D000132 6.5e-14 80.9 89 59.6
CANSAT01G1370 Cannabis sativa HOM05D000231 ORTHO05D000132 1.1e-13 80.1 90 57.8
Lj6C801T11 Lonicera japonica HOM05D000231 ORTHO05D000132 1.1e-13 80.1 86 54.7
Lalb_Chr16g0382471 Lupinus albus HOM05D000231 ORTHO05D000132 1.1e-13 80.1 82 54.9
PGR119G0620 Punica granatum HOM05D000231 ORTHO05D000132 1.1e-13 80.1 74 60.8
Solyc05g006050.3 Solanum lycopersicum HOM05D000231 ORTHO05D000132 1.1e-13 80.1 92 52.2
Nitab4.5_0002156g0020 Nicotiana tabacum HOM05D000231 ORTHO05D000132 1.4e-13 79.7 82 56.1
Glyma.18G133100 Glycine max HOM05D000231 ORTHO05D000132 2.5e-13 79.0 81 58.0
Ca_04626_v3 Cicer arietinum L. HOM05D000231 ORTHO05D000132 3.2e-13 78.6 89 55.1
Glyma.01G035600 Glycine max HOM05D000231 ORTHO05D000132 3.2e-13 78.6 76 59.2
Hma1.2p1_1017F.1_g248205 Hydrangea macrophylla HOM05D000231 ORTHO05D000132 3.2e-13 78.6 86 54.7
Hma1.2p1_1017F.1_g248210 Hydrangea macrophylla HOM05D000231 ORTHO05D000132 3.2e-13 78.6 86 54.7
arahy.Tifrunner.gnm1.ann1.9JV7L8 Arachis hypogaea HOM05D000231 ORTHO05D000132 4.2e-13 78.2 95 51.6
Lalb_Chr05g0217191 Lupinus albus HOM05D000231 ORTHO05D000132 4.2e-13 78.2 94 52.1
Sed0020014 Sechium edule HOM05D000231 ORTHO05D000132 4.2e-13 78.2 74 60.8
Gohir.A03G142200 Gossypium hirsutum HOM05D000231 ORTHO05D000132 5.5e-13 77.8 78 59.0
MD16G1087700 Malus domestica HOM05D000231 ORTHO05D000132 5.5e-13 77.8 87 55.2
Psat4g126480 Pisum sativum HOM05D000231 ORTHO05D000132 9.4e-13 77.0 79 57.0
arahy.Tifrunner.gnm1.ann1.GKYN88 Arachis hypogaea HOM05D000231 ORTHO05D000132 1.2e-12 76.6 95 50.5
Prupe.1G259100 Prunus persica HOM05D000231 ORTHO05D000132 1.2e-12 76.6 73 61.6
CSS0015751 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 1.6e-12 76.3 86 53.5
CSS0034913 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 1.6e-12 76.3 86 53.5
arahy.Tifrunner.gnm1.ann1.FNV3YB Arachis hypogaea HOM05D000231 ORTHO05D000132 2.1e-12 75.9 79 54.4
Glyma.08G291000 Glycine max HOM05D000231 ORTHO05D000132 2.1e-12 75.9 85 55.3
Gohir.D02G165500 Gossypium hirsutum HOM05D000231 ORTHO05D000132 2.1e-12 75.9 78 59.0
Gorai.005G185600 Gossypium raimondii HOM05D000231 ORTHO05D000132 2.1e-12 75.9 78 59.0
Actinidia15008 Actinidia chinensis HOM05D000231 ORTHO05D000132 2.7e-12 75.5 86 51.2
arahy.Tifrunner.gnm1.ann1.KNXH3L Arachis hypogaea HOM05D000231 ORTHO05D000132 2.7e-12 75.5 80 53.8
Dinv24899 Davidia involucrata HOM05D000231 ORTHO05D000132 6.1e-12 74.3 86 53.5
CiPaw.05G146500 Carya illinoinensis HOM05D000231 ORTHO05D000132 7.9e-12 73.9 86 54.7
ECA234G2390 Erigeron canadensis HOM05D000231 ORTHO05D000132 7.9e-12 73.9 90 51.1
Hma1.2p1_0160F.1_g070620 Hydrangea macrophylla HOM05D000231 ORTHO05D000132 7.9e-12 73.9 86 53.5
Lsat_1_v5_gn_4_6361 Lactuca sativa HOM05D000231 ORTHO05D000132 7.9e-12 73.9 86 51.2
Lj4g0026489 Lotus japonicus HOM05D000231 ORTHO05D000132 7.9e-12 73.9 80 56.2
HanXRQChr17g0570181 Helianthus annuus HOM05D000231 ORTHO05D000132 1.0e-11 73.6 86 51.2
Phvul.003G054801 Phaseolus vulgaris HOM05D000231 ORTHO05D000132 1.4e-11 73.2 96 50.0
TPR.G13485 Trifolium pratense HOM05D000231 ORTHO05D000132 1.4e-11 73.2 89 50.6
CsaV3_5G031850 Cucumis sativus L. HOM05D000231 ORTHO05D000132 2.3e-11 72.4 86 53.5
DCAR_026550 Daucus carota HOM05D000231 ORTHO05D000132 2.3e-11 72.4 77 54.5
HanXRQChr04g0103671 Helianthus annuus HOM05D000231 ORTHO05D000132 2.3e-11 72.4 86 51.2
VMungo0251G1824 Vigna mungo HOM05D000231 ORTHO05D000132 2.3e-11 72.4 80 52.5
ClCG05G025060 Citrullus lanatus HOM05D000231 ORTHO05D000132 5.1e-11 71.2 74 54.1
Eucgr.B02557 Eucalyptus grandis HOM05D000231 ORTHO05D000132 5.1e-11 71.2 87 52.9
MELO3C012023.2 Cucumis melo HOM05D000231 ORTHO05D000132 1.1e-10 70.1 73 57.5
Peaxi162Scf00421g00612 Petunia axillaris HOM05D000231 ORTHO05D000132 2.0e-10 69.3 91 50.5
FvH4_4g34970 Fragaria vesca HOM05D000231 ORTHO05D000132 3.3e-10 68.6 57 64.9
FAN07G1909 Fragaria x ananassa HOM05D000231 ORTHO05D000132 3.3e-10 68.6 57 64.9
FAN12G1648 Fragaria x ananassa HOM05D000231 ORTHO05D000132 3.3e-10 68.6 57 64.9
FAN17G1250 Fragaria x ananassa HOM05D000231 ORTHO05D000132 3.3e-10 68.6 57 64.9
RcHm_v2.0_Chr4g0444481 Rosa chinensis HOM05D000231 ORTHO05D000132 4.3e-10 68.2 57 64.9
Medtr8g063120 Medicago truncatula HOM05D000231 ORTHO05D000132 7.4e-10 67.4 98 44.9
Oeu040758.1 Olea europaea HOM05D000231 ORTHO05D000132 7.4e-10 67.4 92 53.3
Nn4g22876 Nelumbo nucifera HOM05D000231 ORTHO05D000132 9.7e-10 67.0 86 48.8
Psat2g114480 Pisum sativum HOM05D000231 ORTHO05D000132 1.7e-09 66.2 89 47.2
TAR374G1582 Trochodendron aralioides HOM05D000231 ORTHO05D000132 2.2e-09 65.9 86 47.7
Oeu001663.1 Olea europaea HOM05D000231 ORTHO05D000132 3.7e-09 65.1 94 51.1
TAR622G0663 Trochodendron aralioides HOM05D000231 ORTHO05D000132 3.7e-09 65.1 77 50.6
TPR.G36566 Trifolium pratense HOM05D000231 ORTHO05D000132 6.3e-09 64.3 81 45.7
Nn3g16972 Nelumbo nucifera HOM05D000231 ORTHO05D000132 1.1e-08 63.5 79 46.8
Aqoxy3G00907 Aquilegia oxysepala HOM05D000231 ORTHO05D000132 1.8e-08 62.8 86 43.0
Lalb_Chr09g0326491 Lupinus albus HOM05D000231 ORTHO05D000132 4.1e-08 61.6 82 46.3
TAR629G1789 Trochodendron aralioides HOM05D000231 ORTHO05D000132 6.9e-08 60.8 86 48.8
CDE10G1184 Ceratophyllum demersum HOM05D000231 ORTHO05D000132 9.1e-08 60.5 88 42.0
Medtr5g035360 Medicago truncatula HOM05D000231 ORTHO05D000132 9.1e-08 60.5 77 44.2
MBI15_g41340_MAGBIO Magnolia biondii HOM05D000231 ORTHO05D000132 1.2e-07 60.1 82 43.9
Actinidia04047 Actinidia chinensis HOM05D000231 ORTHO05D000132 3.4e-07 58.5 66 51.5
CDE05G0841 Ceratophyllum demersum HOM05D000231 ORTHO05D000132 1.0e-06 57.0 88 44.3
Oeu012250.1 Olea europaea HOM05D000231 ORTHO05D000132 1.0e-06 57.0 91 45.1
DCAR_031084 Daucus carota HOM05D000231 ORTHO05D000132 1.7e-06 56.2 86 44.2
DCAR_007101 Daucus carota HOM05D000231 ORTHO05D000132 2.9e-06 55.5 86 46.5
PSO161G0068 Papaver somniferum HOM05D000231 ORTHO05D000132 2.9e-06 55.5 77 46.8
CDE07G1291 Ceratophyllum demersum HOM05D000231 ORTHO05D000132 3.8e-06 55.1 86 41.9
ATR1149G059 Amborella trichopoda HOM05D000231 ORTHO05D000132 8.5e-06 53.9 72 44.4
Sed0020557 Sechium edule HOM05D000231 ORTHO05D000132 8.5e-06 53.9 87 48.3


User provided reference genes

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