Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24522 Brassica carinata HOM05D007954 ORTHO05D010124 4.5e-132 474.6 234 100.0
BcaB05g24523 Brassica carinata HOM05D007954 ORTHO05D010124 8.1e-89 330.9 162 100.0
BcaB05g24528 Brassica carinata HOM05D007954 ORTHO05D010124 5.4e-77 291.6 166 89.2
BcaB06g26987 Brassica carinata HOM05D007954 ORTHO05D010124 6.0e-76 288.1 159 90.6
A02p16350 Brassica napus HOM05D007954 ORTHO05D010124 1.3e-75 287.0 160 89.4
BraA02t06693Z Brassica rapa HOM05D007954 ORTHO05D010124 1.3e-75 287.0 160 89.4
BcaC03g15156 Brassica carinata HOM05D007954 ORTHO05D010124 5.1e-75 285.0 161 88.2
BolC2t08789H Brassica oleracea HOM05D007954 ORTHO05D010124 5.1e-75 285.0 161 88.2
AL2G29370 Arabidopsis lyrata HOM05D007954 ORTHO05D010124 1.9e-61 240.0 161 72.7
BraA07t31216Z Brassica rapa HOM05D007954 ORTHO05D010124 2.4e-56 223.0 173 63.6
Carub.0002s1680 Capsella rubella HOM05D007954 ORTHO05D010124 5.3e-56 221.9 170 68.8
AT1G70040 Arabidopsis thaliana HOM05D007954 ORTHO05D010124 7.6e-55 218.0 156 66.0
BcaC08g46452 Brassica carinata HOM05D007954 ORTHO05D010124 7.6e-55 218.0 173 62.4
AT1G70120 Arabidopsis thaliana HOM05D007954 ORTHO05D010124 3.8e-54 215.7 162 67.9
BcaC08g46453 Brassica carinata HOM05D007954 ORTHO05D010124 7.2e-53 211.5 163 62.0
BolC6t39464H Brassica oleracea HOM05D007954 ORTHO05D010124 7.2e-53 211.5 163 62.0
C06p43900 Brassica napus HOM05D007954 ORTHO05D010124 4.6e-52 208.8 158 63.9
C06p43910 Brassica napus HOM05D007954 ORTHO05D010124 4.6e-52 208.8 158 63.9
CARHR063130 Cardamine hirsuta HOM05D007954 ORTHO05D010124 1.8e-51 206.8 159 64.2
C02p27290 Brassica napus HOM05D007954 ORTHO05D010124 2.3e-51 206.5 161 70.2
BcaB03g14782 Brassica carinata HOM05D007954 ORTHO05D010124 3.9e-51 205.7 163 60.7
A07p36460 Brassica napus HOM05D007954 ORTHO05D010124 6.7e-51 204.9 164 59.8
BolC6t39462H Brassica oleracea HOM05D007954 ORTHO05D010124 6.7e-51 204.9 158 62.7
BraA07t31217Z Brassica rapa HOM05D007954 ORTHO05D010124 6.7e-51 204.9 164 59.8
C06p44270 Brassica napus HOM05D007954 ORTHO05D010124 3.3e-50 202.6 154 63.6
AL2G29310 Arabidopsis lyrata HOM05D007954 ORTHO05D010124 4.3e-50 202.2 146 66.4
BcaC08g46451 Brassica carinata HOM05D007954 ORTHO05D010124 1.0e-46 191.0 149 61.7
AL5G35460 Arabidopsis lyrata HOM05D007954 ORTHO05D010124 3.2e-45 186.0 149 63.1
Carub.0002s1672 Capsella rubella HOM05D007954 ORTHO05D010124 2.3e-43 179.9 154 57.8
A07p36600 Brassica napus HOM05D007954 ORTHO05D010124 2.4e-40 169.9 159 56.6
AL2G29280 Arabidopsis lyrata HOM05D007954 ORTHO05D010124 5.3e-40 168.7 122 64.8
AT3G60700 Arabidopsis thaliana HOM05D007954 ORTHO05D010124 4.5e-39 165.6 153 52.3
AT5G39330 Arabidopsis thaliana HOM05D007954 ORTHO05D010124 2.9e-38 162.9 160 51.2
BraA07t31245Z Brassica rapa HOM05D007954 ORTHO05D010124 4.2e-37 159.1 157 51.0
CARHR063140 Cardamine hirsuta HOM05D007954 ORTHO05D010124 2.7e-36 156.4 140 55.7
Carub.0002s1679 Capsella rubella HOM05D007954 ORTHO05D010124 3.6e-36 156.0 138 60.9
BcaB03g14800 Brassica carinata HOM05D007954 ORTHO05D010124 6.1e-36 155.2 154 53.2
AL7G51140 Arabidopsis lyrata HOM05D007954 ORTHO05D010124 7.9e-36 154.8 167 49.7
Thhalv10019156m.g Eutrema salsugineum HOM05D007954 ORTHO05D010124 8.8e-35 151.4 160 50.0
BcaB05g22706 Brassica carinata HOM05D001308 ORTHO05D010124 2.6e-34 149.8 157 47.8
BraA06t27739Z Brassica rapa HOM05D007954 ORTHO05D010124 3.3e-34 149.4 165 48.5
C06p43920 Brassica napus HOM05D007954 ORTHO05D010124 4.4e-34 149.1 118 60.2
BcaC08g46483 Brassica carinata HOM05D007954 ORTHO05D010124 7.4e-34 148.3 114 62.3
BcaNung01945 Brassica carinata HOM05D007954 ORTHO05D010124 7.4e-34 148.3 166 48.8
BcaNung01944 Brassica carinata HOM05D007954 ORTHO05D010124 1.7e-33 147.1 165 48.5
C07p63390 Brassica napus HOM05D007954 ORTHO05D010124 1.7e-33 147.1 165 48.5
AT1G70020 Arabidopsis thaliana HOM05D007954 ORTHO05D010124 8.2e-33 144.8 161 47.8
AL2G29250 Arabidopsis lyrata HOM05D007954 ORTHO05D010124 9.1e-32 141.4 153 47.1
C01p17490 Brassica napus HOM05D007954 ORTHO05D010124 2.0e-31 140.2 169 47.3
CARHR215600 Cardamine hirsuta HOM05D007954 ORTHO05D010124 2.6e-31 139.8 134 50.7
A07p36450 Brassica napus HOM05D007954 ORTHO05D010124 3.5e-31 139.4 105 63.8
BcaC09g51050 Brassica carinata HOM05D007954 ORTHO05D010124 4.5e-31 139.0 169 47.3
BolC1t01689H Brassica oleracea HOM05D007954 ORTHO05D010124 4.5e-31 139.0 169 47.3
BraA01t01369Z Brassica rapa HOM05D007954 ORTHO05D010124 3.8e-30 136.0 169 46.2
BcaB03g14778 Brassica carinata HOM05D007954 ORTHO05D010124 3.2e-29 132.9 170 48.2
A01p14220 Brassica napus HOM05D007954 ORTHO05D010124 3.2e-29 132.9 169 45.6
Carub.0007s0174 Capsella rubella HOM05D007954 ORTHO05D010124 1.2e-28 131.0 153 45.8
BcaC08g46450 Brassica carinata HOM05D007954 ORTHO05D010124 4.7e-28 129.0 150 46.0
BolC6t39460H Brassica oleracea HOM05D007954 ORTHO05D010124 4.7e-28 129.0 150 46.0
Carub.0007s3660 Capsella rubella HOM05D007954 ORTHO05D010124 6.1e-28 128.6 141 46.1
CARHR063150 Cardamine hirsuta HOM05D007954 ORTHO05D010124 1.0e-27 127.9 121 56.2
CARHR263080 Cardamine hirsuta HOM05D007954 ORTHO05D010124 1.0e-27 127.9 141 49.6
Thhalv10019602m.g Eutrema salsugineum HOM05D007954 ORTHO05D010124 4.8e-25 119.0 94 63.8
BcaB03g15527 Brassica carinata HOM05D007954 ORTHO05D010124 1.2e-23 114.4 152 38.8
A06p48730 Brassica napus HOM05D007954 ORTHO05D010124 2.0e-23 113.6 154 42.9
BraA07t31226Z Brassica rapa HOM05D007954 ORTHO05D010124 2.2e-22 110.2 110 55.5
THA.LOC104822072 Tarenaya hassleriana HOM05D007954 ORTHO05D010124 1.5e-21 107.5 160 38.1
AL2G29390 Arabidopsis lyrata HOM05D007954 ORTHO05D010124 1.9e-21 107.1 71 71.8
C06p43870 Brassica napus HOM05D007954 ORTHO05D010124 1.9e-21 107.1 120 45.8
BcaNung01946 Brassica carinata HOM05D007954 ORTHO05D010124 8.0e-20 101.7 106 50.9
AT3G54410 Arabidopsis thaliana HOM05D007954 ORTHO05D010124 6.3e-17 92.0 91 54.9
BcaB03g15524 Brassica carinata HOM05D007954 ORTHO05D010124 4.5e-15 85.9 114 40.4
AL2G29260 Arabidopsis lyrata HOM05D007954 ORTHO05D010124 1.3e-14 84.3 87 48.3
BcaB03g14781 Brassica carinata HOM05D000629 ORTHO05D000576 3.2e-13 79.7 104 46.2
C06p44000 Brassica napus HOM05D007954 ORTHO05D102319 6.1e-12 75.5 90 51.1
BcaB03g15526 Brassica carinata HOM05D007954 ORTHO05D010124 3.4e-10 69.7 58 51.7
CARHR263070 Cardamine hirsuta HOM05D007954 ORTHO05D010124 4.9e-09 65.9 58 51.7
AT1G10290 Arabidopsis thaliana HOM05D000331 ORTHO05D003399 5.4e-08 62.4 34 91.2
A09p65130 Brassica napus HOM05D000331 ORTHO05D003399 5.4e-08 62.4 34 91.2
BraA09t41856Z Brassica rapa HOM05D000331 ORTHO05D003399 5.4e-08 62.4 34 91.2
AL7G12050 Arabidopsis lyrata HOM05D007954 ORTHO05D080602 7.0e-08 62.0 54 53.7
AL1G21020 Arabidopsis lyrata HOM05D000331 ORTHO05D003399 1.2e-07 61.2 34 88.2
BcaC05g24906 Brassica carinata HOM05D000331 ORTHO05D003399 1.2e-07 61.2 34 88.2
BcaC05g24911 Brassica carinata HOM05D000331 ORTHO05D003399 1.2e-07 61.2 34 88.2
BcaC07g38538 Brassica carinata HOM05D000331 ORTHO05D003399 1.2e-07 61.2 34 88.2
A06p06920 Brassica napus HOM05D000331 ORTHO05D003399 1.2e-07 61.2 34 88.2
C05p08400 Brassica napus HOM05D000331 ORTHO05D003399 1.2e-07 61.2 34 88.2
C08p13560 Brassica napus HOM05D000331 ORTHO05D003399 1.2e-07 61.2 34 88.2
BolC5t29591H Brassica oleracea HOM05D000331 ORTHO05D003399 1.2e-07 61.2 34 88.2
BolC8t48991H Brassica oleracea HOM05D000331 ORTHO05D003399 1.2e-07 61.2 34 88.2
BraA06t23908Z Brassica rapa HOM05D000331 ORTHO05D003399 1.2e-07 61.2 34 88.2
BraA08t35319Z Brassica rapa HOM05D000331 ORTHO05D003399 1.2e-07 61.2 34 88.2
Carub.0001s0968 Capsella rubella HOM05D000331 ORTHO05D003399 1.2e-07 61.2 34 88.2
Thhalv10006739m.g Eutrema salsugineum HOM05D000331 ORTHO05D003399 1.2e-07 61.2 34 88.2
Sp1g08880 Schrenkiella parvula HOM05D000331 ORTHO05D003399 1.2e-07 61.2 34 88.2
CARHR010390 Cardamine hirsuta HOM05D000331 ORTHO05D003399 2.0e-07 60.5 34 88.2
Aa31LG1G4650 Aethionema arabicum HOM05D000331 ORTHO05D003399 3.5e-07 59.7 34 85.3
BcaB08g37343 Brassica carinata HOM05D000331 ORTHO05D003399 3.5e-07 59.7 34 85.3
A07p36780 Brassica napus HOM05D007954 ORTHO05D010124 1.7e-06 57.4 41 63.4
AT1G59610 Arabidopsis thaliana HOM05D000331 ORTHO05D003399 2.3e-06 57.0 34 82.4
Carub.0002s0584 Capsella rubella HOM05D000331 ORTHO05D003399 2.3e-06 57.0 34 82.4
A08p34060 Brassica napus HOM05D000331 ORTHO05D003399 2.9e-06 56.6 35 85.7
THA.LOC104799784 Tarenaya hassleriana HOM05D000331 ORTHO05D003399 3.8e-06 56.2 34 73.5
AL2G17450 Arabidopsis lyrata HOM05D000331 ORTHO05D003399 5.0e-06 55.8 34 79.4
CARHR283780 Cardamine hirsuta HOM05D000331 ORTHO05D003399 5.0e-06 55.8 34 79.4
Gohir.A08G230400 Gossypium hirsutum HOM05D000331 ORTHO05D003399 6.6e-06 55.5 34 79.4
Gohir.D08G250800 Gossypium hirsutum HOM05D000331 ORTHO05D003399 6.6e-06 55.5 34 79.4
Gorai.004G267500 Gossypium raimondii HOM05D000331 ORTHO05D003399 6.6e-06 55.5 34 79.4


User provided reference genes

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