Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 8.2e-86 320.5 176 100.0
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 2.4e-77 292.4 177 92.1
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 2.4e-77 292.4 177 92.1
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 4.2e-74 281.6 177 91.0
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 4.7e-73 278.1 177 90.4
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 4.7e-73 278.1 177 90.4
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 6.8e-64 247.7 181 77.3
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 6.8e-64 247.7 181 77.3
BNapus_Darmor_BZH_scaffold_256p00010 Brassica napus HOM05D005097 ORTHO05D006186 7.5e-63 244.2 157 89.8
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 4.9e-62 241.5 181 78.5
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 1.1e-61 240.4 181 77.9
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 1.8e-61 239.6 181 74.0
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 1.8e-61 239.6 183 78.7
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 2.4e-61 239.2 182 74.7
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 2.4e-61 239.2 182 77.5
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 2.4e-61 239.2 182 74.7
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 9.2e-61 237.3 182 74.2
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 9.2e-61 237.3 182 72.0
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 9.2e-61 237.3 182 74.2
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 4.5e-60 235.0 181 75.1
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 3.3e-50 202.2 181 70.7
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 1.1e-45 187.2 185 63.2
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 3.9e-43 178.7 180 57.8
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 3.9e-43 178.7 180 57.8
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 3.9e-43 178.7 180 57.8
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 1.1e-42 177.2 184 59.8
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 5.6e-42 174.9 177 55.9
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 5.6e-42 174.9 177 55.9
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 6.2e-41 171.4 184 57.6
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 1.1e-40 170.6 185 56.2
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 1.7e-38 163.3 122 77.0
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 7.1e-37 157.9 183 59.6
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 1.0e-35 154.1 177 49.7
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 1.0e-35 154.1 177 49.7
BcaC08g45865 Brassica carinata HOM05D005097 ORTHO05D006186 1.3e-35 153.7 131 71.0
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 8.6e-35 151.0 177 49.2
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 8.6e-35 151.0 177 49.2
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 4.7e-33 145.2 200 51.0
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 4.7e-33 145.2 149 61.7
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 2.4e-32 142.9 128 62.5
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 9.9e-31 137.5 125 63.2
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 3.8e-30 135.6 176 54.0
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 1.2e-28 130.6 82 84.1
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 3.5e-28 129.0 181 51.4
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 1.4e-24 117.1 178 42.7
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 2.4e-24 116.3 123 61.8
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 1.1e-21 107.5 190 44.2
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 1.2e-20 104.0 199 42.7
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 6.0e-20 101.7 187 47.1
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 1.3e-19 100.5 138 50.0
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 3.0e-19 99.4 200 40.0
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 3.9e-19 99.0 170 49.4
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 3.9e-19 99.0 196 41.8
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 5.1e-19 98.6 196 42.9
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 5.1e-19 98.6 196 42.9
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 6.6e-19 98.2 177 44.1
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.5e-18 97.1 196 42.9
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 1.5e-18 97.1 175 40.6
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 1.5e-18 97.1 176 44.9
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 1.9e-18 96.7 189 47.1
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 2.5e-18 96.3 194 43.3
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 2.5e-18 96.3 181 47.5
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 3.3e-18 95.9 210 40.0
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 4.3e-18 95.5 193 47.2
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 4.3e-18 95.5 147 46.9
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 4.3e-18 95.5 190 47.4
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 4.3e-18 95.5 181 42.0
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 4.3e-18 95.5 184 44.0
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 4.3e-18 95.5 179 41.3
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 9.6e-18 94.4 183 40.4
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 9.6e-18 94.4 198 44.4
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.3e-17 94.0 183 41.0
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 1.3e-17 94.0 180 46.7
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 1.6e-17 93.6 175 42.9
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 3.6e-17 92.4 173 41.0
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 8.1e-17 91.3 192 44.8
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 8.1e-17 91.3 204 36.3
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 1.1e-16 90.9 172 43.6
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 1.4e-16 90.5 135 45.2
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 1.8e-16 90.1 200 38.5
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.8e-16 90.1 177 47.5
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 1.8e-16 90.1 145 41.4
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 2.4e-16 89.7 185 41.1
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 2.4e-16 89.7 168 43.5
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 5.3e-16 88.6 185 45.9
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 6.9e-16 88.2 185 44.9
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 6.9e-16 88.2 191 40.8
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 1.2e-15 87.4 182 37.4
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 1.5e-15 87.0 183 37.7
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 2.0e-15 86.7 124 44.4
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 3.4e-15 85.9 185 36.8
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 4.5e-15 85.5 178 39.9
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 4.5e-15 85.5 177 41.2
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 5.8e-15 85.1 193 42.0
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 1.3e-14 84.0 188 41.0
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 1.3e-14 84.0 178 37.6
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 1.7e-14 83.6 132 48.5
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 2.2e-14 83.2 202 37.6
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 2.9e-14 82.8 76 63.2
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 4.9e-14 82.0 201 36.8
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 1.1e-13 80.9 192 41.1
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 1.4e-13 80.5 191 39.3
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 1.4e-13 80.5 165 38.8
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 1.4e-13 80.5 193 36.8
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 1.9e-13 80.1 188 36.7
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 3.2e-13 79.3 183 38.3
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 4.2e-13 79.0 169 39.1
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 5.4e-13 78.6 188 37.2
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 5.4e-13 78.6 171 39.8
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 7.1e-13 78.2 178 42.7
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 9.3e-13 77.8 78 57.7
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 1.2e-12 77.4 190 41.1
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 1.2e-12 77.4 176 39.2
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 1.2e-12 77.4 177 39.0
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 1.6e-12 77.0 81 54.3
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 1.6e-12 77.0 184 38.6
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.6e-12 77.0 183 37.7
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 2.1e-12 76.6 84 57.1
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 2.7e-12 76.3 183 37.7
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 6.0e-12 75.1 180 38.9
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 6.0e-12 75.1 172 40.7
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 1.0e-11 74.3 194 36.1
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 1.3e-11 73.9 185 33.5
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 1.3e-11 73.9 196 36.2
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 1.8e-11 73.6 183 39.3
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 2.3e-11 73.2 166 44.0
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 3.9e-11 72.4 179 35.2
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 5.1e-11 72.0 192 38.0
Sc04g0008280 Simmondsia chinensis HOM05D005097 ORTHO05D006186 6.7e-11 71.6 174 37.9
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 1.1e-10 70.9 193 36.3
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 1.5e-10 70.5 122 41.0
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 1.9e-10 70.1 192 39.6
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.9e-10 70.1 79 49.4
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 3.3e-10 69.3 172 30.8
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 9.6e-10 67.8 177 40.7
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 1.3e-09 67.4 77 53.2
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 1.3e-09 67.4 178 37.6
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 1.6e-09 67.0 134 38.1
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 2.8e-09 66.2 169 36.1
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 6.2e-09 65.1 180 39.4
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.4e-08 63.9 175 33.1
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 2.4e-08 63.2 179 41.3


User provided reference genes

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