Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24479 Brassica carinata HOM05D008316 ORTHO05D017243 1.2e-277 959.5 603 100.0
BcaB07g32749 Brassica carinata HOM05D008316 ORTHO05D013031 1.6e-152 543.9 615 61.8
BcaC05g27750 Brassica carinata HOM05D008825 ORTHO05D013031 1.4e-121 441.0 374 64.7
BcaC08g42812 Brassica carinata HOM05D008825 ORTHO05D013031 1.9e-113 414.1 529 51.8
BcaC01g04710 Brassica carinata HOM05D008825 ORTHO05D013031 1.9e-97 360.9 477 50.3
BcaB02g06748 Brassica carinata HOM05D008316 ORTHO05D005130 1.3e-85 321.6 564 43.8
BcaC06g34855 Brassica carinata HOM05D008316 ORTHO05D005130 2.1e-56 224.6 662 38.8
BcaC08g44739 Brassica carinata HOM05D008316 ORTHO05D005130 5.2e-55 219.9 678 36.6
BcaC04g20935 Brassica carinata HOM05D008316 ORTHO05D005130 1.5e-54 218.4 661 38.0
C05p37400 Brassica napus HOM05D003554 ORTHO05D005130 1.5e-54 218.4 206 56.3
BcaB04g17553 Brassica carinata HOM05D008316 ORTHO05D014956 2.8e-53 214.2 427 40.7
BraA09t38753Z Brassica rapa HOM05D008825 ORTHO05D013031 1.6e-51 208.4 160 71.2
A07p06500 Brassica napus HOM05D008825 ORTHO05D013031 1.5e-49 201.8 134 79.9
C02p14940 Brassica napus HOM05D008316 ORTHO05D021631 4.1e-44 183.7 304 41.8
C03p67180 Brassica napus HOM05D008825 ORTHO05D013031 5.9e-43 179.9 262 49.2
BolC1t03790H Brassica oleracea HOM05D008825 ORTHO05D013031 5.6e-41 173.3 110 82.7
BolC5t32272H Brassica oleracea HOM05D008825 ORTHO05D013031 1.2e-40 172.2 110 81.8
BolC1t04270H Brassica oleracea HOM05D008825 ORTHO05D013031 2.1e-40 171.4 110 81.8
BraA03t14478Z Brassica rapa HOM05D008825 ORTHO05D013031 2.1e-40 171.4 110 81.8
BolC3t19768H Brassica oleracea HOM05D008825 ORTHO05D013031 4.7e-40 170.2 99 88.9
BolC8t47017H Brassica oleracea HOM05D008825 ORTHO05D013031 4.7e-40 170.2 99 88.9
BcaC02g09635 Brassica carinata HOM05D008316 ORTHO05D005130 3.1e-39 167.5 395 37.0
BraA07t28445Z Brassica rapa HOM05D008825 ORTHO05D013031 5.2e-39 166.8 99 87.9
BolC3t15775H Brassica oleracea HOM05D008825 ORTHO05D013031 1.5e-38 165.2 99 86.9
BcaC09g49342 Brassica carinata HOM05D008316 ORTHO05D005130 1.7e-37 161.8 682 35.3
BcaB06g26180 Brassica carinata HOM05D009532 ORTHO05D005130 9.2e-28 129.4 347 34.0
BolC8t48343H Brassica oleracea HOM05D008316 ORTHO05D014956 1.2e-27 129.0 329 42.9
C02p57980 Brassica napus HOM05D017905 ORTHO05D017243 1.3e-26 125.6 254 37.4
BcaB07g32291 Brassica carinata HOM05D008316 ORTHO05D014956 3.0e-26 124.4 346 33.5
Carub.0007s3074 Capsella rubella HOM05D003554 ORTHO05D005130 4.7e-24 117.1 221 37.6
C07p22540 Brassica napus HOM05D008316 ORTHO05D018797 8.1e-24 116.3 248 52.4
C02p14930 Brassica napus HOM05D008316 ORTHO05D014956 1.4e-23 115.5 340 36.2
BcaC07g37291 Brassica carinata HOM05D008316 ORTHO05D005130 1.8e-23 115.2 174 45.4
Aa31sc129G60 Aethionema arabicum HOM05D003554 ORTHO05D005130 2.3e-23 114.8 281 31.0
A08p06560 Brassica napus HOM05D008316 ORTHO05D021631 4.0e-23 114.0 185 46.5
C01p42550 Brassica napus HOM05D008316 ORTHO05D014956 4.0e-23 114.0 173 46.2
BraA08t32671Z Brassica rapa HOM05D008316 ORTHO05D021631 6.8e-23 113.2 155 51.0
AL1G56530 Arabidopsis lyrata HOM05D003554 ORTHO05D005130 1.2e-22 112.5 238 31.5
AL1G56540 Arabidopsis lyrata HOM05D003554 ORTHO05D005130 1.2e-22 112.5 238 31.5
Aa31LG6G9970 Aethionema arabicum HOM05D003554 ORTHO05D005130 2.0e-22 111.7 297 31.0
BraA03t14882Z Brassica rapa HOM05D004128 ORTHO05D008395 2.6e-22 111.3 352 29.8
BcaB05g25144 Brassica carinata HOM05D008316 ORTHO05D005130 4.4e-22 110.5 447 28.4
Carub.0093s0002 Capsella rubella HOM05D003554 ORTHO05D005130 5.8e-22 110.2 294 30.6
Aa31LG10G9030 Aethionema arabicum HOM05D003554 ORTHO05D008395 9.9e-22 109.4 220 32.7
C08p07220 Brassica napus HOM05D008316 ORTHO05D017243 1.7e-21 108.6 66 69.7
C08p07210 Brassica napus HOM05D008316 ORTHO05D018797 2.9e-21 107.8 245 48.2
C07p33860 Brassica napus HOM05D004128 ORTHO05D008395 4.9e-21 107.1 343 30.3
C08p07240 Brassica napus HOM05D008316 ORTHO05D021631 8.4e-21 106.3 132 55.3
C06p22750 Brassica napus HOM05D008316 ORTHO05D018797 3.2e-20 104.4 269 45.0
BcaC08g43125 Brassica carinata HOM05D009532 ORTHO05D013511 7.1e-20 103.2 428 26.9
Carub.0003s2756 Capsella rubella HOM05D003554 ORTHO05D005130 7.1e-20 103.2 198 36.4
BcaC04g20884 Brassica carinata HOM05D009532 ORTHO05D013511 1.2e-19 102.4 438 26.5
BolC8t47837H Brassica oleracea HOM05D004128 ORTHO05D008395 1.6e-19 102.1 376 27.7
BraA09t38864Z Brassica rapa HOM05D003554 ORTHO05D017243 1.6e-19 102.1 66 66.7
BcaB01g01318 Brassica carinata HOM05D004128 ORTHO05D008395 2.7e-19 101.3 131 40.5
A09p33190 Brassica napus HOM05D008316 ORTHO05D018797 3.5e-19 100.9 279 45.5
BolC4t26072H Brassica oleracea HOM05D008316 ORTHO05D018797 4.6e-19 100.5 76 73.7
BraA09t38862Z Brassica rapa HOM05D008316 ORTHO05D018797 1.7e-18 98.6 279 45.2
BolC9t56577H Brassica oleracea HOM05D004128 ORTHO05D008395 3.9e-18 97.4 158 38.0
BolC8t47566H Brassica oleracea HOM05D008316 ORTHO05D018797 5.1e-18 97.1 238 47.1
Carub.0004s0685 Capsella rubella HOM05D003554 ORTHO05D005130 1.5e-17 95.5 180 37.2
A01p14830 Brassica napus HOM05D008825 ORTHO05D099744 4.3e-17 94.0 73 71.2
Aa31sc111G40 Aethionema arabicum HOM05D003554 ORTHO05D005130 7.3e-17 93.2 294 28.9
Carub.0002s0995 Capsella rubella HOM05D003554 ORTHO05D005130 7.3e-17 93.2 224 30.4
C09p42590 Brassica napus HOM05D008825 ORTHO05D017243 9.6e-17 92.8 50 76.0
BcaB07g31822 Brassica carinata HOM05D003554 ORTHO05D032345 1.2e-16 92.4 270 26.7
C05p37380 Brassica napus HOM05D008316 ORTHO05D013031 1.2e-16 92.4 53 88.7
C06p43740 Brassica napus HOM05D008316 ORTHO05D097270 2.1e-16 91.7 250 47.2
C09p42580 Brassica napus HOM05D008316 ORTHO05D024101 2.1e-16 91.7 231 46.8
C03p34630 Brassica napus HOM05D008825 ORTHO05D097937 2.8e-16 91.3 70 71.4
Carub.0003s3367 Capsella rubella HOM05D003554 ORTHO05D005130 4.7e-16 90.5 196 35.7
C01p42540 Brassica napus HOM05D008316 ORTHO05D021631 6.2e-16 90.1 132 53.0
A09p02690 Brassica napus HOM05D008825 ORTHO05D013031 8.1e-16 89.7 65 73.8
BolC7t42789H Brassica oleracea HOM05D008316 ORTHO05D018797 1.1e-15 89.4 228 55.7
Aa31LG1G6440 Aethionema arabicum HOM05D003554 ORTHO05D005130 2.4e-15 88.2 208 31.2
BolC5t31525H Brassica oleracea HOM05D008825 ORTHO05D013031 2.4e-15 88.2 58 79.3
BcaB02g11054 Brassica carinata HOM05D009532 ORTHO05D005130 5.2e-15 87.0 170 34.7
BolC9t56605H Brassica oleracea HOM05D008316 ORTHO05D042521 5.2e-15 87.0 250 46.4
BcaB08g35293 Brassica carinata HOM05D003554 ORTHO05D005130 6.8e-15 86.7 288 28.8
BcaNung01161 Brassica carinata HOM05D007203 ORTHO05D011558 8.9e-15 86.3 136 36.8
BcaC03g14204 Brassica carinata HOM05D008316 ORTHO05D021631 1.5e-14 85.5 133 49.6
Carub.0002s0983 Capsella rubella HOM05D003554 ORTHO05D005130 1.5e-14 85.5 202 30.7
A08p06570 Brassica napus HOM05D008825 ORTHO05D017243 2.0e-14 85.1 50 72.0
BraA08t32673Z Brassica rapa HOM05D008825 ORTHO05D017243 2.0e-14 85.1 50 72.0
BcaB08g35337 Brassica carinata HOM05D003554 ORTHO05D005130 2.6e-14 84.7 297 27.6
Carub.0007s0014 Capsella rubella HOM05D003554 ORTHO05D005130 2.6e-14 84.7 125 39.2
BolC6t35516H Brassica oleracea HOM05D008316 ORTHO05D024101 3.4e-14 84.3 250 39.2
BcaC03g16254 Brassica carinata HOM05D003554 ORTHO05D005130 4.4e-14 84.0 189 33.3
AL2G17330 Arabidopsis lyrata HOM05D003554 ORTHO05D008395 7.6e-14 83.2 253 26.1
BcaB03g16128 Brassica carinata HOM05D003554 ORTHO05D005130 7.6e-14 83.2 271 28.0
Carub.0001s3566 Capsella rubella HOM05D003554 ORTHO05D005130 7.6e-14 83.2 125 39.2
Carub.0006s2609 Capsella rubella HOM05D003554 ORTHO05D005130 7.6e-14 83.2 125 39.2
Carub.0002s1014 Capsella rubella HOM05D003554 ORTHO05D005130 1.3e-13 82.4 212 30.2
Carub.0002s0984 Capsella rubella HOM05D003554 ORTHO05D005130 1.7e-13 82.0 125 39.2
C09p37750 Brassica napus HOM05D008316 ORTHO05D042521 6.4e-13 80.1 200 51.5
Carub.0278s0001 Capsella rubella HOM05D003554 ORTHO05D005130 6.4e-13 80.1 125 37.6
C02p33250 Brassica napus HOM05D003554 ORTHO05D005130 8.4e-13 79.7 201 29.9
Aa31sc454G20 Aethionema arabicum HOM05D003554 ORTHO05D005130 1.1e-12 79.3 174 34.5
C03p67190 Brassica napus HOM05D003554 ORTHO05D005130 1.1e-12 79.3 114 43.9
C04p26230 Brassica napus HOM05D004128 ORTHO05D008395 1.1e-12 79.3 147 35.4
BolC4t24183H Brassica oleracea HOM05D004128 ORTHO05D008395 1.1e-12 79.3 147 35.4
C06p00220 Brassica napus HOM05D003554 ORTHO05D005130 1.4e-12 79.0 114 43.9
BolC5t32273H Brassica oleracea HOM05D003554 ORTHO05D005130 1.4e-12 79.0 114 43.9
C04p23890 Brassica napus HOM05D004128 ORTHO05D008395 1.9e-12 78.6 188 30.9
C04p52520 Brassica napus HOM05D000150 ORTHO05D000108 2.4e-12 78.2 78 62.8
BolC6t38472H Brassica oleracea HOM05D004128 ORTHO05D008395 2.4e-12 78.2 167 32.9
BcaB06g28000 Brassica carinata HOM05D009532 ORTHO05D005130 4.2e-12 77.4 366 29.5
BolC2t07285H Brassica oleracea HOM05D004128 ORTHO05D008395 4.2e-12 77.4 222 30.2
C03p79390 Brassica napus HOM05D017905 ORTHO05D018718 9.3e-12 76.3 134 46.3
BraA07t30708Z Brassica rapa HOM05D004128 ORTHO05D008395 1.6e-11 75.5 127 34.6
BraA10t42724Z Brassica rapa HOM05D004128 ORTHO05D008395 1.6e-11 75.5 251 28.3
BcaB01g02862 Brassica carinata HOM05D003554 ORTHO05D005130 3.5e-11 74.3 331 26.0
BcaC07g39489 Brassica carinata HOM05D009532 ORTHO05D013511 3.5e-11 74.3 227 30.8
C09p42600 Brassica napus HOM05D041675 ORTHO05D039102 3.5e-11 74.3 103 52.4
A07p06510 Brassica napus HOM05D003554 ORTHO05D005130 4.6e-11 73.9 114 42.1
BcaC01g00407 Brassica carinata HOM05D017905 ORTHO05D018718 6.0e-11 73.6 60 65.0
BolC9t56607H Brassica oleracea HOM05D008825 ORTHO05D017243 6.0e-11 73.6 41 75.6
Aa31LG10G9040 Aethionema arabicum HOM05D003554 ORTHO05D005130 7.8e-11 73.2 318 25.5
BolC3t20187H Brassica oleracea HOM05D017905 ORTHO05D018718 1.0e-10 72.8 84 57.1
BraA07t28446Z Brassica rapa HOM05D003554 ORTHO05D005130 1.0e-10 72.8 114 41.2
C07p34800 Brassica napus HOM05D004128 ORTHO05D008395 1.3e-10 72.4 237 30.0
BolC6t38817H Brassica oleracea HOM05D004128 ORTHO05D013239 1.3e-10 72.4 120 36.7
BcaB06g28040 Brassica carinata HOM05D008316 ORTHO05D005130 1.7e-10 72.0 501 25.9
BolC8t50772H Brassica oleracea HOM05D004128 ORTHO05D008395 1.7e-10 72.0 167 31.1
C01p27640 Brassica napus HOM05D004128 ORTHO05D008395 2.3e-10 71.6 205 31.2
BolC9t55613H Brassica oleracea HOM05D004128 ORTHO05D008395 2.3e-10 71.6 248 28.2
C06p16380 Brassica napus HOM05D017905 ORTHO05D018718 3.0e-10 71.2 123 48.0
BraA05t20993Z Brassica rapa HOM05D004128 ORTHO05D008395 3.9e-10 70.9 238 29.4
BcaB04g17902 Brassica carinata HOM05D003554 ORTHO05D005130 5.1e-10 70.5 160 31.2
C01p25840 Brassica napus HOM05D004128 ORTHO05D008395 5.1e-10 70.5 236 29.2
BolC1t02083H Brassica oleracea HOM05D017905 ORTHO05D018718 5.1e-10 70.5 122 47.5
Aa31sc182G60 Aethionema arabicum HOM05D003554 ORTHO05D008395 6.6e-10 70.1 151 35.1
BcaB05g23503 Brassica carinata HOM05D003554 ORTHO05D008395 6.6e-10 70.1 230 29.6
C09p52720 Brassica napus HOM05D004128 ORTHO05D008395 6.6e-10 70.1 77 45.5
BcaB02g11541 Brassica carinata HOM05D003554 ORTHO05D005130 1.5e-09 68.9 282 27.7
BcaB04g17410 Brassica carinata HOM05D003554 ORTHO05D005130 1.5e-09 68.9 279 29.4
BcaC02g08561 Brassica carinata HOM05D008316 ORTHO05D014956 1.5e-09 68.9 92 45.7
BolC4t26823H Brassica oleracea HOM05D008316 ORTHO05D014956 1.5e-09 68.9 92 45.7
C06p01800 Brassica napus HOM05D004128 ORTHO05D008395 2.5e-09 68.2 180 27.8
A08p07770 Brassica napus HOM05D009532 ORTHO05D013511 3.3e-09 67.8 189 30.2
Aa31sc347G20 Aethionema arabicum HOM05D003554 ORTHO05D005130 4.3e-09 67.4 203 25.6
BcaB07g33423 Brassica carinata HOM05D053768 ORTHO05D094113 4.3e-09 67.4 92 53.3
C02p40540 Brassica napus HOM05D007984 ORTHO05D014515 4.3e-09 67.4 86 44.2
C03p49780 Brassica napus HOM05D004128 ORTHO05D008395 4.3e-09 67.4 77 44.2
BolC3t19531H Brassica oleracea HOM05D003554 ORTHO05D005130 4.3e-09 67.4 156 28.8
BcaC05g26951 Brassica carinata HOM05D008825 ORTHO05D094164 7.3e-09 66.6 65 58.5
BcaC08g42899 Brassica carinata HOM05D003554 ORTHO05D005130 7.3e-09 66.6 254 26.8
BcaB05g25218 Brassica carinata HOM05D053768 ORTHO05D092400 9.6e-09 66.2 92 53.3
BcaC09g49872 Brassica carinata HOM05D008825 ORTHO05D015484 9.6e-09 66.2 96 45.8
BolC9t57136H Brassica oleracea HOM05D008316 ORTHO05D013031 9.6e-09 66.2 36 86.1
BolC3t13324H Brassica oleracea HOM05D003554 ORTHO05D008395 1.3e-08 65.9 205 26.3
BcaC07g37797 Brassica carinata HOM05D009532 ORTHO05D013511 1.6e-08 65.5 414 23.4
C09p38200 Brassica napus HOM05D009532 ORTHO05D013511 1.6e-08 65.5 189 30.2
BcaB02g10637 Brassica carinata HOM05D003554 ORTHO05D005130 2.1e-08 65.1 125 33.6
BcaC02g08562 Brassica carinata HOM05D008316 ORTHO05D096263 2.1e-08 65.1 69 59.4
BcaC08g45828 Brassica carinata HOM05D003554 ORTHO05D014926 2.1e-08 65.1 129 33.3
Aa31LG7G10730 Aethionema arabicum HOM05D003554 ORTHO05D008395 2.8e-08 64.7 132 33.3
BraA08t32672Z Brassica rapa HOM05D008316 ORTHO05D014956 2.8e-08 64.7 77 50.6
BcaC01g01745 Brassica carinata HOM05D003554 ORTHO05D014926 3.6e-08 64.3 136 34.6
THA.LOC109117170 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 3.6e-08 64.3 216 25.9
BcaB08g35391 Brassica carinata HOM05D003554 ORTHO05D005130 4.8e-08 63.9 203 29.6
C04p39160 Brassica napus HOM05D004128 ORTHO05D008395 4.8e-08 63.9 77 42.9
BraA06t24764Z Brassica rapa HOM05D009532 ORTHO05D013511 4.8e-08 63.9 144 32.6
BcaB01g01280 Brassica carinata HOM05D003554 ORTHO05D005130 6.2e-08 63.5 196 30.1
BolC8t48188H Brassica oleracea HOM05D009532 ORTHO05D013511 6.2e-08 63.5 189 29.6
Carub.0002s1016 Capsella rubella HOM05D003554 ORTHO05D005130 6.2e-08 63.5 230 27.4
THA.LOC104803192 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 6.2e-08 63.5 235 26.8
BcaB06g26193 Brassica carinata HOM05D003554 ORTHO05D014926 8.1e-08 63.2 115 36.5
C06p04000 Brassica napus HOM05D009532 ORTHO05D013511 1.1e-07 62.8 189 29.6
BolC5t32294H Brassica oleracea HOM05D009532 ORTHO05D013511 1.1e-07 62.8 184 29.3
BolC9t56660H Brassica oleracea HOM05D009532 ORTHO05D013511 1.8e-07 62.0 189 29.1
BcaC01g02271 Brassica carinata HOM05D008825 ORTHO05D015484 2.4e-07 61.6 181 34.3
C06p05550 Brassica napus HOM05D009532 ORTHO05D013511 3.1e-07 61.2 184 31.0
BcaC01g02197 Brassica carinata HOM05D003554 ORTHO05D014926 4.0e-07 60.8 196 30.1
BcaC03g13667 Brassica carinata HOM05D007984 ORTHO05D039917 5.3e-07 60.5 129 34.9
Aa31LG9G11090 Aethionema arabicum HOM05D011111 ORTHO05D001112 1.2e-06 59.3 67 43.3
Aa31LG11G8070 Aethionema arabicum HOM05D003554 ORTHO05D005130 1.5e-06 58.9 158 26.6
BcaB05g23532 Brassica carinata HOM05D008316 ORTHO05D005130 2.0e-06 58.5 337 25.5
BcaC01g00316 Brassica carinata HOM05D003554 ORTHO05D014926 2.0e-06 58.5 106 38.7
BcaC08g45909 Brassica carinata HOM05D003554 ORTHO05D014926 2.0e-06 58.5 127 31.5
BcaB05g21986 Brassica carinata HOM05D008316 ORTHO05D005130 2.6e-06 58.2 468 25.9
Aa31sc538G10 Aethionema arabicum HOM05D003554 ORTHO05D008395 3.4e-06 57.8 86 34.9
BolC3t17148H Brassica oleracea HOM05D014471 ORTHO05D017646 4.5e-06 57.4 78 42.3
BcaB08g34926 Brassica carinata HOM05D007984 ORTHO05D013027 9.9e-06 56.2 119 35.3


User provided reference genes

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