Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24463 Brassica carinata HOM05D009494 ORTHO05D011604 1.8e-63 245.7 126 100.0
A02p15990 Brassica napus HOM05D009494 ORTHO05D011604 2.6e-49 198.7 126 84.1
BcaC03g15096 Brassica carinata HOM05D009494 ORTHO05D011604 5.8e-49 197.6 126 84.1
C02p26570 Brassica napus HOM05D009494 ORTHO05D011604 5.8e-49 197.6 126 84.1
BolC2t08728H Brassica oleracea HOM05D009494 ORTHO05D011604 5.8e-49 197.6 126 84.1
BraA02t06659Z Brassica rapa HOM05D009494 ORTHO05D011604 1.3e-45 186.4 126 80.2
BcaB03g15485 Brassica carinata HOM05D009494 ORTHO05D011604 1.3e-40 169.9 126 71.4
Sp5g24710 Schrenkiella parvula HOM05D009494 ORTHO05D011604 2.9e-40 168.7 126 72.2
BraA07t30782Z Brassica rapa HOM05D009494 ORTHO05D011604 4.6e-38 161.4 126 69.8
BcaC08g45881 Brassica carinata HOM05D009494 ORTHO05D011604 3.0e-37 158.7 126 68.3
BolC6t38790H Brassica oleracea HOM05D009494 ORTHO05D011604 3.0e-37 158.7 126 68.3
C06p36810 Brassica napus HOM05D009494 ORTHO05D011604 2.5e-36 155.6 126 67.5
Thhalv10019320m.g Eutrema salsugineum HOM05D009494 ORTHO05D011604 2.1e-35 152.5 127 67.7
BcaB03g14731 Brassica carinata HOM05D009494 ORTHO05D011604 6.2e-35 151.0 126 70.6
BraA07t31178Z Brassica rapa HOM05D009494 ORTHO05D011604 2.3e-34 149.1 126 69.8
Carub.0002s1626 Capsella rubella HOM05D009494 ORTHO05D011604 4.0e-34 148.3 126 65.9
A07p35950 Brassica napus HOM05D009494 ORTHO05D011604 6.8e-34 147.5 126 69.0
C06p43330 Brassica napus HOM05D009494 ORTHO05D011604 3.4e-33 145.2 121 67.8
BcaC08g46400 Brassica carinata HOM05D009494 ORTHO05D011604 1.7e-32 142.9 126 66.7
BcaNung06224 Brassica carinata HOM05D009494 ORTHO05D011604 1.7e-32 142.9 126 66.7
BolC6t39409H Brassica oleracea HOM05D009494 ORTHO05D011604 1.7e-32 142.9 126 66.7
A07p31500 Brassica napus HOM05D009494 ORTHO05D011604 2.2e-32 142.5 126 65.9
AT1G69588 Arabidopsis thaliana HOM05D009494 ORTHO05D011604 2.9e-32 142.1 126 60.3
Aa31LG4G11160 Aethionema arabicum HOM05D009494 ORTHO05D011604 1.5e-28 129.8 121 58.7
CARHR062540 Cardamine hirsuta HOM05D009494 ORTHO05D011604 1.5e-28 129.8 126 57.9
THA.LOC104822126 Tarenaya hassleriana HOM05D009494 ORTHO05D011604 6.6e-21 104.4 121 50.4
BcaC08g46401 Brassica carinata HOM05D009494 ORTHO05D011604 1.6e-14 83.2 69 69.6
C06p43340 Brassica napus HOM05D009494 ORTHO05D011604 1.6e-14 83.2 69 69.6
BolC6t39411H Brassica oleracea HOM05D009494 ORTHO05D011604 1.6e-14 83.2 69 69.6
THA.LOC104823075 Tarenaya hassleriana HOM05D009494 ORTHO05D011604 2.1e-11 72.8 124 40.3
Ciclev10033178m.g Citrus clementina HOM05D007096 ORTHO05D008288 6.4e-08 61.2 75 45.3
Manes.05G101400 Manihot esculenta HOM05D007096 ORTHO05D008288 8.4e-08 60.8 75 41.3
Cfa008979 Carpinus fangiana HOM05D007096 ORTHO05D008288 9.3e-07 57.4 118 35.6
Potri.010G169300 Populus trichocarpa HOM05D007096 ORTHO05D008288 9.3e-07 57.4 118 32.2
TAR374G0516 Trochodendron aralioides HOM05D007096 ORTHO05D008288 9.3e-07 57.4 76 43.4
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 1.2e-06 57.0 75 40.0
DCAR_031024 Daucus carota HOM05D007096 ORTHO05D008288 1.6e-06 56.6 75 44.0
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 2.1e-06 56.2 113 39.8
Ah.02g129680 Amaranthus hybridus HOM05D007096 ORTHO05D008288 3.5e-06 55.5 75 40.0
Sabra08G0063800 Salix brachista HOM05D007096 ORTHO05D008288 3.5e-06 55.5 76 39.5
Sabra10G0129100 Salix brachista HOM05D007096 ORTHO05D008288 4.6e-06 55.1 75 41.3
Cc00_g23090 Coffea canephora HOM05D007096 ORTHO05D008288 7.9e-06 54.3 120 35.0


User provided reference genes

Program Settings