Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24442 Brassica carinata HOM05D002953 ORTHO05D003249 4.5e-50 201.1 108 100.0
BcaC03g15073 Brassica carinata HOM05D002953 ORTHO05D003249 2.8e-44 181.8 108 88.9
C02p26300 Brassica napus HOM05D002318 ORTHO05D004713 2.9e-41 171.8 107 86.0
BolC2t08700H Brassica oleracea HOM05D002953 ORTHO05D003249 2.9e-41 171.8 102 89.2
A02p15820 Brassica napus HOM05D002953 ORTHO05D003249 1.6e-39 166.0 108 84.3
Sp5g24380 Schrenkiella parvula HOM05D002953 ORTHO05D003249 1.9e-37 159.1 108 78.7
C06p40600 Brassica napus HOM05D002953 ORTHO05D003249 7.4e-37 157.1 108 78.7
Thhalv10019347m.g Eutrema salsugineum HOM05D002953 ORTHO05D003249 2.8e-36 155.2 109 78.0
BolC6t39372H Brassica oleracea HOM05D002953 ORTHO05D003249 3.7e-36 154.8 108 77.8
CARHR062210 Cardamine hirsuta HOM05D002953 ORTHO05D003249 6.9e-35 150.6 108 75.0
A07p35630 Brassica napus HOM05D002318 ORTHO05D004713 4.5e-34 147.9 101 78.2
AL2G28430 Arabidopsis lyrata HOM05D002953 ORTHO05D003249 3.8e-33 144.8 108 72.2
Carub.0002s1592 Capsella rubella HOM05D002953 ORTHO05D003249 3.8e-33 144.8 104 76.0
BraA07t31151Z Brassica rapa HOM05D002318 ORTHO05D004713 6.5e-33 144.1 101 76.2
AT1G69325 Arabidopsis thaliana HOM05D002953 ORTHO05D003249 6.9e-27 124.0 108 66.7
Aa31LG4G11550 Aethionema arabicum HOM05D002953 ORTHO05D003249 2.7e-23 112.1 101 62.4
Ciclev10033969m.g Citrus clementina HOM05D002953 ORTHO05D003249 1.1e-13 80.1 106 44.3
MD13G1065400 Malus domestica HOM05D002953 ORTHO05D003249 1.5e-13 79.7 101 44.6
PGR102G2110 Punica granatum HOM05D002953 ORTHO05D003249 5.7e-13 77.8 105 42.9
Nitab4.5_0000014g0320 Nicotiana tabacum HOM05D002953 ORTHO05D003249 7.4e-13 77.4 101 42.6
QL03p071046 Quercus lobata HOM05D002953 ORTHO05D003249 9.7e-13 77.0 102 42.2
CSS0004001 Camellia sinensis var. sinensis HOM05D002953 ORTHO05D003249 4.8e-12 74.7 102 43.1
Nn3g17381 Nelumbo nucifera HOM05D002953 ORTHO05D003249 6.3e-12 74.3 105 40.0
BcaC05g25290 Brassica carinata HOM05D002953 ORTHO05D003249 1.1e-11 73.6 104 43.3
Nitab4.5_0002806g0030 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.4e-11 73.2 99 46.5
Thhalv10009533m.g Eutrema salsugineum HOM05D002953 ORTHO05D003249 2.4e-11 72.4 107 42.1
Potri.010G160900 Populus trichocarpa HOM05D002953 ORTHO05D003249 3.1e-11 72.0 105 39.0
Sp1g12040 Schrenkiella parvula HOM05D002953 ORTHO05D003249 5.3e-11 71.2 107 41.1
Sopen04g001490 Solanum pennellii HOM05D002953 ORTHO05D003249 5.3e-11 71.2 101 41.6
Sabra10G0122400 Salix brachista HOM05D002953 ORTHO05D003249 7.0e-11 70.9 105 40.0
TWI75G0656 Tripterygium wilfordii HOM05D002953 ORTHO05D003249 7.0e-11 70.9 101 40.6
A08p32200 Brassica napus HOM05D002953 ORTHO05D003249 9.1e-11 70.5 107 41.1
BraA08t35143Z Brassica rapa HOM05D002953 ORTHO05D003249 9.1e-11 70.5 107 41.1
Glyma.01G056000 Glycine max HOM05D002953 ORTHO05D003249 9.1e-11 70.5 99 43.4
TAR622G0728 Trochodendron aralioides HOM05D002953 ORTHO05D003249 1.6e-10 69.7 101 41.6
FAN22G1160 Fragaria x ananassa HOM05D000954 ORTHO05D003249 2.0e-10 69.3 99 40.4
CARHR014290 Cardamine hirsuta HOM05D002953 ORTHO05D003249 3.5e-10 68.6 106 38.7
COL.COLO4_27923 Corchorus olitorius HOM05D002953 ORTHO05D003249 4.5e-10 68.2 102 42.2
Peaxi162Scf00314g00019 Petunia axillaris HOM05D002953 ORTHO05D003249 4.5e-10 68.2 114 37.7
FAN07G2390 Fragaria x ananassa HOM05D000954 ORTHO05D000822 5.9e-10 67.8 104 39.4
THA.LOC104822899 Tarenaya hassleriana HOM05D002953 ORTHO05D003249 5.9e-10 67.8 101 43.6
C05p11700 Brassica napus HOM05D002953 ORTHO05D003249 7.7e-10 67.4 105 41.9
BolC5t29917H Brassica oleracea HOM05D002953 ORTHO05D003249 7.7e-10 67.4 105 41.9
ECA246G1271 Erigeron canadensis HOM05D000773 ORTHO05D000588 7.7e-10 67.4 106 39.6
Oeu016226.1 Olea europaea HOM05D002953 ORTHO05D003249 7.7e-10 67.4 111 39.6
Thecc.02G335300 Theobroma cacao HOM05D002953 ORTHO05D003249 7.7e-10 67.4 101 38.6
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 1.0e-09 67.0 105 41.0
Potri.008G093300 Populus trichocarpa HOM05D002953 ORTHO05D003249 1.0e-09 67.0 105 38.1
Atru.chr11.1683 Acer truncatum HOM05D002953 ORTHO05D003249 1.7e-09 66.2 101 38.6
BcaC07g38708 Brassica carinata HOM05D002953 ORTHO05D003249 1.7e-09 66.2 107 39.3
C08p16380 Brassica napus HOM05D002953 ORTHO05D003249 1.7e-09 66.2 107 39.3
BolC8t49262H Brassica oleracea HOM05D002953 ORTHO05D003249 1.7e-09 66.2 107 39.3
Gohir.D02G128400 Gossypium hirsutum HOM05D002953 ORTHO05D003249 1.7e-09 66.2 102 39.2
Gorai.005G144100 Gossypium raimondii HOM05D002953 ORTHO05D003249 1.7e-09 66.2 102 39.2
Gohir.A03G103200 Gossypium hirsutum HOM05D002953 ORTHO05D003249 2.2e-09 65.9 102 39.2
AUR62007948 Chenopodium quinoa HOM05D002953 ORTHO05D003249 5.0e-09 64.7 135 37.8
VMungo0251G2769 Vigna mungo HOM05D002953 ORTHO05D003249 5.0e-09 64.7 106 37.7
Actinidia19918 Actinidia chinensis HOM05D002953 ORTHO05D003249 6.5e-09 64.3 101 40.6
Lsat_1_v5_gn_3_56140 Lactuca sativa HOM05D002953 ORTHO05D003249 6.5e-09 64.3 96 38.5
Phvul.002G168100 Phaseolus vulgaris HOM05D002953 ORTHO05D003249 8.5e-09 63.9 104 36.5
Cpa.g.sc1.99 Carica papaya HOM05D002953 ORTHO05D003249 1.5e-08 63.2 124 33.9
Glyma.07G226700 Glycine max HOM05D002953 ORTHO05D003249 1.5e-08 63.2 110 36.4
Psat7g135400 Pisum sativum HOM05D002953 ORTHO05D003249 1.5e-08 63.2 106 36.8
Lalb_Chr17g0341061 Lupinus albus HOM05D002953 ORTHO05D003249 1.9e-08 62.8 94 41.5
MD06G1199500 Malus domestica HOM05D002953 ORTHO05D003249 1.9e-08 62.8 101 35.6
Sc11g0002310 Simmondsia chinensis HOM05D002953 ORTHO05D003249 1.9e-08 62.8 104 39.4
Solyc04g005470.3 Solanum lycopersicum HOM05D002953 ORTHO05D003249 1.9e-08 62.8 106 39.6
Sopen05g007380 Solanum pennellii HOM05D002953 ORTHO05D003249 1.9e-08 62.8 113 38.9
AUR62003129 Chenopodium quinoa HOM05D002953 ORTHO05D003249 2.5e-08 62.4 135 37.0
unitig_8.g3188 Utricularia gibba HOM05D002953 ORTHO05D003249 2.5e-08 62.4 101 37.6
Glyma.02G114300 Glycine max HOM05D002953 ORTHO05D003249 3.2e-08 62.0 87 44.8
TPR.G34076 Trifolium pratense HOM05D002953 ORTHO05D003249 4.2e-08 61.6 104 38.5
Ah.03g139130 Amaranthus hybridus HOM05D002953 ORTHO05D003249 9.4e-08 60.5 107 38.3
BraA02t06641Z Brassica rapa HOM05D002953 ORTHO05D003249 9.4e-08 60.5 33 84.8
Peaxi162Scf00187g01311 Petunia axillaris HOM05D002953 ORTHO05D003249 9.4e-08 60.5 89 40.4
Medtr5g043690 Medicago truncatula HOM05D002953 ORTHO05D003249 1.2e-07 60.1 92 35.9
Sabra08G0070100 Salix brachista HOM05D002953 ORTHO05D003249 1.2e-07 60.1 106 37.7
Nitab4.5_0000334g0300 Nicotiana tabacum HOM05D000954 ORTHO05D000822 1.6e-07 59.7 82 45.1
Sed0002075 Sechium edule HOM05D002953 ORTHO05D003249 1.6e-07 59.7 103 37.9
Glyma.20G027100 Glycine max HOM05D002953 ORTHO05D003249 2.1e-07 59.3 106 36.8
Nn4g23349 Nelumbo nucifera HOM05D002953 ORTHO05D003249 2.1e-07 59.3 105 35.2
VMungo1215G1853 Vigna mungo HOM05D002953 ORTHO05D003249 2.1e-07 59.3 99 36.4
ClCG05G023850 Citrullus lanatus HOM05D002953 ORTHO05D003249 2.7e-07 58.9 103 35.9
Eucgr.B03177 Eucalyptus grandis HOM05D002953 ORTHO05D003249 2.7e-07 58.9 101 33.7
RcHm_v2.0_Chr7g0182351 Rosa chinensis HOM05D002953 ORTHO05D003249 2.7e-07 58.9 101 33.7
THA.LOC104807117 Tarenaya hassleriana HOM05D002953 ORTHO05D003249 2.7e-07 58.9 109 36.7
Thecc.03G096500 Theobroma cacao HOM05D002953 ORTHO05D003249 2.7e-07 58.9 102 36.3
Lj4g0014446 Lotus japonicus HOM05D002953 ORTHO05D003249 3.6e-07 58.5 106 35.8
Medtr4g082910 Medicago truncatula HOM05D002953 ORTHO05D003249 3.6e-07 58.5 106 36.8
HPP92_013438 Vanilla planifolia HOM05D002953 ORTHO05D003249 3.6e-07 58.5 94 34.0
FvH4_5g14350 Fragaria vesca HOM05D002953 ORTHO05D003249 6.1e-07 57.8 101 35.6
Gohir.D07G074100 Gossypium hirsutum HOM05D002953 ORTHO05D003249 8.0e-07 57.4 102 35.3
Aqoxy3G00465 Aquilegia oxysepala HOM05D002953 ORTHO05D003249 1.0e-06 57.0 105 34.3
BraA06t24181Z Brassica rapa HOM05D002953 ORTHO05D003249 1.0e-06 57.0 105 41.0
SGA_v2.0_scaffold16G07764 Striga asiatica HOM05D002953 ORTHO05D003249 1.0e-06 57.0 94 39.4
vmacro01327 Vaccinium macrocarpon HOM05D002953 ORTHO05D003249 1.0e-06 57.0 102 38.2
Manes.14G083400 Manihot esculenta HOM05D002953 ORTHO05D003249 1.4e-06 56.6 102 32.4
Ca_18812_v3 Cicer arietinum L. HOM05D002953 ORTHO05D003249 1.8e-06 56.2 106 35.8
Gorai.001G078300 Gossypium raimondii HOM05D002953 ORTHO05D003249 1.8e-06 56.2 102 35.3
Duzib205G1659 Durio zibethinus HOM05D002953 ORTHO05D003249 2.3e-06 55.8 101 31.7
Carub.0001s1362 Capsella rubella HOM05D002953 ORTHO05D003249 4.0e-06 55.1 97 39.2
Medtr3g023650 Medicago truncatula HOM05D002953 ORTHO05D003249 4.0e-06 55.1 101 32.7
Rhsim12G0076400 Rhododendron simsii HOM05D002953 ORTHO05D003249 4.0e-06 55.1 102 37.3
Ah.02g126500 Amaranthus hybridus HOM05D002953 ORTHO05D003249 5.2e-06 54.7 136 31.6
ATR0064G077 Amborella trichopoda HOM05D002953 ORTHO05D003249 5.2e-06 54.7 115 31.3
MELO3C002011.2 Cucumis melo HOM05D002953 ORTHO05D003249 5.2e-06 54.7 101 30.7
ECA234G3661 Erigeron canadensis HOM05D002953 ORTHO05D003249 5.2e-06 54.7 94 37.2
MD16G1063900 Malus domestica HOM05D002953 ORTHO05D003249 6.7e-06 54.3 102 35.3
DCAR_026019 Daucus carota HOM05D002953 ORTHO05D003249 8.8e-06 53.9 102 30.4
THA.LOC104818328 Tarenaya hassleriana HOM05D002953 ORTHO05D003249 8.8e-06 53.9 94 35.1


User provided reference genes

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