Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 2.8e-58 228.4 114 100.0
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 7.3e-43 177.2 114 83.3
BcaC03g14990 Brassica carinata HOM05D005816 ORTHO05D006915 4.7e-42 174.5 114 78.9
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 7.1e-38 160.6 114 75.4
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 7.1e-38 160.6 114 75.4
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 2.3e-36 155.6 115 75.7
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 3.3e-35 151.8 115 75.7
BcaB03g15849 Brassica carinata HOM05D005816 ORTHO05D006915 1.6e-34 149.4 115 72.2
Sp5g23900 Schrenkiella parvula HOM05D005816 ORTHO05D006915 1.6e-34 149.4 115 73.0
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 2.6e-32 142.1 116 69.8
AT1G68795 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 1.7e-28 129.4 114 64.9
Aa31sc79G90 Aethionema arabicum HOM05D005816 ORTHO05D006915 9.9e-24 113.6 113 61.1
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 1.3e-15 86.7 124 46.0
THA.LOC104821965 Tarenaya hassleriana HOM05D005816 ORTHO05D006915 1.3e-15 86.7 125 50.4
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 3.8e-15 85.1 134 44.0
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 6.4e-15 84.3 117 47.9
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 3.2e-14 82.0 120 45.8
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 5.4e-14 81.3 127 41.7
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 5.4e-14 81.3 121 45.5
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 7.1e-14 80.9 114 44.7
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 9.3e-14 80.5 117 45.3
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 2.7e-13 79.0 122 43.4
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 6.0e-13 77.8 115 47.0
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 6.0e-13 77.8 128 45.3
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 2.3e-12 75.9 115 43.5
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 3.9e-12 75.1 118 44.1
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 3.9e-12 75.1 118 44.1
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 3.9e-12 75.1 127 43.3
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 5.1e-12 74.7 119 45.4
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 5.1e-12 74.7 117 44.4
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 6.7e-12 74.3 114 43.0
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 8.7e-12 73.9 115 44.3
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 1.1e-11 73.6 118 44.1
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.1e-11 73.6 118 44.1
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 1.1e-11 73.6 118 46.6
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 1.1e-11 73.6 122 41.8
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 1.1e-11 73.6 108 43.5
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 1.1e-11 73.6 118 47.5
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 1.5e-11 73.2 120 42.5
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 1.9e-11 72.8 131 38.9
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 3.3e-11 72.0 118 45.8
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 5.6e-11 71.2 113 46.0
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 5.6e-11 71.2 116 39.7
MELO3C005357.2 Cucumis melo HOM05D005816 ORTHO05D006915 7.4e-11 70.9 122 43.4
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 1.3e-10 70.1 57 68.4
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 2.1e-10 69.3 119 42.0
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 2.8e-10 68.9 112 40.2
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 2.8e-10 68.9 120 42.5
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 2.8e-10 68.9 121 44.6
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 4.8e-10 68.2 114 41.2
AT1G73965 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 8.1e-10 67.4 56 66.1
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 1.1e-09 67.0 125 40.8
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 1.1e-09 67.0 120 43.3
ClCG01G005730 Citrullus lanatus HOM05D005816 ORTHO05D006915 1.4e-09 66.6 110 42.7
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 1.4e-09 66.6 99 49.5
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.4e-09 66.6 121 42.1
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 1.8e-09 66.2 115 40.0
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 4.0e-09 65.1 116 37.9
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 4.0e-09 65.1 115 44.3
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 5.3e-09 64.7 116 40.5
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 6.9e-09 64.3 57 56.1
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 6.9e-09 64.3 79 50.6
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 1.2e-08 63.5 69 50.7
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 1.5e-08 63.2 127 37.8
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.0e-08 62.8 121 42.1
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 2.0e-08 62.8 121 41.3
Aqoxy3G03898 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 2.6e-08 62.4 118 38.1
HanXRQChr16g0502081 Helianthus annuus HOM05D005816 ORTHO05D006915 2.6e-08 62.4 63 55.6
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 2.6e-08 62.4 123 43.1
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 4.5e-08 61.6 111 41.4
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 4.5e-08 61.6 119 40.3
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 4.5e-08 61.6 116 37.1
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 5.8e-08 61.2 116 39.7
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 5.8e-08 61.2 116 40.5
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 5.8e-08 61.2 126 40.5
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 7.6e-08 60.8 58 55.2
BolC6t39843H Brassica oleracea HOM05D005816 ORTHO05D006915 9.9e-08 60.5 48 64.6
Lsat_1_v5_gn_3_58221 Lactuca sativa HOM05D005816 ORTHO05D006915 1.7e-07 59.7 118 41.5
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 2.9e-07 58.9 60 55.0
Lj5g0018872 Lotus japonicus HOM05D005816 ORTHO05D006915 2.9e-07 58.9 104 44.2
FvH4_5g12751 Fragaria vesca HOM05D005816 ORTHO05D006915 3.8e-07 58.5 120 40.8
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 3.8e-07 58.5 70 51.4
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 3.8e-07 58.5 65 50.8
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 3.8e-07 58.5 65 50.8
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 6.4e-07 57.8 119 42.0
Lj4g0025770 Lotus japonicus HOM05D005816 ORTHO05D006915 8.4e-07 57.4 80 46.2
A07p39820 Brassica napus HOM05D005816 ORTHO05D006915 1.1e-06 57.0 112 39.3
BraA07t31528Z Brassica rapa HOM05D005816 ORTHO05D006915 1.1e-06 57.0 112 39.3
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 1.1e-06 57.0 59 59.3
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 1.1e-06 57.0 121 37.2
MBI16_g06255_MAGBIO Magnolia biondii HOM05D005816 ORTHO05D006915 1.4e-06 56.6 114 36.8
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 1.4e-06 56.6 121 41.3
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 1.4e-06 56.6 126 37.3
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 1.9e-06 56.2 115 38.3
Gohir.D02G116175 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.9e-06 56.2 104 38.5
FAN18G0325 Fragaria x ananassa HOM05D005816 ORTHO05D006915 2.4e-06 55.8 120 40.0
Glyma.17G121800 Glycine max HOM05D005816 ORTHO05D006915 2.4e-06 55.8 127 36.2
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 3.2e-06 55.5 108 38.0
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 3.2e-06 55.5 121 41.3
MELO3C017284.2 Cucumis melo HOM05D005816 ORTHO05D006915 4.2e-06 55.1 88 42.0
Sp5g29165 Schrenkiella parvula HOM05D005816 ORTHO05D006915 4.2e-06 55.1 112 37.5
Lalb_Chr13g0302361 Lupinus albus HOM05D005816 ORTHO05D006915 5.5e-06 54.7 121 38.0
Sc11g0003040 Simmondsia chinensis HOM05D005816 ORTHO05D006915 5.5e-06 54.7 72 52.8
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 7.1e-06 54.3 125 38.4


User provided reference genes

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