Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24389 Brassica carinata HOM05D007757 ORTHO05D009619 3.0e-35 151.4 81 100.0
BcaC03g14960 Brassica carinata HOM05D007757 ORTHO05D009619 1.1e-32 142.9 81 92.6
BcaC08g46271 Brassica carinata HOM05D007757 ORTHO05D009619 7.0e-32 140.2 81 80.2
A07p34900 Brassica napus HOM05D007757 ORTHO05D009619 7.0e-32 140.2 81 80.2
C06p41430 Brassica napus HOM05D007757 ORTHO05D009619 7.0e-32 140.2 81 80.2
BolC6t39280H Brassica oleracea HOM05D007757 ORTHO05D009619 7.0e-32 140.2 81 80.2
BcaB03g15824 Brassica carinata HOM05D007757 ORTHO05D009619 1.6e-31 139.0 81 79.0
Sp5g23570 Schrenkiella parvula HOM05D007757 ORTHO05D009619 3.8e-30 134.4 81 85.2
C02p24780 Brassica napus HOM05D007757 ORTHO05D009619 1.1e-29 132.9 81 87.7
BolC2t08570H Brassica oleracea HOM05D007757 ORTHO05D009619 1.1e-29 132.9 81 87.7
A02p15100 Brassica napus HOM05D007757 ORTHO05D009619 1.9e-29 132.1 81 87.7
BraA02t06576Z Brassica rapa HOM05D007757 ORTHO05D009619 1.9e-29 132.1 81 88.9
Carub.0002s1501 Capsella rubella HOM05D007757 ORTHO05D009619 1.0e-22 109.8 57 78.9
Thhalv10019384m.g Eutrema salsugineum HOM05D007757 ORTHO05D009619 5.6e-21 104.0 48 93.8
AT1G68500 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 1.6e-20 102.4 52 80.8
CARHR061280 Cardamine hirsuta HOM05D007757 ORTHO05D009619 3.6e-20 101.3 85 68.2
AL2G27370 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 8.9e-19 96.7 47 83.0
THA.LOC104800008 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 2.3e-14 82.0 44 72.7
THA.LOC104821934 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 2.3e-14 82.0 44 70.5
TWI75G0183 Tripterygium wilfordii HOM05D007757 ORTHO05D009619 3.0e-14 81.6 52 69.2
Cpa.g.sc1.36 Carica papaya HOM05D007757 ORTHO05D009619 3.9e-14 81.3 52 63.5
Duzib248G1397 Durio zibethinus HOM05D007757 ORTHO05D009619 7.3e-13 77.0 52 59.6
COL.COLO4_37757 Corchorus olitorius HOM05D007757 ORTHO05D009619 1.2e-12 76.3 52 59.6
Haze_17487 Corylus avellana HOM05D007757 ORTHO05D009619 6.2e-12 73.9 48 58.3
Actinidia16654 Actinidia chinensis HOM05D007757 ORTHO05D009619 8.1e-12 73.6 52 53.8
Thecc.02G230200 Theobroma cacao HOM05D007757 ORTHO05D009619 1.4e-11 72.8 52 59.6
TPR.G1503 Trifolium pratense HOM05D007757 ORTHO05D009619 1.4e-11 72.8 52 55.8
CARHR026040 Cardamine hirsuta HOM05D007757 ORTHO05D009619 2.3e-11 72.0 47 68.1
Gorai.002G217900 Gossypium raimondii HOM05D007757 ORTHO05D009619 2.3e-11 72.0 43 62.8
Gohir.D01G175600 Gossypium hirsutum HOM05D007757 ORTHO05D009619 4.0e-11 71.2 43 62.8
Manes.06G067700 Manihot esculenta HOM05D007757 ORTHO05D009619 4.0e-11 71.2 52 51.9
AT1G25422 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 6.8e-11 70.5 50 60.0
Prupe.1G311500 Prunus persica HOM05D007757 ORTHO05D009619 6.8e-11 70.5 55 56.4
CiPaw.15G085600 Carya illinoinensis HOM05D007757 ORTHO05D009619 1.2e-10 69.7 53 52.8
AL1G39890 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 2.6e-10 68.6 48 60.4
Potri.010G124700 Populus trichocarpa HOM05D007757 ORTHO05D009619 2.6e-10 68.6 43 58.1
Migut.E00343 Erythranthe guttata HOM05D007757 ORTHO05D009619 4.4e-10 67.8 46 54.3
Lalb_Chr02g0145961 Lupinus albus HOM05D007757 ORTHO05D009619 4.4e-10 67.8 50 54.0
Actinidia14892 Actinidia chinensis HOM05D007757 ORTHO05D009619 5.8e-10 67.4 45 53.3
Sabra10G0094600 Salix brachista HOM05D007757 ORTHO05D009619 7.5e-10 67.0 53 50.9
Carub.0001s2507 Capsella rubella HOM05D007757 ORTHO05D009619 1.3e-09 66.2 41 68.3
Medtr1g110790 Medicago truncatula HOM05D007757 ORTHO05D009619 1.7e-09 65.9 53 50.9
Cc11_g10120 Coffea canephora HOM05D007757 ORTHO05D009619 2.2e-09 65.5 46 52.2
Lalb_Chr06g0166051 Lupinus albus HOM05D007757 ORTHO05D009619 2.2e-09 65.5 50 56.0
MD13G1041700 Malus domestica HOM05D007757 ORTHO05D009619 2.2e-09 65.5 56 50.0
DCAR_030156 Daucus carota HOM05D007757 ORTHO05D009619 3.7e-09 64.7 53 49.1
Peaxi162Scf00382g00073 Petunia axillaris HOM05D007757 ORTHO05D009619 3.7e-09 64.7 41 58.5
Ca_11172_v3 Cicer arietinum L. HOM05D007757 ORTHO05D009619 4.9e-09 64.3 50 50.0
Gohir.D04G138100 Gossypium hirsutum HOM05D007757 ORTHO05D009619 4.9e-09 64.3 54 51.9
Gorai.012G123000 Gossypium raimondii HOM05D007757 ORTHO05D009619 4.9e-09 64.3 54 51.9
Solyc05g009340.1 Solanum lycopersicum HOM05D007757 ORTHO05D009619 4.9e-09 64.3 45 51.1
MSTRG.2233 Avicennia marina HOM05D007757 ORTHO05D009619 8.3e-09 63.5 53 50.9
BcaB03g14042 Brassica carinata HOM05D007757 ORTHO05D009619 1.1e-08 63.2 44 61.4
BcaC06g35205 Brassica carinata HOM05D007757 ORTHO05D009619 1.1e-08 63.2 44 61.4
A07p12600 Brassica napus HOM05D007757 ORTHO05D009619 1.1e-08 63.2 44 61.4
C07p18700 Brassica napus HOM05D007757 ORTHO05D009619 1.1e-08 63.2 44 61.4
BolC7t42380H Brassica oleracea HOM05D007757 ORTHO05D009619 1.1e-08 63.2 44 61.4
BraA07t29038Z Brassica rapa HOM05D007757 ORTHO05D009619 1.1e-08 63.2 44 61.4
FvH4_4g27340 Fragaria vesca HOM05D007757 ORTHO05D009619 1.1e-08 63.2 56 55.4
FAN12G3266 Fragaria x ananassa HOM05D007757 ORTHO05D009619 1.1e-08 63.2 56 55.4
FAN12G3307 Fragaria x ananassa HOM05D007757 ORTHO05D009619 1.1e-08 63.2 56 55.4
Psat6g227960 Pisum sativum HOM05D007757 ORTHO05D009619 1.1e-08 63.2 50 52.0
RcHm_v2.0_Chr4g0435141 Rosa chinensis HOM05D007757 ORTHO05D009619 1.1e-08 63.2 56 57.1
Sopen05g005100 Solanum pennellii HOM05D007757 ORTHO05D009619 1.1e-08 63.2 44 50.0
VMungo0720G1194 Vigna mungo HOM05D007757 ORTHO05D009619 1.1e-08 63.2 48 50.0
CAN.G610.82 Capsicum annuum HOM05D007757 ORTHO05D009619 1.4e-08 62.8 41 53.7
Sp1g22790 Schrenkiella parvula HOM05D007757 ORTHO05D009619 1.4e-08 62.8 44 61.4
BcaC05g26671 Brassica carinata HOM05D007757 ORTHO05D009619 1.9e-08 62.4 59 52.5
Nitab4.5_0000791g0090 Nicotiana tabacum HOM05D007757 ORTHO05D009619 1.9e-08 62.4 41 56.1
Phvul.007G027400 Phaseolus vulgaris HOM05D007757 ORTHO05D009619 1.9e-08 62.4 44 52.3
CANSAT01G0578 Cannabis sativa HOM05D007757 ORTHO05D009619 2.4e-08 62.0 48 62.5
FAN07G0332 Fragaria x ananassa HOM05D007757 ORTHO05D009619 2.4e-08 62.0 56 55.4
Peaxi162Scf00382g00086 Petunia axillaris HOM05D007757 ORTHO05D009619 4.1e-08 61.2 41 53.7
PGSC0003DMG400014580 Solanum tuberosum HOM05D007757 ORTHO05D009619 4.1e-08 61.2 41 53.7
BcaC05g26463 Brassica carinata HOM05D007757 ORTHO05D009619 1.2e-07 59.7 44 56.8
A09p39320 Brassica napus HOM05D007757 ORTHO05D009619 1.2e-07 59.7 44 56.8
C05p25050 Brassica napus HOM05D007757 ORTHO05D009619 1.2e-07 59.7 44 56.8
BolC5t31238H Brassica oleracea HOM05D007757 ORTHO05D009619 1.2e-07 59.7 44 56.8
BraA09t39435Z Brassica rapa HOM05D007757 ORTHO05D009619 1.2e-07 59.7 44 56.8
Glyma.20G115900 Glycine max HOM05D007757 ORTHO05D009619 2.1e-07 58.9 53 47.2
MD16G1042600 Malus domestica HOM05D007757 ORTHO05D009619 2.1e-07 58.9 61 42.6
Glyma.10G274100 Glycine max HOM05D007757 ORTHO05D009619 4.6e-07 57.8 45 51.1
SGA_v2.0_scaffold36G14535 Striga asiatica HOM05D007757 ORTHO05D009619 1.7e-06 55.8 58 41.4


User provided reference genes

Program Settings