Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 1.8e-93 345.9 169 100.0
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 5.2e-61 238.0 236 57.6
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 8.8e-61 237.3 235 55.7
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 3.5e-57 225.3 235 54.0
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 3.5e-57 225.3 235 54.0
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 3.5e-57 225.3 235 54.0
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 1.7e-56 223.0 235 54.0
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 5.0e-56 221.5 235 53.6
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 5.5e-55 218.0 239 52.7
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 1.2e-54 216.9 240 52.5
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 2.1e-54 216.1 233 53.6
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 1.4e-53 213.4 241 53.5
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 3.0e-53 212.2 235 52.8
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 1.5e-52 209.9 239 50.6
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 1.4e-50 203.4 237 51.9
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 2.7e-41 172.6 123 70.7
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 4.7e-38 161.8 137 65.0
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 2.6e-36 156.0 149 63.8
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 2.2e-35 152.9 147 62.6
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 4.1e-34 148.7 130 65.4
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 7.0e-34 147.9 129 64.3
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.2e-33 147.1 150 61.3
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.2e-33 147.1 150 61.3
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.2e-33 147.1 150 61.3
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 3.5e-33 145.6 132 60.6
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 4.5e-33 145.2 123 65.0
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 4.5e-33 145.2 129 63.6
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 5.9e-33 144.8 134 64.2
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 5.9e-33 144.8 133 60.9
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 7.8e-33 144.4 142 60.6
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 1.3e-32 143.7 147 59.9
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 1.3e-32 143.7 136 61.0
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 1.3e-32 143.7 142 60.6
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 1.7e-32 143.3 139 61.2
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 1.7e-32 143.3 136 61.0
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 2.9e-32 142.5 126 62.7
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 3.9e-32 142.1 126 64.3
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 8.6e-32 141.0 145 60.0
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 1.1e-31 140.6 118 63.6
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 1.5e-31 140.2 127 60.6
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 2.5e-31 139.4 161 55.3
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 3.3e-31 139.0 100 72.0
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 3.3e-31 139.0 135 58.5
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 5.6e-31 138.3 144 57.6
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 9.5e-31 137.5 136 58.1
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 9.5e-31 137.5 147 58.5
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 1.2e-30 137.1 99 71.7
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 1.2e-30 137.1 117 62.4
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.6e-30 136.7 106 67.0
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 3.6e-30 135.6 161 53.4
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 4.7e-30 135.2 147 57.8
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 4.7e-30 135.2 137 59.1
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 6.1e-30 134.8 122 63.9
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 6.1e-30 134.8 143 53.8
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 8.0e-30 134.4 165 54.5
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 8.0e-30 134.4 126 61.9
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 8.0e-30 134.4 132 60.6
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 1.0e-29 134.0 150 52.7
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 1.4e-29 133.7 127 59.1
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 1.4e-29 133.7 124 62.9
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 1.8e-29 133.3 121 63.6
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 4.0e-29 132.1 120 60.0
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 1.2e-28 130.6 143 55.2
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 1.2e-28 130.6 111 65.8
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 1.5e-28 130.2 127 60.6
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 2.0e-28 129.8 165 51.5
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 5.8e-28 128.3 130 56.2
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 7.5e-28 127.9 110 65.5
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 7.5e-28 127.9 134 58.2
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 9.8e-28 127.5 111 64.9
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 1.3e-27 127.1 133 55.6
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 2.9e-27 125.9 113 61.1
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 3.7e-27 125.6 122 59.8
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 4.9e-27 125.2 94 69.1
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 8.3e-27 124.4 138 55.8
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 1.4e-26 123.6 140 54.3
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.4e-26 122.9 150 52.7
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.4e-26 122.9 150 52.7
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 4.1e-26 122.1 182 48.4
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 4.1e-26 122.1 94 70.2
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 5.4e-26 121.7 96 69.8
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 2.0e-25 119.8 118 59.3
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 3.5e-25 119.0 100 62.0
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 4.6e-25 118.6 117 59.0
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 6.0e-25 118.2 138 53.6
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 7.8e-25 117.9 162 48.1
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.0e-24 117.5 139 51.8
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 1.3e-24 117.1 106 62.3
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 1.3e-24 117.1 84 72.6
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 3.0e-24 115.9 157 49.0
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 3.9e-24 115.5 99 62.6
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 8.6e-24 114.4 98 61.2
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 3.3e-23 112.5 129 55.0
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 4.3e-23 112.1 77 74.0
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 4.3e-23 112.1 103 61.2
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 7.3e-23 111.3 96 63.5
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 1.2e-22 110.5 129 51.2
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 1.6e-22 110.2 101 60.4
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 2.8e-22 109.4 69 75.4
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 3.6e-22 109.0 102 61.8
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 3.6e-22 109.0 104 62.5
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 3.6e-22 109.0 96 60.4
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 8.0e-22 107.8 152 48.7
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 1.1e-21 107.5 101 58.4
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 1.4e-21 107.1 105 56.2
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 1.8e-21 106.7 101 62.4
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 2.3e-21 106.3 111 55.9
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 5.2e-21 105.1 110 55.5
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 5.2e-21 105.1 125 54.4
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 5.2e-21 105.1 125 54.4
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 6.8e-21 104.8 104 56.7
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 1.2e-20 104.0 107 57.0
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 1.5e-20 103.6 60 80.0
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 1.5e-20 103.6 99 57.6
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 2.0e-20 103.2 134 50.0
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 2.6e-20 102.8 161 47.2
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 4.4e-20 102.1 130 50.8
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 9.8e-20 100.9 101 61.4
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 9.8e-20 100.9 112 54.5
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 4.9e-19 98.6 103 55.3
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 6.4e-19 98.2 73 71.2
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 4.1e-18 95.5 146 49.3
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 4.1e-18 95.5 151 48.3
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 5.4e-18 95.1 145 47.6
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 5.4e-18 95.1 145 47.6
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 2.7e-17 92.8 138 48.6
BraA02t06569Z Brassica rapa HOM05D004123 ORTHO05D004768 3.0e-16 89.4 159 39.0
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 5.1e-16 88.6 116 48.3
BcaC03g14956 Brassica carinata HOM05D004123 ORTHO05D004768 2.6e-12 76.3 45 77.8
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 2.7e-09 66.2 126 41.3
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 3.5e-09 65.9 54 59.3
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 3.5e-09 65.9 54 59.3
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 3.5e-09 65.9 125 41.6
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 4.6e-09 65.5 66 54.5
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 1.7e-08 63.5 81 45.7
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 6.6e-08 61.6 54 68.5
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.9e-07 60.1 58 51.7
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.9e-07 60.1 55 52.7
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 4.3e-07 58.9 68 52.9
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 4.3e-07 58.9 121 38.0
SEGI_27536 Sequoiadendron giganteum HOM05D004123 ORTHO05D000239 7.3e-07 58.2 76 39.5
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 9.5e-07 57.8 63 47.6
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 1.6e-06 57.0 118 38.1


User provided reference genes

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