Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24381 Brassica carinata HOM05D003082 ORTHO05D003497 2.3e-75 285.4 141 100.0
BcaB06g27069 Brassica carinata HOM05D003082 ORTHO05D003497 1.6e-28 129.8 92 79.3
Sp7g04760 Schrenkiella parvula HOM05D003082 ORTHO05D003497 9.1e-27 124.0 94 74.5
BcaC02g09568 Brassica carinata HOM05D003082 ORTHO05D003497 5.0e-25 118.2 93 74.2
C04p44240 Brassica napus HOM05D003082 ORTHO05D003497 5.0e-25 118.2 93 74.2
A04p10590 Brassica napus HOM05D003082 ORTHO05D003497 1.1e-21 107.1 88 73.9
CARHR215550 Cardamine hirsuta HOM05D003082 ORTHO05D003497 9.7e-21 104.0 90 68.9
BolC4t25997H Brassica oleracea HOM05D003082 ORTHO05D003497 1.3e-20 103.6 89 70.8
BraA04t16722Z Brassica rapa HOM05D003082 ORTHO05D003497 1.3e-20 103.6 88 72.7
Thhalv10027912m.g Eutrema salsugineum HOM05D003082 ORTHO05D003497 2.4e-19 99.4 96 61.5
AL7G46180 Arabidopsis lyrata HOM05D003082 ORTHO05D003497 1.5e-18 96.7 94 61.7
BcaC02g08888 Brassica carinata HOM05D003082 ORTHO05D003497 1.3e-17 93.6 94 63.8
BcaB06g27692 Brassica carinata HOM05D003082 ORTHO05D003497 1.7e-17 93.2 99 60.6
AT5G37475 Arabidopsis thaliana HOM05D003082 ORTHO05D003497 3.8e-17 92.0 94 58.5
Sp5g21120 Schrenkiella parvula HOM05D003082 ORTHO05D003497 5.0e-17 91.7 96 63.5
BcaC03g14729 Brassica carinata HOM05D003082 ORTHO05D003497 2.5e-16 89.4 89 60.7
A07p33090 Brassica napus HOM05D003082 ORTHO05D003497 4.2e-16 88.6 98 57.1
BolC2t08308H Brassica oleracea HOM05D003082 ORTHO05D003497 4.2e-16 88.6 93 58.1
BraA07t30937Z Brassica rapa HOM05D003082 ORTHO05D003497 5.5e-16 88.2 99 56.6
THA.LOC104823823 Tarenaya hassleriana HOM05D003082 ORTHO05D003497 7.2e-16 87.8 90 56.7
BolC6t39029H Brassica oleracea HOM05D003082 ORTHO05D003497 1.2e-15 87.0 98 60.2
THA.LOC104822082 Tarenaya hassleriana HOM05D003082 ORTHO05D003497 1.6e-15 86.7 90 55.6
A04p15210 Brassica napus HOM05D003082 ORTHO05D003497 3.6e-15 85.5 88 61.4
C04p49430 Brassica napus HOM05D003082 ORTHO05D003497 1.8e-14 83.2 90 62.2
BolC4t26528H Brassica oleracea HOM05D003082 ORTHO05D003497 1.8e-14 83.2 90 62.2
Aa31LG9G17590 Aethionema arabicum HOM05D000001 ORTHO05D000003 3.9e-14 82.0 94 53.2
Gohir.D02G056500 Gossypium hirsutum HOM05D003082 ORTHO05D003497 5.2e-14 81.6 92 54.3
BcaC08g46082 Brassica carinata HOM05D003082 ORTHO05D003497 8.8e-14 80.9 98 55.1
BraA02t06402Z Brassica rapa HOM05D003082 ORTHO05D003497 8.8e-14 80.9 90 55.6
Carub.0002s1202 Capsella rubella HOM05D003082 ORTHO05D003497 8.8e-14 80.9 90 57.8
BcaB03g15296 Brassica carinata HOM05D003082 ORTHO05D003497 1.1e-13 80.5 96 56.2
AL2G23680 Arabidopsis lyrata HOM05D003082 ORTHO05D003497 1.5e-13 80.1 91 56.0
Gorai.005G062400 Gossypium raimondii HOM05D003082 ORTHO05D003497 2.0e-13 79.7 92 53.3
Carub.0007s3263 Capsella rubella HOM05D003082 ORTHO05D003497 2.6e-13 79.3 94 55.3
Ciclev10002394m.g Citrus clementina HOM05D003082 ORTHO05D003497 2.6e-13 79.3 92 52.2
QL02p059987 Quercus lobata HOM05D003082 ORTHO05D003497 3.3e-13 79.0 108 44.4
Gohir.A02G051600 Gossypium hirsutum HOM05D003082 ORTHO05D003497 4.4e-13 78.6 92 53.3
CiPaw.05G244300 Carya illinoinensis HOM05D003082 ORTHO05D003497 9.7e-13 77.4 98 48.0
C02p21740 Brassica napus HOM05D003082 ORTHO05D003497 1.3e-12 77.0 85 57.6
MELO3C025123.2 Cucumis melo HOM05D003082 ORTHO05D003497 1.3e-12 77.0 90 54.4
QL01p029277 Quercus lobata HOM05D003082 ORTHO05D003497 1.3e-12 77.0 90 48.9
QL07p034910 Quercus lobata HOM05D003082 ORTHO05D003497 1.3e-12 77.0 91 49.5
Sed0014317 Sechium edule HOM05D003082 ORTHO05D003497 1.3e-12 77.0 90 53.3
Lalb_Chr22g0353931 Lupinus albus HOM05D003082 ORTHO05D003497 1.7e-12 76.6 94 53.2
COL.COLO4_34689 Corchorus olitorius HOM05D003082 ORTHO05D003497 4.8e-12 75.1 91 51.6
Potri.017G138300 Populus trichocarpa HOM05D003082 ORTHO05D003497 4.8e-12 75.1 90 50.0
BcaB05g24148 Brassica carinata HOM05D003082 ORTHO05D003497 6.3e-12 74.7 89 52.8
CsaV3_5G024250 Cucumis sativus L. HOM05D003082 ORTHO05D003497 6.3e-12 74.7 90 53.3
Glyma.16G215500 Glycine max HOM05D003082 ORTHO05D003497 1.1e-11 73.9 94 51.1
Peaxi162Scf00588g01011 Petunia axillaris HOM05D003082 ORTHO05D003497 1.4e-11 73.6 91 48.4
BcaC08g46081 Brassica carinata HOM05D003082 ORTHO05D003497 1.8e-11 73.2 111 49.5
ECA238G3678 Erigeron canadensis HOM05D003082 ORTHO05D003497 1.8e-11 73.2 91 53.8
Lj2g0006781 Lotus japonicus HOM05D003082 ORTHO05D003497 1.8e-11 73.2 94 54.3
Oeu053940.1 Olea europaea HOM05D003082 ORTHO05D003497 1.8e-11 73.2 90 50.0
Aa31LG8G12150 Aethionema arabicum HOM05D003082 ORTHO05D003497 2.4e-11 72.8 101 50.5
TWI60G0785 Tripterygium wilfordii HOM05D003082 ORTHO05D003497 2.4e-11 72.8 90 50.0
Aqoxy5G04053 Aquilegia oxysepala HOM05D003082 ORTHO05D003497 5.3e-11 71.6 90 46.7
CiPaw.06G015400 Carya illinoinensis HOM05D003082 ORTHO05D003497 5.3e-11 71.6 98 45.9
DCAR_019930 Daucus carota HOM05D003082 ORTHO05D003497 1.2e-10 70.5 95 48.4
Glyma.09G165600 Glycine max HOM05D003082 ORTHO05D003497 1.6e-10 70.1 94 48.9
Sed0024856 Sechium edule HOM05D003082 ORTHO05D003497 2.0e-10 69.7 88 48.9
A02p13440 Brassica napus HOM05D003082 ORTHO05D003497 2.6e-10 69.3 82 54.9
CARHR058010 Cardamine hirsuta HOM05D003082 ORTHO05D003497 2.6e-10 69.3 88 54.5
Duzib052G0144 Durio zibethinus HOM05D003082 ORTHO05D003497 2.6e-10 69.3 90 47.8
MSTRG.13183 Avicennia marina HOM05D003082 ORTHO05D003497 4.5e-10 68.6 97 45.4
Lj3A832G16 Lonicera japonica HOM05D003082 ORTHO05D003497 4.5e-10 68.6 76 53.9
Migut.H01515 Erythranthe guttata HOM05D003082 ORTHO05D003497 5.9e-10 68.2 92 47.8
Phvul.004G141100 Phaseolus vulgaris HOM05D003082 ORTHO05D003497 5.9e-10 68.2 95 48.4
TWI74G0632 Tripterygium wilfordii HOM05D003082 ORTHO05D003497 5.9e-10 68.2 92 47.8
Dinv20531 Davidia involucrata HOM05D003082 ORTHO05D003497 7.7e-10 67.8 90 44.4
Nitab4.5_0003574g0100 Nicotiana tabacum HOM05D003082 ORTHO05D003497 7.7e-10 67.8 92 45.7
Potri.004G082200 Populus trichocarpa HOM05D003082 ORTHO05D003497 7.7e-10 67.8 90 48.9
Atru.chr1.1952 Acer truncatum HOM05D003082 ORTHO05D003497 1.0e-09 67.4 89 49.4
ClCG01G008760 Citrullus lanatus HOM05D003082 ORTHO05D003497 1.3e-09 67.0 86 50.0
AT1G66070 Arabidopsis thaliana HOM05D003082 ORTHO05D003497 1.7e-09 66.6 95 48.4
TAR622G0065 Trochodendron aralioides HOM05D003082 ORTHO05D003497 1.7e-09 66.6 90 43.3
Haze_00671 Corylus avellana HOM05D003082 ORTHO05D003497 2.9e-09 65.9 150 36.7
Dinv20511 Davidia involucrata HOM05D003082 ORTHO05D003497 2.9e-09 65.9 89 43.8
TWI15G0329 Tripterygium wilfordii HOM05D003082 ORTHO05D003497 2.9e-09 65.9 90 46.7
CANSAT01G2338 Cannabis sativa HOM05D003082 ORTHO05D003497 3.8e-09 65.5 91 47.3
Cc02_g12480 Coffea canephora HOM05D003082 ORTHO05D003497 5.0e-09 65.1 93 44.1
Gohir.A09G236200 Gossypium hirsutum HOM05D003082 ORTHO05D003497 5.0e-09 65.1 91 50.5
HanXRQChr14g0432091 Helianthus annuus HOM05D003082 ORTHO05D003497 5.0e-09 65.1 92 51.1
Actinidia01599 Actinidia chinensis HOM05D003082 ORTHO05D003497 6.5e-09 64.7 92 42.4
Nitab4.5_0000190g0170 Nicotiana tabacum HOM05D003082 ORTHO05D003497 6.5e-09 64.7 92 44.6
RhsimUnG0060500 Rhododendron simsii HOM05D003082 ORTHO05D003497 6.5e-09 64.7 88 44.3
VMungo0464G0847 Vigna mungo HOM05D003082 ORTHO05D003497 6.5e-09 64.7 94 44.7
Hma1.2p1_0127F.1_g059670 Hydrangea macrophylla HOM05D003082 ORTHO05D003497 8.5e-09 64.3 86 47.7
GSVIVG01000052001 Vitis vinifera HOM05D003082 ORTHO05D003497 1.1e-08 63.9 90 41.1
Dinv06240 Davidia involucrata HOM05D003082 ORTHO05D003497 1.5e-08 63.5 91 44.0
Eucgr.F02897 Eucalyptus grandis HOM05D003082 ORTHO05D003497 1.5e-08 63.5 91 45.1
Lalb_Chr14g0370291 Lupinus albus HOM05D003082 ORTHO05D003497 1.9e-08 63.2 77 54.5
TAR374G0282 Trochodendron aralioides HOM05D003082 ORTHO05D003497 1.9e-08 63.2 90 43.3
Hma1.2p1_0331F.1_g127550 Hydrangea macrophylla HOM05D003082 ORTHO05D003497 2.5e-08 62.8 86 48.8
Atru.chr9.1638 Acer truncatum HOM05D003082 ORTHO05D003497 4.2e-08 62.0 89 47.2
MSTRG.15930 Avicennia marina HOM05D003082 ORTHO05D003497 4.2e-08 62.0 92 43.5
Nitab4.5_0009301g0020 Nicotiana tabacum HOM05D003082 ORTHO05D003497 5.5e-08 61.6 105 42.9
Prupe.5G027300 Prunus persica HOM05D003082 ORTHO05D003497 5.5e-08 61.6 90 46.7
Rhsim10G0103000 Rhododendron simsii HOM05D003082 ORTHO05D003497 7.2e-08 61.2 87 43.7
PGSC0003DMG400022359 Solanum tuberosum HOM05D003082 ORTHO05D003497 7.2e-08 61.2 91 42.9
Aa31LG2G2810 Aethionema arabicum HOM05D000451 ORTHO05D000351 1.2e-07 60.5 94 43.6
Sc14g0006870 Simmondsia chinensis HOM05D003082 ORTHO05D003497 1.2e-07 60.5 92 42.4
Ca_11830_v3 Cicer arietinum L. HOM05D003082 ORTHO05D003497 3.6e-07 58.9 86 46.5
TWI81G0860 Tripterygium wilfordii HOM05D003082 ORTHO05D003497 3.6e-07 58.9 91 46.2
C06p39360 Brassica napus HOM05D003082 ORTHO05D003497 4.7e-07 58.5 94 51.1
CSS0011396 Camellia sinensis var. sinensis HOM05D003082 ORTHO05D003497 4.7e-07 58.5 90 41.1
CSS0020472 Camellia sinensis var. sinensis HOM05D003082 ORTHO05D003497 4.7e-07 58.5 90 41.1
CSS0043531 Camellia sinensis var. sinensis HOM05D003082 ORTHO05D003497 8.0e-07 57.8 94 42.6
Haze_14301 Corylus avellana HOM05D003082 ORTHO05D003497 8.0e-07 57.8 84 42.9
Oeu043695.1 Olea europaea HOM05D003082 ORTHO05D003497 8.0e-07 57.8 87 42.5
Aqoxy3G02868 Aquilegia oxysepala HOM05D003082 ORTHO05D003497 1.0e-06 57.4 92 41.3
MD06G1026500 Malus domestica HOM05D003082 ORTHO05D003497 1.0e-06 57.4 95 43.2
Peaxi162Scf00299g00531 Petunia axillaris HOM05D003082 ORTHO05D003497 1.0e-06 57.4 77 46.8
RcHm_v2.0_Chr7g0211981 Rosa chinensis HOM05D003082 ORTHO05D003497 1.0e-06 57.4 93 44.1
arahy.Tifrunner.gnm1.ann1.W7Y30R Arachis hypogaea HOM05D003082 ORTHO05D003497 1.4e-06 57.0 92 45.7
MSTRG.7294 Avicennia marina HOM05D003082 ORTHO05D003497 1.4e-06 57.0 67 50.7
Nitab4.5_0003465g0050 Nicotiana tabacum HOM05D003082 ORTHO05D003497 1.4e-06 57.0 87 46.0
Actinidia28791 Actinidia chinensis HOM05D003082 ORTHO05D003497 2.3e-06 56.2 101 37.6
Ah.03g147370 Amaranthus hybridus HOM05D003082 ORTHO05D003497 2.3e-06 56.2 89 40.4
Duzib212G0528 Durio zibethinus HOM05D003082 ORTHO05D003497 2.3e-06 56.2 90 42.2
Gohir.A10G167800 Gossypium hirsutum HOM05D003082 ORTHO05D003497 2.3e-06 56.2 92 42.4
Manes.06G016100 Manihot esculenta HOM05D003082 ORTHO05D003497 2.3e-06 56.2 92 44.6
BcaB03g15297 Brassica carinata HOM05D003082 ORTHO05D003497 3.0e-06 55.8 90 51.1
Nn7g36916 Nelumbo nucifera HOM05D003082 ORTHO05D003497 3.0e-06 55.8 90 41.1
Nitab4.5_0012269g0010 Nicotiana tabacum HOM05D003082 ORTHO05D003497 3.0e-06 55.8 91 42.9
Oeu059553.1 Olea europaea HOM05D003082 ORTHO05D003497 4.0e-06 55.5 44 59.1


User provided reference genes

Program Settings