Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24377 Brassica carinata HOM05D003134 ORTHO05D003500 7.2e-75 283.9 148 100.0
BolC2t08556H Brassica oleracea HOM05D003134 ORTHO05D003500 2.0e-72 275.8 148 95.9
C02p24530 Brassica napus HOM05D003134 ORTHO05D003500 1.5e-69 266.2 148 94.6
A02p14980 Brassica napus HOM05D003134 ORTHO05D003500 1.0e-68 263.5 148 92.6
BraA02t06565Z Brassica rapa HOM05D003134 ORTHO05D003500 1.0e-68 263.5 148 92.6
Sp5g23500 Schrenkiella parvula HOM05D003134 ORTHO05D003500 4.1e-62 241.5 149 85.9
A07p32020 Brassica napus HOM05D003134 ORTHO05D003500 4.7e-58 228.0 148 83.1
BraA07t30832Z Brassica rapa HOM05D003134 ORTHO05D003500 4.7e-58 228.0 148 83.1
BcaB03g15416 Brassica carinata HOM05D003134 ORTHO05D003500 5.7e-56 221.1 148 81.8
Thhalv10019521m.g Eutrema salsugineum HOM05D003134 ORTHO05D003500 9.7e-56 220.3 150 82.7
BcaC08g45971 Brassica carinata HOM05D003134 ORTHO05D003500 1.3e-55 219.9 150 80.0
C06p37610 Brassica napus HOM05D003134 ORTHO05D003500 1.3e-55 219.9 150 80.0
BolC6t38864H Brassica oleracea HOM05D003134 ORTHO05D003500 1.3e-55 219.9 150 80.0
BcaB03g15807 Brassica carinata HOM05D003134 ORTHO05D003500 3.8e-52 208.4 148 78.4
BcaC08g46286 Brassica carinata HOM05D003134 ORTHO05D003500 2.7e-50 202.2 148 77.0
C06p41530 Brassica napus HOM05D003134 ORTHO05D003500 9.8e-48 193.7 150 76.0
BolC6t39271H Brassica oleracea HOM05D003134 ORTHO05D003500 9.8e-48 193.7 150 76.0
BcaC08g46282 Brassica carinata HOM05D003134 ORTHO05D003500 4.8e-47 191.4 150 75.3
A07p34840 Brassica napus HOM05D003134 ORTHO05D003500 1.1e-46 190.3 150 74.7
BraA07t31102Z Brassica rapa HOM05D003134 ORTHO05D003500 1.1e-46 190.3 150 74.7
Carub.0002s1492 Capsella rubella HOM05D003134 ORTHO05D003500 5.9e-45 184.5 157 72.0
AL2G27290 Arabidopsis lyrata HOM05D003134 ORTHO05D003500 2.3e-44 182.6 151 71.5
CARHR061210 Cardamine hirsuta HOM05D003134 ORTHO05D003500 3.3e-43 178.7 155 68.4
Aa31LG4G14620 Aethionema arabicum HOM05D003134 ORTHO05D003500 3.8e-36 155.2 158 61.4
AT1G68430 Arabidopsis thaliana HOM05D003134 ORTHO05D003500 3.8e-36 155.2 151 65.6
THA.LOC104808293 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 2.0e-32 142.9 164 55.5
TWI31G0745 Tripterygium wilfordii HOM05D003134 ORTHO05D003500 1.0e-20 104.0 165 46.1
Ciclev10016989m.g Citrus clementina HOM05D003134 ORTHO05D003500 2.3e-20 102.8 170 45.9
Cfa015852 Carpinus fangiana HOM05D003134 ORTHO05D003500 3.9e-20 102.1 155 47.1
Cfa015853 Carpinus fangiana HOM05D003134 ORTHO05D003500 3.9e-20 102.1 155 47.7
Cpa.g.sc65.57 Carica papaya HOM05D003134 ORTHO05D003500 1.5e-19 100.1 166 45.8
Cfa015849 Carpinus fangiana HOM05D003134 ORTHO05D003500 1.9e-19 99.8 155 46.5
Prupe.1G315800 Prunus persica HOM05D003134 ORTHO05D003500 2.5e-19 99.4 150 46.7
Thecc.02G223300 Theobroma cacao HOM05D003134 ORTHO05D003500 3.3e-19 99.0 165 46.7
Manes.06G065600 Manihot esculenta HOM05D003134 ORTHO05D003500 7.3e-19 97.8 157 45.2
COL.COLO4_32156 Corchorus olitorius HOM05D003134 ORTHO05D003500 1.2e-18 97.1 167 44.3
CiPaw.05G241000 Carya illinoinensis HOM05D003134 ORTHO05D003500 1.6e-18 96.7 167 43.7
Gohir.D02G171600 Gossypium hirsutum HOM05D003134 ORTHO05D003500 2.8e-18 95.9 163 46.6
Gorai.005G193000 Gossypium raimondii HOM05D003134 ORTHO05D003500 2.8e-18 95.9 163 46.6
QL01p040313 Quercus lobata HOM05D003134 ORTHO05D003500 2.8e-18 95.9 164 43.9
Sabra10G0091400 Salix brachista HOM05D003134 ORTHO05D003500 3.6e-18 95.5 156 43.6
Duzib251G0591 Durio zibethinus HOM05D003134 ORTHO05D003500 1.4e-17 93.6 163 44.2
MD16G1038900 Malus domestica HOM05D003134 ORTHO05D003500 1.4e-17 93.6 149 42.3
Gohir.A03G148500 Gossypium hirsutum HOM05D003134 ORTHO05D003500 1.5e-16 90.1 159 44.0
Cpa.g.sc170.42 Carica papaya HOM05D003134 ORTHO05D003500 2.0e-16 89.7 169 41.4
CSS0042149 Camellia sinensis var. sinensis HOM05D003134 ORTHO05D003500 2.6e-16 89.4 163 43.6
TAR374G1690 Trochodendron aralioides HOM05D003134 ORTHO05D003500 3.4e-16 89.0 155 43.2
Hma1.2p1_1109F.1_g258190 Hydrangea macrophylla HOM05D003134 ORTHO05D003500 4.4e-16 88.6 158 43.7
Potri.010G121300 Populus trichocarpa HOM05D003134 ORTHO05D003500 1.3e-15 87.0 154 39.0
Sabra04G0066000 Salix brachista HOM05D003134 ORTHO05D003500 1.3e-15 87.0 152 44.1
Lalb_Chr02g0145791 Lupinus albus HOM05D003134 ORTHO05D003500 2.2e-15 86.3 154 43.5
Lsat_1_v5_gn_3_80541 Lactuca sativa HOM05D003134 ORTHO05D003500 2.9e-15 85.9 154 44.8
Nn3g17932 Nelumbo nucifera HOM05D003134 ORTHO05D003500 2.9e-15 85.9 164 40.2
MD13G1036300 Malus domestica HOM05D003134 ORTHO05D003500 3.7e-15 85.5 149 40.9
Oeu012575.1 Olea europaea HOM05D003134 ORTHO05D003500 3.7e-15 85.5 164 41.5
TAR433G0003 Trochodendron aralioides HOM05D003134 ORTHO05D003500 8.3e-15 84.3 154 40.9
Lj4P188T25 Lonicera japonica HOM05D003134 ORTHO05D003500 1.4e-14 83.6 156 43.6
Glyma.20G119200 Glycine max HOM05D003134 ORTHO05D003500 1.9e-14 83.2 150 42.0
MD17G1247700 Malus domestica HOM05D003134 ORTHO05D003500 2.4e-14 82.8 168 40.5
Oeu012577.1 Olea europaea HOM05D003134 ORTHO05D003500 2.4e-14 82.8 161 42.2
Oeu039736.1 Olea europaea HOM05D003134 ORTHO05D003500 2.4e-14 82.8 161 39.8
RcHm_v2.0_Chr4g0434621 Rosa chinensis HOM05D003134 ORTHO05D003500 2.4e-14 82.8 153 43.8
Solyc03g034300.1 Solanum lycopersicum HOM05D003134 ORTHO05D003500 3.2e-14 82.4 157 40.1
SalBow5G3107 Salvia bowleyana HOM05D003134 ORTHO05D003500 4.1e-14 82.0 152 40.1
SalBow5G4218 Salvia bowleyana HOM05D003134 ORTHO05D003500 4.1e-14 82.0 152 40.1
Prupe.3G146400 Prunus persica HOM05D003134 ORTHO05D003500 5.4e-14 81.6 169 40.2
PGSC0003DMG400002449 Solanum tuberosum HOM05D003134 ORTHO05D003500 5.4e-14 81.6 170 36.5
Duzib268G0372 Durio zibethinus HOM05D003134 ORTHO05D003500 7.1e-14 81.3 164 42.1
Ciclev10013038m.g Citrus clementina HOM05D003134 ORTHO05D003500 9.2e-14 80.9 151 40.4
FvH4_4g26860 Fragaria vesca HOM05D003134 ORTHO05D003500 9.2e-14 80.9 151 45.0
PGR042G1462 Punica granatum HOM05D003134 ORTHO05D003500 9.2e-14 80.9 164 39.6
SGA_v2.0_scaffold49G18114 Striga asiatica HOM05D003134 ORTHO05D003500 9.2e-14 80.9 157 40.8
CANSAT01G0067 Cannabis sativa HOM05D003134 ORTHO05D003500 1.2e-13 80.5 176 38.6
Dinv33962 Davidia involucrata HOM05D003134 ORTHO05D003500 1.2e-13 80.5 166 41.0
Rhsim08G0083300 Rhododendron simsii HOM05D003134 ORTHO05D003500 1.2e-13 80.5 160 38.1
FAN22G0900 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.6e-13 80.1 151 45.0
PGR119G2525 Punica granatum HOM05D003134 ORTHO05D003500 1.6e-13 80.1 154 45.5
PGSC0003DMG400024380 Solanum tuberosum HOM05D003134 ORTHO05D003500 1.6e-13 80.1 170 35.9
FAN12G3405 Fragaria x ananassa HOM05D003134 ORTHO05D003500 2.7e-13 79.3 150 44.0
MELO3C008147.2 Cucumis melo HOM05D003134 ORTHO05D003500 3.5e-13 79.0 167 37.7
Medtr1g110190 Medicago truncatula HOM05D003134 ORTHO05D003500 3.5e-13 79.0 152 44.1
CANSAT78G1475 Cannabis sativa HOM05D003134 ORTHO05D003500 4.6e-13 78.6 170 39.4
TPR.G36596 Trifolium pratense HOM05D003134 ORTHO05D003500 4.6e-13 78.6 162 40.1
Atru.chr1.1630 Acer truncatum HOM05D003134 ORTHO05D003500 7.8e-13 77.8 152 36.8
FAN03G2307 Fragaria x ananassa HOM05D003134 ORTHO05D003500 7.8e-13 77.8 166 39.8
Sopen03g007090 Solanum pennellii HOM05D003134 ORTHO05D003500 7.8e-13 77.8 160 38.1
VMungo0720G1250 Vigna mungo HOM05D000260 ORTHO05D000318 1.3e-12 77.0 151 41.7
Dinv34801 Davidia involucrata HOM05D003134 ORTHO05D003500 2.3e-12 76.3 161 39.8
Manes.01G112200 Manihot esculenta HOM05D003134 ORTHO05D003500 3.0e-12 75.9 161 40.4
Solyc02g086260.1 Solanum lycopersicum HOM05D003134 ORTHO05D003500 3.0e-12 75.9 163 39.9
Cc07_g08620 Coffea canephora HOM05D003134 ORTHO05D003500 3.9e-12 75.5 170 38.2
Sc10g0001080 Simmondsia chinensis HOM05D003134 ORTHO05D003500 3.9e-12 75.5 161 37.9
CsaV3_2G033780 Cucumis sativus L. HOM05D003134 ORTHO05D003500 5.1e-12 75.1 170 37.1
Oeu008433.1 Olea europaea HOM05D003134 ORTHO05D003500 5.1e-12 75.1 163 35.6
ClCG11G007810 Citrullus lanatus HOM05D003134 ORTHO05D003500 6.6e-12 74.7 164 36.0
Migut.H00233 Erythranthe guttata HOM05D003134 ORTHO05D003500 6.6e-12 74.7 168 38.7
Potri.008G123800 Populus trichocarpa HOM05D003134 ORTHO05D003500 6.6e-12 74.7 101 49.5
SalBow3G2725 Salvia bowleyana HOM05D003134 ORTHO05D003500 6.6e-12 74.7 153 39.2
FAN14G3652 Fragaria x ananassa HOM05D003134 ORTHO05D003500 8.6e-12 74.3 162 38.3
Glyma.02G088600 Glycine max HOM05D003134 ORTHO05D003500 8.6e-12 74.3 161 40.4
Phvul.007G030600 Phaseolus vulgaris HOM05D003134 ORTHO05D003500 1.1e-11 73.9 151 42.4
Potri.017G117866 Populus trichocarpa HOM05D003134 ORTHO05D003500 1.5e-11 73.6 152 40.8
Sed0003377 Sechium edule HOM05D003134 ORTHO05D003500 1.5e-11 73.6 153 35.9
Actinidia17642 Actinidia chinensis HOM05D003134 ORTHO05D003500 1.9e-11 73.2 149 40.3
EL10Ac2g04546 Beta vulgaris HOM05D003134 ORTHO05D003500 1.9e-11 73.2 170 36.5
Manes.02G070500 Manihot esculenta HOM05D003134 ORTHO05D003500 1.9e-11 73.2 158 36.7
Psat3g098080 Pisum sativum HOM05D003134 ORTHO05D003500 1.9e-11 73.2 164 37.8
TAR622G0779 Trochodendron aralioides HOM05D003134 ORTHO05D003500 1.9e-11 73.2 156 37.2
TAR622G1269 Trochodendron aralioides HOM05D003134 ORTHO05D003500 1.9e-11 73.2 156 37.2
Ca_08085_v3 Cicer arietinum L. HOM05D003134 ORTHO05D003500 2.5e-11 72.8 160 36.2
DCAR_021449 Daucus carota HOM05D003134 ORTHO05D003500 2.5e-11 72.8 161 39.1
Sed0007756 Sechium edule HOM05D003134 ORTHO05D003500 2.5e-11 72.8 160 38.1
Gohir.D11G171400 Gossypium hirsutum HOM05D003134 ORTHO05D003500 3.3e-11 72.4 167 35.3
Gorai.007G183800 Gossypium raimondii HOM05D003134 ORTHO05D003500 3.3e-11 72.4 167 35.3
unitig_0.g841 Utricularia gibba HOM05D003134 ORTHO05D003500 3.3e-11 72.4 148 37.8
ClCG01G005860 Citrullus lanatus HOM05D003134 ORTHO05D003500 4.3e-11 72.0 154 39.0
FAN07G2257 Fragaria x ananassa HOM05D003134 ORTHO05D003500 4.3e-11 72.0 147 42.2
Medtr7g082520 Medicago truncatula HOM05D003134 ORTHO05D003500 4.3e-11 72.0 161 36.6
Oeu036853.1 Olea europaea HOM05D003134 ORTHO05D003500 4.3e-11 72.0 161 36.0
AUR62009019 Chenopodium quinoa HOM05D003134 ORTHO05D003500 5.6e-11 71.6 175 38.9
FAN01G0579 Fragaria x ananassa HOM05D003134 ORTHO05D003500 5.6e-11 71.6 164 38.4
FAN17G2365 Fragaria x ananassa HOM05D003134 ORTHO05D003500 5.6e-11 71.6 149 39.6
Gohir.A11G165400 Gossypium hirsutum HOM05D003134 ORTHO05D003500 5.6e-11 71.6 167 35.3
Peaxi162Scf00104g00142 Petunia axillaris HOM05D003134 ORTHO05D003500 5.6e-11 71.6 150 41.3
Glyma.18G294900 Glycine max HOM05D003134 ORTHO05D003500 7.3e-11 71.2 160 38.8
CsaV3_5G028830 Cucumis sativus L. HOM05D003134 ORTHO05D003500 9.5e-11 70.9 161 39.8
Psat6g225360 Pisum sativum HOM05D003134 ORTHO05D003500 1.2e-10 70.5 155 41.9
Sp5g21880 Schrenkiella parvula HOM05D003134 ORTHO05D003500 2.1e-10 69.7 166 37.3
Lj5g0013847 Lotus japonicus HOM05D003134 ORTHO05D003500 3.6e-10 68.9 165 38.2
Oeu030792.1 Olea europaea HOM05D000260 ORTHO05D000318 3.6e-10 68.9 148 35.8
RcHm_v2.0_Chr1g0326241 Rosa chinensis HOM05D003134 ORTHO05D003500 3.6e-10 68.9 174 36.2
Ah.16g101650 Amaranthus hybridus HOM05D003134 ORTHO05D003500 4.7e-10 68.6 164 36.6
Lj1g0014230 Lotus japonicus HOM05D003134 ORTHO05D003500 4.7e-10 68.6 171 36.3
Sp7g03820 Schrenkiella parvula HOM05D003134 ORTHO05D003500 4.7e-10 68.6 167 38.9
AUR62023283 Chenopodium quinoa HOM05D003134 ORTHO05D003500 6.2e-10 68.2 172 37.2
FAN02G1640 Fragaria x ananassa HOM05D003134 ORTHO05D003500 6.2e-10 68.2 163 38.0
FAN10G2348 Fragaria x ananassa HOM05D003134 ORTHO05D003500 6.2e-10 68.2 162 37.7
Nitab4.5_0015828g0010 Nicotiana tabacum HOM05D003134 ORTHO05D003500 6.2e-10 68.2 166 36.1
Haze_14180 Corylus avellana HOM05D003134 ORTHO05D003500 8.1e-10 67.8 176 38.1
Potri.004G097200 Populus trichocarpa HOM05D003134 ORTHO05D003500 8.1e-10 67.8 152 37.5
VMungo1383G0351 Vigna mungo HOM05D003134 ORTHO05D003500 8.1e-10 67.8 170 35.9
Cfa007900 Carpinus fangiana HOM05D003134 ORTHO05D003500 1.1e-09 67.4 178 34.8
HanXRQChr12g0375681 Helianthus annuus HOM05D003134 ORTHO05D003500 1.4e-09 67.0 161 37.9
MBI16_g37123_MAGBIO Magnolia biondii HOM05D003134 ORTHO05D003500 1.4e-09 67.0 161 36.0
PSO170G0811 Papaver somniferum HOM05D003134 ORTHO05D003500 1.4e-09 67.0 171 35.1
Lalb_Chr10g0091341 Lupinus albus HOM05D003134 ORTHO05D003500 1.8e-09 66.6 159 38.4
Nitab4.5_0000625g0110 Nicotiana tabacum HOM05D003134 ORTHO05D003500 2.4e-09 66.2 166 36.1
ATR1125G046 Amborella trichopoda HOM05D003134 ORTHO05D003500 3.1e-09 65.9 169 34.9
Duzib138G0856 Durio zibethinus HOM05D003134 ORTHO05D003500 3.1e-09 65.9 169 33.1
CiPaw.03G063500 Carya illinoinensis HOM05D003134 ORTHO05D003500 4.0e-09 65.5 185 33.5
Nitab4.5_0000753g0120 Nicotiana tabacum HOM05D003134 ORTHO05D003500 4.0e-09 65.5 112 42.9
Migut.L00500 Erythranthe guttata HOM05D003134 ORTHO05D003500 5.2e-09 65.1 173 37.0
FvH4_7g03610 Fragaria vesca HOM05D003134 ORTHO05D003500 5.2e-09 65.1 166 38.0
FAN06G4960 Fragaria x ananassa HOM05D003134 ORTHO05D003500 5.2e-09 65.1 166 38.0
FAN12G3727 Fragaria x ananassa HOM05D003134 ORTHO05D003500 5.2e-09 65.1 98 49.0
THA.LOC104823851 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 5.2e-09 65.1 159 37.1
C06p43260 Brassica napus HOM05D003134 ORTHO05D003500 6.8e-09 64.7 165 35.8
FAN10G3294 Fragaria x ananassa HOM05D000266 ORTHO05D000765 6.8e-09 64.7 164 37.2
FAN23G1965 Fragaria x ananassa HOM05D003134 ORTHO05D003500 6.8e-09 64.7 161 36.0
PSO017G0284 Papaver somniferum HOM05D003134 ORTHO05D003500 8.9e-09 64.3 168 35.1
FAN28G2684 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.2e-08 63.9 162 37.7
Lsat_1_v5_gn_2_81120 Lactuca sativa HOM05D003134 ORTHO05D003500 1.2e-08 63.9 162 35.2
THA.LOC104805579 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 1.2e-08 63.9 177 34.5
FAN16G3541 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.5e-08 63.5 162 37.7
MELO3C005343.2 Cucumis melo HOM05D003134 ORTHO05D003500 2.0e-08 63.2 162 38.3
Peaxi162Scf00394g00095 Petunia axillaris HOM05D003134 ORTHO05D003500 2.0e-08 63.2 109 43.1
Sed0004988 Sechium edule HOM05D003134 ORTHO05D003500 2.0e-08 63.2 153 37.9
BcaB03g15220 Brassica carinata HOM05D003134 ORTHO05D003500 2.6e-08 62.8 169 36.7
Thhalv10019248m.g Eutrema salsugineum HOM05D003134 ORTHO05D003500 3.4e-08 62.4 167 35.9
Duzib133G1507 Durio zibethinus HOM05D003134 ORTHO05D003500 4.4e-08 62.0 174 32.2
Phvul.008G007800 Phaseolus vulgaris HOM05D003134 ORTHO05D003500 4.4e-08 62.0 158 38.0
BraA07t30998Z Brassica rapa HOM05D003134 ORTHO05D003500 9.9e-08 60.8 167 36.5
Haze_24605 Corylus avellana HOM05D003134 ORTHO05D003500 1.3e-07 60.5 49 67.3
QL02p049588 Quercus lobata HOM05D003134 ORTHO05D003500 1.3e-07 60.5 182 34.1
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 1.3e-07 60.5 105 41.9
A07p33710 Brassica napus HOM05D003134 ORTHO05D003500 2.2e-07 59.7 168 36.3
QL02p050634 Quercus lobata HOM05D003134 ORTHO05D003500 4.9e-07 58.5 183 32.2
Aa31LG2G3400 Aethionema arabicum HOM05D003134 ORTHO05D003500 6.4e-07 58.2 179 32.4
Phvul.004G066700 Phaseolus vulgaris HOM05D003134 ORTHO05D003500 6.4e-07 58.2 144 36.1
BcaC08g46122 Brassica carinata HOM05D003134 ORTHO05D003500 8.4e-07 57.8 166 35.5
ECA238G3055 Erigeron canadensis HOM05D003134 ORTHO05D003500 8.4e-07 57.8 164 34.1
Lalb_Chr06g0165891 Lupinus albus HOM05D003134 ORTHO05D003500 8.4e-07 57.8 53 62.3
AL2G25140 Arabidopsis lyrata HOM05D003134 ORTHO05D003500 1.4e-06 57.0 164 34.8
Nn4g23933 Nelumbo nucifera HOM05D003134 ORTHO05D003500 2.4e-06 56.2 162 29.6
Ah.10g037670 Amaranthus hybridus HOM05D003134 ORTHO05D003500 3.2e-06 55.8 164 32.9


User provided reference genes

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