Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24366 Brassica carinata HOM05D007903 ORTHO05D009925 6.9e-87 323.9 164 100.0
Thhalv10019802m.g Eutrema salsugineum HOM05D007903 ORTHO05D009925 2.0e-62 242.7 167 77.2
Sp5g23400 Schrenkiella parvula HOM05D007903 ORTHO05D009925 2.2e-61 239.2 163 79.1
BraA02t06557Z Brassica rapa HOM05D007903 ORTHO05D009925 1.1e-60 236.9 165 76.4
BcaB03g15412 Brassica carinata HOM05D007903 ORTHO05D009925 1.4e-58 229.9 163 72.4
BcaC08g45975 Brassica carinata HOM05D007903 ORTHO05D009925 1.5e-57 226.5 163 72.4
C06p37650 Brassica napus HOM05D007903 ORTHO05D009925 1.5e-57 226.5 163 72.4
BolC6t38868H Brassica oleracea HOM05D007903 ORTHO05D009925 1.5e-57 226.5 163 72.4
CARHR061060 Cardamine hirsuta HOM05D007903 ORTHO05D009925 2.7e-54 215.7 164 73.2
Carub.0002s1485 Capsella rubella HOM05D007903 ORTHO05D009925 7.7e-54 214.2 164 73.2
AL2G27200 Arabidopsis lyrata HOM05D007903 ORTHO05D009925 5.0e-53 211.5 164 72.6
AT1G68350 Arabidopsis thaliana HOM05D007903 ORTHO05D009925 9.5e-52 207.2 164 72.6
THA.LOC104821918 Tarenaya hassleriana HOM05D007903 ORTHO05D009925 5.6e-28 128.3 167 46.1
C06p38420 Brassica napus HOM05D000305 ORTHO05D000065 7.3e-20 101.3 78 74.4
BolC6t38941H Brassica oleracea HOM05D000305 ORTHO05D000065 7.3e-20 101.3 78 74.4
CiPaw.05G239700 Carya illinoinensis HOM05D007903 ORTHO05D009925 1.2e-19 100.5 165 38.8
CSS0015489 Camellia sinensis var. sinensis HOM05D007903 ORTHO05D009925 3.6e-19 99.0 164 42.7
Haze_00633 Corylus avellana HOM05D007903 ORTHO05D009925 3.6e-19 99.0 166 40.4
Hma1.2p1_1875F.1_g306260 Hydrangea macrophylla HOM05D007903 ORTHO05D009925 3.6e-19 99.0 172 38.4
Cfa015866 Carpinus fangiana HOM05D007903 ORTHO05D009925 6.2e-19 98.2 166 39.8
Potri.010G122600 Populus trichocarpa HOM05D007903 ORTHO05D009925 5.2e-18 95.1 166 41.0
Ciclev10017603m.g Citrus clementina HOM05D007903 ORTHO05D009925 9.9e-17 90.9 176 39.2
QL01p040711 Quercus lobata HOM05D007903 ORTHO05D009925 1.3e-16 90.5 142 43.7
DCAR_030171 Daucus carota HOM05D007903 ORTHO05D009925 3.8e-16 89.0 166 36.7
MD13G1039400 Malus domestica HOM05D007903 ORTHO05D009925 8.4e-16 87.8 169 37.9
MD16G1040300 Malus domestica HOM05D007903 ORTHO05D009925 2.4e-15 86.3 170 38.8
Potri.008G122700 Populus trichocarpa HOM05D007903 ORTHO05D009925 2.4e-15 86.3 166 36.7
A02p14900 Brassica napus HOM05D007903 ORTHO05D009925 3.2e-15 85.9 53 81.1
Sabra10G0092700 Salix brachista HOM05D007903 ORTHO05D009925 3.2e-15 85.9 167 39.5
Hma1.2p1_2787F.1_g328510 Hydrangea macrophylla HOM05D007903 ORTHO05D009925 4.2e-15 85.5 148 37.2
TAR374G1449 Trochodendron aralioides HOM05D007903 ORTHO05D009925 2.7e-14 82.8 165 35.8
CANSAT01G0431 Cannabis sativa HOM05D007903 ORTHO05D009925 7.8e-14 81.3 176 35.2
PGSC0003DMG400006002 Solanum tuberosum HOM05D007903 ORTHO05D009925 2.3e-13 79.7 176 34.1
Thecc.02G225400 Theobroma cacao HOM05D007903 ORTHO05D009925 3.0e-13 79.3 172 37.8
Cpa.g.sc65.47 Carica papaya HOM05D007903 ORTHO05D009925 1.1e-12 77.4 164 37.8
Prupe.1G313800 Prunus persica HOM05D007903 ORTHO05D009925 1.1e-12 77.4 174 37.9
CAN.G25.18 Capsicum annuum HOM05D007903 ORTHO05D009925 1.5e-12 77.0 172 34.3
Oeu057730.1 Olea europaea HOM05D007903 ORTHO05D009925 1.5e-12 77.0 156 40.4
Gohir.D09G043400 Gossypium hirsutum HOM05D007903 ORTHO05D009925 1.9e-12 76.6 142 37.3
Gorai.006G050300 Gossypium raimondii HOM05D007903 ORTHO05D009925 1.9e-12 76.6 142 37.3
Manes.14G104700 Manihot esculenta HOM05D007903 ORTHO05D009925 4.3e-12 75.5 164 37.8
PGR119G1971 Punica granatum HOM05D007903 ORTHO05D009925 4.3e-12 75.5 166 37.3
Gohir.A09G042700 Gossypium hirsutum HOM05D007903 ORTHO05D009925 7.3e-12 74.7 177 37.3
Aqoxy3G00252 Aquilegia oxysepala HOM05D007903 ORTHO05D009925 1.2e-11 73.9 172 37.8
Peaxi162Scf00564g00039 Petunia axillaris HOM05D007903 ORTHO05D009925 1.2e-11 73.9 135 34.1
Sabra08G0093200 Salix brachista HOM05D007903 ORTHO05D009925 1.6e-11 73.6 153 35.9
Lalb_Chr06g0165971 Lupinus albus HOM05D007903 ORTHO05D009925 2.1e-11 73.2 168 34.5
FAN12G2568 Fragaria x ananassa HOM05D007903 ORTHO05D009925 2.8e-11 72.8 133 36.1
RcHm_v2.0_Chr4g0434841 Rosa chinensis HOM05D007903 ORTHO05D009925 3.6e-11 72.4 136 35.3
TWI31G0067 Tripterygium wilfordii HOM05D007903 ORTHO05D009925 6.2e-11 71.6 167 33.5
FAN17G2767 Fragaria x ananassa HOM05D007903 ORTHO05D009925 8.1e-11 71.2 130 35.4
Solyc04g007360.1 Solanum lycopersicum HOM05D007903 ORTHO05D009925 1.4e-10 70.5 171 31.0
CSS0009081 Camellia sinensis var. sinensis HOM05D007903 ORTHO05D009925 2.4e-10 69.7 159 34.6
Eucgr.G02306 Eucalyptus grandis HOM05D007903 ORTHO05D009925 9.0e-10 67.8 168 34.5
Duzib268G0450 Durio zibethinus HOM05D007903 ORTHO05D009925 2.0e-09 66.6 170 34.1
FAN07G0160 Fragaria x ananassa HOM05D007903 ORTHO05D009925 3.4e-09 65.9 126 36.5
FAN22G0942 Fragaria x ananassa HOM05D007903 ORTHO05D009925 3.4e-09 65.9 135 35.6
Sopen04g002420 Solanum pennellii HOM05D007903 ORTHO05D009925 4.4e-09 65.5 138 34.1
ClCG05G022570 Citrullus lanatus HOM05D007903 ORTHO05D009925 1.3e-08 63.9 143 37.8
FvH4_4g27040 Fragaria vesca HOM05D007903 ORTHO05D009925 1.7e-08 63.5 169 29.0
FAN12G1984 Fragaria x ananassa HOM05D007903 ORTHO05D009925 1.7e-08 63.5 169 29.0
Nn4g23903 Nelumbo nucifera HOM05D007903 ORTHO05D009925 1.7e-08 63.5 173 32.9
Lj5g0001705 Lotus japonicus HOM05D007903 ORTHO05D009925 6.4e-08 61.6 174 32.8
Sed0015064 Sechium edule HOM05D007903 ORTHO05D009925 8.4e-08 61.2 161 31.7
CsaV3_5G034450 Cucumis sativus L. HOM05D007903 ORTHO05D009925 1.4e-07 60.5 145 33.8
VMungo0720G0077 Vigna mungo HOM05D007903 ORTHO05D009925 4.2e-07 58.9 175 30.9
CSS0036148 Camellia sinensis var. sinensis HOM05D007903 ORTHO05D009925 9.3e-07 57.8 159 32.1
Sc04g0006190 Simmondsia chinensis HOM05D007903 ORTHO05D009925 1.6e-06 57.0 166 31.3


User provided reference genes

Program Settings